BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13810.1
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940846 jgi|Araly1|940846|scaffold_601390.1 1199 0.0
> Ahg940846 jgi|Araly1|940846|scaffold_601390.1
Length=854
Score = 1199 bits (649), Expect = 0.0
Identities = 792/859 (92%), Gaps = 17/859 (2%)
Strand=Plus/Plus
Query 317 TTCTTTGATCTAATTTCGATGGCGGGATTAGAGAAAAACGCTGATTTCTCAGGGAAGACG 376
||||||||||| ||||||||||||||||||| ||||| | | || ||| | | |
Sbjct 4 TTCTTTGATCTGGTTTCGATGGCGGGATTAGACAAAAA--C-G----CT--GGG-A-A-G 51
Query 377 ACGAAATCGGCTACAACGACGTCGTTCTTCAACAGGTCGCTTACAATTCACGGAAGAACA 436
|||||||||||||| ||| | ||||| |||||||||||||||||||||||||| ||||||
Sbjct 52 ACGAAATCGGCTACGACGTCTTCGTTTTTCAACAGGTCGCTTACAATTCACGGGAGAACA 111
Query 437 GTGGTGGATTCGGGCCCCAAATCCCACAATCTCAATCCTTCTCTCAATCGTACCACCTCC 496
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 GTGGTGGATTCGAGCCCCAAATCCCACAATCTCAATCCTTCTCTCAATCGTACCACCTCC 171
Query 497 ATTACCAAATTCTACACCCCCGTAGAATCGATGGGAACTTCTCTTAAAGGCAAAGTCAAA 556
||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 172 ATTACCAAATTCTACACCCCCGTGGAATCTATGGGAAGTTCTCTTAAAGGCAAAGTCAAA 231
Query 557 AACCTTTGTAGATTATTCGAGACTTCCAAACCCGTTAAACCTGCCTTAGCTGAGATTCCT 616
||||||||||||||||| |||| |||||||||||||||||| |||| ||||||||||||
Sbjct 232 AACCTTTGTAGATTATTTGAGAGTTCCAAACCCGTTAAACCAGCCTCCGCTGAGATTCCT 291
Query 617 CAGAAGCAGAAATCCGGTAAATCCCTTTTACCCGAATCGCGGATATCGCCTTTTT-CGAG 675
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 292 CAAAAGCAGAAATCCGGCAAATCTCTTTTACCCGAATCGCGGATATCGCCTTTTTTC-AG 350
Query 676 CTTAAACAACTCGGTCATCCGTCTTCCCGGGACAGAGGACAGGATTGTGGTGTATTTTAC 735
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CTTAAACAACTCGGTGATCCGTCTTCCCGGGACAGAGGACAGGATTGTGGTGTATTTTAC 410
Query 736 TAGCTTGAGAGGGATTAGACGGACGTATGAGGATTGCTATGCTGTCAGAATGATATTTAG 795
|||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct 411 TAGCTTGAGAGGGATTAGGCGGACATATGAGGATTGCTATGCTGTGAGAATGATTTTTAG 470
Query 796 AGGGTTTCGGGTTTGGATCGATGAGCGCGACGTCTCCATGGATATCGCTTATAGGAAAGA 855
|||||||||||||||||| |||||||| || |||||||||||||| ||||| ||||||||
Sbjct 471 AGGGTTTCGGGTTTGGATAGATGAGCGTGATGTCTCCATGGATATAGCTTACAGGAAAGA 530
Query 856 GTTGCAGATTGCAATGGGAGAGAAGTCTGTGTCTTTGCCTCAAGTTTTCATTATGGGCAA 915
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||
Sbjct 531 GTTGCAGATTGCAATGGGAGAGAAGAGTGTGTCTTTGCCTCAAGTTTTCATCATGGGAAA 590
Query 916 GTATGTTGGTGGTGCTGATGTGATCAAGAGTTTGTTTGAGATTGGTGAGCTTGCTAAGAT 975
||||| ||||||||||||||||||||||||||||| |||||||| ||||| || |||||
Sbjct 591 ATATGTGGGTGGTGCTGATGTGATCAAGAGTTTGTTCGAGATTGGCGAGCTCGCCAAGAT 650
Query 976 TCTTAAAGAGTTTCCAATGAGACAACCAGGGTTTGTTTGCCATTGCTGTGGGGACATTC- 1034
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 651 TCTTAAAGAGTTTCCGATGAGACAACCAGGGTTTGTTTGCCATTGCTGCGGGGACAT-CA 709
Query 1035 GATTTGTTCCGTGTTCCAATTGTAGTGGCAGCAAGAAACTGTTTGATGAGGATGAAGATA 1094
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 710 GATTCGTTCCGTGTTCCAATTGTAGTGGGAGCAAGAAACTGTTTGATGAGGATGAAGATA 769
Query 1095 GGGTCAAGAGATGTCCTGAATGCAATGAGAATGGATTGATACGTTGTCCTGATTGCTCTT 1154
|| ||||||||||||| || |||||||||||||||||||||||||||||| ||||||| |
Sbjct 770 GGCTCAAGAGATGTCCCGACTGCAATGAGAATGGATTGATACGTTGTCCTCATTGCTCAT 829
Query 1155 CTTGAGATATATCA-TCAA 1172
||||||| |||||| ||||
Sbjct 830 CTTGAGAGATATCAATCAA 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59382691955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5