BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13820.1
Length=2548
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488205 jgi|Araly1|488205|fgenesh2_kg.6__1339__AT5G13820.1 3363 0.0
> Ahg488205 jgi|Araly1|488205|fgenesh2_kg.6__1339__AT5G13820.1
Length=2437
Score = 3363 bits (1821), Expect = 0.0
Identities = 2276/2480 (92%), Gaps = 94/2480 (4%)
Strand=Plus/Plus
Query 44 tcttcttcGTTATTTCTATTCTAGAagagagagagagagaAAGACAAGGACGATCGTTAA 103
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 1 TCTTCTTCGTTATTTCTATTCTAG-A-AGAGAGAGAGAGAAAGACAAGGACGATCGCTAA 58
Query 104 ATC-TTTTTCTCTTAAATCTTAGAATTTCAAAGTCTCTGTAAtttttttCTCTTTTCATT 162
||| ||||||||| ||||||||||||||| |||||||||||| |||||| |
Sbjct 59 ATCTTTTTTCTCTAAAATCTTAGAATTTCCAAGTCTCTGTAA--------AGTTTTCA-T 109
Query 163 TGTATAGCACAATTGTTCTTAATCAGAGATTCGTGAGAGGTAAAGGTAGCGTAATTATTC 222
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 110 TGTATAGCACAATTGTTC-TAATCAGAGATTCGTGAGAGGTAAAGGTTGCGTAATTATTC 168
Query 223 AGTTTGCGTGATCTATA-AT--TTAACTGGCGCCAGATTGTGATCCAGGAATC---GTTG 276
||||||||||||||||| || ||||||||||| | |||||||||||||| || ||||
Sbjct 169 AGTTTGCGTGATCTATATATAATTAACTGGCGCGATATTGTGATCCAGGACTCGTTGTTG 228
Query 277 GCTTGTTAGGTTGTTGTTTTGTTATGCATAATTGAGAGATGGTGGTCAAAAGGAAGTTAA 336
||| ||| | || ||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 229 GCTAATTA-G--GTAGTTCTGTTATGCATAATTGAGAGATGGTGGTCAAAAGGAAGTT-A 284
Query 337 ATTGTGGTGGCTCTAATGGTTTTGATTTCCCCAATATTCCCAAGGCTCCTCGTTCAAGCA 396
| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 A--GTTGTGGCTCTAAAGGTTTTGATTTCCCCAATATTCCCAAGGCTCCTCGTTCAAGCA 342
Query 397 GGAGGAAGGTCTCAGGTAAGAGA--T-CTGATG---ATGAAAGTGAGATCTGTGCAATTG 450
|||||||||| |||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 343 GGAGGAAGGTGTCAGGTAAGAGAGCTGATGATGATTATGAAAGTGAGATCTGTGCAATTG 402
Query 451 ATTTGCTAGCTTCTCTTGCTGGAAAGTTGTTGGAAGAAAGTGAAAGTTCCTCAACGTCTA 510
||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 403 ATTTGCTTGCTTCTCTTGCTGGCAAGTTGCTGGAAGAAAGTGAAAGTTCCTCAACGTCTA 462
Query 511 CCTATGCATCTGAAGCTGATAATCTTGATCATTTGGGTGGACT-G---A--TTAAGCAAG 564
||||||||| ||||| ||||||||||||||||||||||||| | | | |||||||||
Sbjct 463 CCTATGCATTTGAAGGTGATAATCTTGATCATTTGGGTGGAGTGGTTAAGCTTAAGCAAG 522
Query 565 AACTTGAAGATGGCTATACTACTAAGCCTTGTAAATCCGAGTTTTTCGATCCAGGAAACC 624
|||||||||||||||||| || ||||||||| ||| |||||||||||| ||||||||
Sbjct 523 AACTTGAAGATGGCTATA--AC-AAGCCTTGTCTATCTAAGTTTTTCGATCAAGGAAACC 579
Query 625 CTGCTTCAAAGTCTACTAGTGAAAATACTAGCGTGACTTGTTTGCCATTTTCGTCTTTCG 684
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 580 CAGCTTCAAAGTCTACTAGTGAAAATACTAGTGTGACTTGTTTGCCATTTTCGTCTTTGG 639
Query 685 AAAATGATTGCATTTTGGAGCAAACACCGGTTTCTGATTGTAAGAGGGCATCTGGTTTGA 744
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 640 AAAATGATTGCATTTTGGAGCAAACACCGGTTTCTGATTGTAAGACGGCGTGTGGTTTGA 699
Query 745 AGTCCCTGGTAGGGAGCATCACTGAGGAGACATGTGTTGTTAATGAGGATGCCGGATCTG 804
||||||||||| || | |||||||||||||||||||||||||||||||| ||||
Sbjct 700 AGTCCCTGGTA-GG-G-------GAGGAGACATGTGTTGTTAATGAGGATGCCGGGTCTG 750
Query 805 AACAAGGTGCTAA--TACTTTCAG-CTTAAAGGATCCAAGTCAATTACATTCGCAGTCTC 861
||||||| | || || | | |||||||||||||||||||||||||| ||||||||
Sbjct 751 AACAAGGAG--AAGCAAC-TGGTGCCTTAAAGGATCCAAGTCAATTACATTTGCAGTCTC 807
Query 862 CAGAATCGGTCCTTCTGGATGGCGATGTGAAATTAG-CACCATGCACGGATCAAGTCCCT 920
|||||||||||| ||||||||| ||||| ||||| | ||||||||||||||||| |||||
Sbjct 808 CAGAATCGGTCCATCTGGATGGAGATGTAAAATT-GCCACCATGCACGGATCAACTCCCT 866
Query 921 AATGATTCTTTTAAAGGATATAGGAATCATTCTAAGTTAGTTTGCAGAGATGATGACGAA 980
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 867 AATGATTCTTTTGAAGGATATGGGAATCATTCTAAGTTAGTTTGCAGAGATGATGACGAA 926
Query 981 AACTATTGTAAGTATTATAAATTTAGTGACAAATGTAAGTCATATAGGCCTCTCTCCCGG 1040
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 927 AACTATTGTAAGTATTATAAATTTAGTGACAAATGTAAGTCATATAGGCCTCCCTTCCGG 986
Query 1041 GTTGGCAATAGAAGAATAATGCAGTC---G--G------T-------GAGAGCAATCTCC 1082
||| | |||||||||||||||||||| | | | |||| ||||||||
Sbjct 987 GTTAGAAATAGAAGAATAATGCAGTCAGTGAAGACAAAATACGGCGGGAGATCAATCTCC 1046
Query 1083 AAGTTGAAGTGTTTTGAAGACACTAGAACAGATGGTCGTTTGAAGGCTCTCTACCGCAAG 1142
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1047 AATTTGAAGTGTTTTGAAGACACTAGAACAGATGGTCGTTTGAAGGCTCTGTACCGCAAG 1106
Query 1143 AGAAAATTATGTTATGGTTACAACCCATGGAAGCGTGAGACCATTCATAGGAAGAGAAGA 1202
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1107 AGAAAATTATGTTATGGTTACAACCCATGGAAGCGTGAGACCGTTCATAAGAAGAGAAGA 1166
Query 1203 TTGTCTGACAAAGGTTTGGTCGTAAATTATGATGGTGGGCTCAGTAGTGAAAGTGTTTCC 1262
||||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1167 TTGTCTGCCAAAGGGTTGGTCGTTAATTATGATGGAGGGCTCAGTAGTGAAAGTGTTTCC 1226
Query 1263 AATTCACCTGAAAAGGGAGAATCAGAAAATGGTGATTTCTCTGCTGCAAAAATAGGTCTT 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 AATTCACCTGAAAAGGGAGAATCAGAAAATGGTGATTTCTCTGCTGCAAAAATAGGTCTT 1286
Query 1323 CTTTCGAAAGACTCCCGTGTAAAGTTCAGCATCAAGTCCCTTAGGATTCCGGAGCTTGTA 1382
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 CTTTCGAAGGACTCCCGTGTAAAGTTCAGCATCAAGTCCCTTAGGATTCCGGAGCTTGTT 1346
Query 1383 ATTGAAGTTCCAGAAACAGCAACAGTAGGCTTACTGAAGAGGACGGTGAAGGAGGCGGTT 1442
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 1347 GTTGAAGTTCCAGAAACAGCAACAGTAGGCTTATTGAAGAGGACAGTGAAGGAGGCTGTT 1406
Query 1443 ACTGCTTTACTCGGTGGTGGAATACGTATTGGGGTGTTAGTCCAAGGGAAAAAAGTTAGA 1502
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1407 ACTGCTTTACTCGGTGGTGGAATACGTATTGGGGTGTTAGTCCAAGGGAAGAAGGTTAGA 1466
Query 1503 GATGACAACAACACTCTATCACAGACTGGTCTTTCGTGTAGAGAAAATCTTGGCAACCTT 1562
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 GATGACAACAACACACTATCACAGACTGGTCTTTCGTGTAGAGAAAATCTTGGCAACCTT 1526
Query 1563 GGCTTCACCTTAGAGCCTGGTTTGGAAACACTGCCTGTACCTCTTTGTTCTGAAACTCCT 1622
|||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1527 GGCTTCACATTGGAGCCTGGTCTGGAAACACTGCCTGTACCTCTTTGTTCTGAAACTCCT 1586
Query 1623 GTCCTTTCTCTGCCAACTGACTCTACAAAGTTGTCAGAAAGGTCCGCAGCTTCTCCAGCG 1682
||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1587 GTCGTTTCTGTGCCAACTGATTCTACAAAGTTGTCAGAAAGGTCCGCAGCTTCTCCCTCG 1646
Query 1683 TTAGAGACTGGAATTCCTCTCCCTCCCCAAGATGAAGATTACTTGATTAATTTGGGAAAT 1742
||||| ||| |||||||| ||| || ||||||||||||| | |||||||||||||||||
Sbjct 1647 TTAGATACTAGAATTCCTATCCTTCTCCAAGATGAAGATCCCCTGATTAATTTGGGAAAT 1706
Query 1743 AGTGTGGAGAACAATGATGAATTAGTCCCACATCTGAGTGACATA-C--CAGCTGATGAA 1799
||||||||||||||| |||||||||||||||||| |||||||||| | |||||||||||
Sbjct 1707 AGTGTGGAGAACAATCATGAATTAGTCCCACATCCGAGTGACATATCAGCAGCTGATGAA 1766
Query 1800 CAACCTTCATCAGATTCAAGAGCGCTGGTTCCAGTTTTGGCCTTGGAATCCGACGCTCTT 1859
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1767 CAACCTTCATCAGATTCAAGAGCGCTGGTTCCAGTTTCGGCCTTGGAATCCGAGGCTCTT 1826
Query 1860 GCACTTGTTCCAGTTAACGAGAAACCTAAGCGTACAGAGCTTTCACAACGCAGAACCAGG 1919
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1827 GCACTTGTTCCAGTTAACGAGAAACCTAAGCGTACAGAGCTTTCACAGCGCAGAACCAGG 1886
Query 1920 AGACCATTCTCTGTTACAGAGGTAGAAGCTCTAGTAAGCGCAGTTGAAGAAGTTGGGACT 1979
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1887 AGACCATTCTCTGTTACAGAGGTAGAAGCTCTAGTACGAGCAGTTGAAGAAGTTGGGACT 1946
Query 1980 GGAAGATGGCGTGATGTGAAGTTGCGTTCTTTTGAGAATGCAAGTCATCGAACCTATGTG 2039
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1947 GGAAGATGGCGTGATGTGAAGTTGCGTTCTTTTGAAAATGCAAGTCATCGAACCTATGTG 2006
Query 2040 GACTTGAAGGACAAATGGAAAACGTTGGTTCACACAGCAAGTATATCACCACAGCAACGA 2099
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2007 GACTTGAAGGACAAATGGAAAACGCTGGTTCACACAGCAAGTATATCACCACAGCAACGA 2066
Query 2100 AGAGGAGAACCAGTGCCTCAAGAACTGCTAGACAGAGTCTTAGGAGCACATAGGTACTGG 2159
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 2067 AGAGGAGAACCAGTGCCTCAAGATCTGCTAGACAGAGTCTTAGGAGCACATAGGTTTTGG 2126
Query 2160 ACACAGCACCAAATGAAACAGAACGGGAAACATCAGGTGGCTACAA---CAA---TGGTG 2213
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 2127 TCACAGCACCAAATGAAACAGAACGGGAAACATCAGGTGGCTACAAGTACAACAATGGTG 2186
Query 2214 GTTGAAGCAGGTTCGTCCATGTAAAGAAGGAGAATGGTAATAACAATAACTTTCACTTGA 2273
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 2187 GTTGAATCAGGTTCGTCCGTGTAAAGAAGGAGAATGTTAATAACAATAACTTTCACTTGA 2246
Query 2274 CGACTAAGGAACCAAAGTGGGCAACTGTACAAAGGGAAACAACAAAA-TACAGAAACATA 2332
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct 2247 CGACTAAGGAACCAAAGTGGGCAACTGTACAAAGGCAAACAACAAAAGTACAGAACCATA 2306
Query 2333 CTTAATTTCTGAAAAGAAGAGTCTATAtttttattttttttAAATCATAGCTGGTAGAAA 2392
||||||||||| |||||||| | || ||||| ||| | || ||||||||||||||||
Sbjct 2307 CTTAATTTCTGGAAAGAAGA--C-AT-TTTTT-TTTGT---AA-TCATAGCTGGTAGAAA 2357
Query 2393 CAAGACGTTCCTTGACACTTTTGGTTACTTTTATGGTAAGTCTGTTCATTCCAAATTTCT 2452
| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2358 CTTGACGTTCCTTGGCACTTTTGGTTACTTTTATGGTACGTCTGTTCATTCCAAATTTCT 2417
Query 2453 AATTGATTTGATTATGTAAT 2472
| ||||||||||||||||||
Sbjct 2418 AGTTGATTTGATTATGTAAT 2437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96063597890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5