BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G13825.1 Length=590 Score E Sequences producing significant alignments: (Bits) Value Ahg893283 jgi|Araly1|893283|Al_scaffold_0006_1279 560 4e-159 > Ahg893283 jgi|Araly1|893283|Al_scaffold_0006_1279 Length=375 Score = 560 bits (303), Expect = 4e-159 Identities = 353/377 (94%), Gaps = 4/377 (1%) Strand=Plus/Plus Query 84 ATGGAGGCTGAATCTAGTAGTTCTGGACATCGACGACAGAAACGTCCACGACAAAAGAGA 143 |||||||||||||||| ||||||||||||||||||||||||||||||||| || | | || Sbjct 1 ATGGAGGCTGAATCTACTAGTTCTGGACATCGACGACAGAAACGTCCACGGCAGAGGCGA 60 Query 144 TCATCGGATGTGATCAGTTATGAGAGCAGCGTTGCAAATCTGTC-AAGAGAAGGGAAAGA 202 || ||||| |||||||||||||||| |||||||||||||||||| ||| ||||| ||||| Sbjct 61 TCGTCGGAGGTGATCAGTTATGAGAACAGCGTTGCAAATCTGTCAAAG-GAAGGTAAAGA 119 Query 203 GACGTTGATGATTGTGAGTCGCAGAAGACAATTGAATAAAATCCCCAATACGTCTTCTAC 262 ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| Sbjct 120 GACGTTGATGATTGTGAGTCGCAGAAGGCAACTGAATAAAATCCCCAATACGTCTTGTAC 179 Query 263 TGTGTTTGATAATACATGTCCTCGTTACAACTGGCTTCGTTCTGGTTGGATCGCTGAGGA 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TGTGTTTGATAATACATGTCCTCGTTACAACTGGCTTCGTTCTGGTTGGATCGCTGAGGA 239 Query 323 GCGTCTTAAGGTCTATGACCGACTCTACCGGTATTTTTATGATCCATTAGGGCAAATGTA 382 |||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 240 GCGTCTTAAGCCCCATGACCGACTCTACCGGTATTTTTACGATCCATTAGGGCAAATGTA 299 Query 383 TCATACTCGTGGAGAAGTGGATCAAATCTATGCAGATATTGAAAAATCGCGCGCAATAGT 442 | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TGGTACTCGGGGAGAAGTGGATCAAATCTATGCAGATATTGAAAAATCGCGCGCAATAGT 359 Query 443 CGTCTTCCGA-AAGTAA 458 ||| ||| || |||||| Sbjct 360 CGTTTTC-GACAAGTAA 375 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21596063374 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5