BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G13825.1

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg893283 jgi|Araly1|893283|Al_scaffold_0006_1279                    560    4e-159


> Ahg893283 jgi|Araly1|893283|Al_scaffold_0006_1279
Length=375

 Score =  560 bits (303),  Expect = 4e-159
 Identities = 353/377 (94%), Gaps = 4/377 (1%)
 Strand=Plus/Plus

Query  84   ATGGAGGCTGAATCTAGTAGTTCTGGACATCGACGACAGAAACGTCCACGACAAAAGAGA  143
            |||||||||||||||| ||||||||||||||||||||||||||||||||| || | | ||
Sbjct  1    ATGGAGGCTGAATCTACTAGTTCTGGACATCGACGACAGAAACGTCCACGGCAGAGGCGA  60

Query  144  TCATCGGATGTGATCAGTTATGAGAGCAGCGTTGCAAATCTGTC-AAGAGAAGGGAAAGA  202
            || ||||| |||||||||||||||| |||||||||||||||||| ||| ||||| |||||
Sbjct  61   TCGTCGGAGGTGATCAGTTATGAGAACAGCGTTGCAAATCTGTCAAAG-GAAGGTAAAGA  119

Query  203  GACGTTGATGATTGTGAGTCGCAGAAGACAATTGAATAAAATCCCCAATACGTCTTCTAC  262
            ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||
Sbjct  120  GACGTTGATGATTGTGAGTCGCAGAAGGCAACTGAATAAAATCCCCAATACGTCTTGTAC  179

Query  263  TGTGTTTGATAATACATGTCCTCGTTACAACTGGCTTCGTTCTGGTTGGATCGCTGAGGA  322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  TGTGTTTGATAATACATGTCCTCGTTACAACTGGCTTCGTTCTGGTTGGATCGCTGAGGA  239

Query  323  GCGTCTTAAGGTCTATGACCGACTCTACCGGTATTTTTATGATCCATTAGGGCAAATGTA  382
            ||||||||||  | ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  240  GCGTCTTAAGCCCCATGACCGACTCTACCGGTATTTTTACGATCCATTAGGGCAAATGTA  299

Query  383  TCATACTCGTGGAGAAGTGGATCAAATCTATGCAGATATTGAAAAATCGCGCGCAATAGT  442
            |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  TGGTACTCGGGGAGAAGTGGATCAAATCTATGCAGATATTGAAAAATCGCGCGCAATAGT  359

Query  443  CGTCTTCCGA-AAGTAA  458
            ||| ||| || ||||||
Sbjct  360  CGTTTTC-GACAAGTAA  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21596063374


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5