BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13830.1
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325857 jgi|Araly1|325857|fgenesh1_pm.C_scaffold_6001077 1053 0.0
> Ahg325857 jgi|Araly1|325857|fgenesh1_pm.C_scaffold_6001077
Length=690
Score = 1053 bits (570), Expect = 0.0
Identities = 652/689 (95%), Gaps = 15/689 (2%)
Strand=Plus/Plus
Query 1 ATGAGTGGGGCAGGTGTACCGGACTTTTTCTACAGAGAAGCTCAACGTCTTGGCTATGTT 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTGGGGCAGGTGTGCCGGACTTTTTCTACAGAGAAGCTCAACGTCTTGGCTATGTT 60
Query 61 GCTCGCTCAGCTTTCAAGCTTCTACAGATTCAAAAACAGTACAAGCTCATCAAACCAGGC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTCGCTCTGCTTTCAAGCTTCTACAGATTCAAAAACAGTACAAGCTCATCAAACCAGGC 120
Query 121 TCCTCTGTTCTTGACCTAGGTTGCGCGCCTGGTGCTTGGCTTCAGGTTGCTTGCCAAAGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCTCTGTTCTTGACCTAGGTTGCGCGCCTGGTGCTTGGCTTCAGGTTGCTTGCCAAAGC 180
Query 181 TTAGGCCCACTTAGAAGTGGTGGAATTGTCGTTGGTATGGATATAAAGAAGGTGAAGGTT 240
||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TTAGGTCCACTTAAAAGTGGTGGAATTGTCGTCGGTATGGATATAAAGAAGGTGAAGGTT 240
Query 241 CCTCCACAGTGTGATTCTCGAGTGCAAACCATTGCTGCTGATGTTTTAAACTTTCCCAGA 300
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 241 CCTCCACAGTGTGATTCTCGAGTGCAAACCATTGCCGCCGATGTTTTAAACTTTCCCAGA 300
Query 301 CAAAAGATTCGGGAGTTATCACCTCAGCAATTGGGATTTTCAGTCATTCTTTCAGATATG 360
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAAACGATTCGGGAGTTATCGCCTCAGCAATTGGGATTTTCAGTCATTCTTTCAGATATG 360
Query 361 TGTCACTCAGTATCTGGAATAACCACTAGAGATGCAGCTCTGTCTGCTGAATTGGGAATG 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGTCACTCAGTATCTGGAATTACCACTAGAGATGCAGCTCTGTCTGCTGAATTGGGAATG 420
Query 421 CGAGCACTTGATTTGGCTGTTGGTCAAGCTGCCATCTCTCAGTCACCTAATGATGAT--- 477
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 CGTGCACTTGATTTGGCTGTTGGTCAAGCTGCCATCTCTCAGTCACCTGGTGATGATAAT 480
Query 478 GATGGAGGC---------CCAA--A-CGAAAGTCGTCCTGGTGTACTTAGGCATGGTGGC 525
||||||||| |||| | ||||||||||| |||||||||||||||||| ||
Sbjct 481 GATGGAGGCGATGAGGTTCCAAGCAACGAAAGTCGTCGTGGTGTACTTAGGCATGGGGGT 540
Query 526 CATCTTGTGATCAAGCTTCTAGAAAGCGAGGATGCTCAAGATTTTGCTCGAATTTGCAAG 585
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 CATCTTGTGATCAAGCTTTTAGAGAGCGAGGATGCTCAAGATTTTGCTCGAATTTGCAAG 600
Query 586 CCTATCTTCAACAAGGCATCTTGGTTGAGGCCAAAAGCTACAAGACCATCATCTCGAGAA 645
|| ||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 CCCATCTTTAGCAAGGCATCTTGGTTGAGGCCAAAAGCTACAAGATCATCATCTCGAGAA 660
Query 646 ATTTACTTGATTTGCCAGGGATTTCGATA 674
|||||||||||||||||||||||||||||
Sbjct 661 ATTTACTTGATTTGCCAGGGATTTCGATA 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24779896050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5