BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13850.1
Length=878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940852 jgi|Araly1|940852|scaffold_601396.1 1024 0.0
Ahg904129 jgi|Araly1|904129|Al_scaffold_0003_1257 459 2e-128
> Ahg940852 jgi|Araly1|940852|scaffold_601396.1
Length=656
Score = 1024 bits (554), Expect = 0.0
Identities = 625/658 (95%), Gaps = 10/658 (2%)
Strand=Plus/Plus
Query 68 CTCTCTCTCTAGAAAACATGACTGCCGAACAGAAAGTGGAGCTCGCCGCCAAATTGGAAG 127
|||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 4 CTCTCTCTCTCTCAAATATGACTGCCGAACAGAAAGAGGAGCTCGCCGCCAAATTGGAAG 63
Query 128 AGCAGAAGATCGATCTTGATAAACCTGAGGTTGAAgatgatgatgacaatgatgaggatg 187
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 64 AACAGAAGATCGATCTTGATAAGCCTGAGGTTGAAGACGATGATGACAATGATGAGGATG 123
Query 188 attccgaggacgatgacgaggc---ggagggacatgatgGGGAGGCCGGTGGCCGGTCAA 244
|||| || |||||||||||||| ||||||||||||||| |||||||| ||||||||||
Sbjct 124 ATTCGGACGACGATGACGAGGCGGAGGAGGGACATGATGGAGAGGCCGGCGGCCGGTCAA 183
Query 245 AGCAAAGCAGAAGTGAGAAAAAGAGTCGTAAAGCTATGTTGAAGCTTGGGATGAAACCAA 304
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 184 AGCAAAGCAGAAGTGAGAAAAAGAGTCGTAAAGCAATGTTGAAGCTTGGGATGAAACCCA 243
Query 305 TCACTGGTGTTAGCCGTGTCACCGTCAAAAAGAGCAAGAATATCTTGTTTGTGATATCAA 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TCACTGGTGTTAGCCGTGTCACCGTCAAAAAGAGCAAGAATATCTTGTTTGTGATATCAA 303
Query 365 AACCTGATGTGTTCAAGAGTCCAGCTTCAGATACATATGTGATCTTTGGTGAGGCCAAGA 424
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 304 AACCTGATGTGTTCAAGAGTCCAGCATCAGATACATATGTGATCTTTGGTGAGGCCAAGA 363
Query 425 TAGAGGATTTGAGCTCGCAGCTGCAGAGTCAAGCCGCAGAGCAGTTCAAGGCTCCCAACC 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TAGAGGATTTGAGCTCGCAGCTGCAGAGTCAAGCCGCAGAGCAGTTCAAGGCTCCCAACC 423
Query 485 TCAGCAACGTGATTTCACAGGGAGAAACATCGAGTGCTGCAACTGCAGCTGCTGTTCAAG 544
||||||| ||||| |||||||||||||||||||||| |||| |||||||||||||||| |
Sbjct 424 TCAGCAATGTGATATCACAGGGAGAAACATCGAGTGGTGCAGCTGCAGCTGCTGTTCA-G 482
Query 545 ATGATGATGATGAAGAGGTAGACGAGGAGGGAGTAGAGCCAAAGGACATCGAGCTTGTGA 604
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 483 --GATGATGATGAAGAGGTGGACGAGGAGGGAGTAGAGCCAAAGGACATCGAGCTGGTGA 540
Query 605 TGACCCAAGCAGGAGTGTCTAAGCCAAGGGCAGTTAAGGCGCTCAAG-CTCGCTAATGGA 663
|||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 541 TGACCCAAGCAGGAGTGTCTAAGCCAAGGGCAGTTAAGGCCCTCAAGGC-CGCTAATGGA 599
Query 664 GATATAGTCTCTGCCATCATGGAGCTTACCACCTAAATCCGAAAc-ttttcctacttt 720
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 600 GATATAGTCTCTGCCATCATGGAGCTTACCACCTAAATCTGAAACGTTTTC-TACTTT 656
> Ahg904129 jgi|Araly1|904129|Al_scaffold_0003_1257
Length=528
Score = 459 bits (248), Expect = 2e-128
Identities = 398/466 (85%), Gaps = 27/466 (6%)
Strand=Plus/Plus
Query 240 GTCAAAGCAAAGCAGAAGTGAGAAAAAGAGTCGTAAAGCTATGTTGAAGCTTGGGATGAA 299
|||||| ||||||||||||||||| |||||||| ||||| ||| | ||||| ||||||||
Sbjct 84 GTCAAAACAAAGCAGAAGTGAGAAGAAGAGTCGCAAAGCCATGCTCAAGCTCGGGATGAA 143
Query 300 ACCAATCACTGGTGTTAGCCGTGTCACCGTCAAAAAGAGCAAGAATATCTTGTTTGTGAT 359
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 144 ACCCATCACTGGTGTTAGCCGAGTCACCGTCAAAAAGAGCAAGAATATCTTGTTTGTCAT 203
Query 360 ATCAAAACCTGATGTGTTCAAGAGTCCAGCTTCAGATACATATGTGATCTTTGGTGAGGC 419
|||||||||||||||||||||||| || || ||||| ||||||||||||||||| |||||
Sbjct 204 ATCAAAACCTGATGTGTTCAAGAGCCCGGCATCAGACACATATGTGATCTTTGGAGAGGC 263
Query 420 CAAGATAGAGGATTTGAGCTCGCAGCTGCAGAGTCA-AGCC-GCAGAGCAGTTCAAGGCT 477
|||||| |||||||||||||| ||| | ||| ||| || | |||||||| |||||||||
Sbjct 264 CAAGATCGAGGATTTGAGCTCTCAGATCCAG--TCACAGGCAGCAGAGCAATTCAAGGCT 321
Query 478 CCCA-ACCTCAGCAACGTGATTTCACAGGGAGAAACATCGAGTGCTGCAACTGCAGCTGC 536
|| | | |||||||| ||||| ||| |||| || | ||||| | | |||||| |
Sbjct 322 CC-AGATCTCAGCAATGTGATCTCAAAGGGTGAGTCCTCGAG--C---A-CTGCAG-T-- 371
Query 537 TGTTCAAGATGATGATGATGAAGAGGTAGACGAGGAGGGAGTAGAGCCAAAGGACATCGA 596
|||||| | |||||||| | ||||| |||||||| || || |||||||||||||| ||
Sbjct 372 TGTTCA-G--GATGATGA-G--GAGGTTGACGAGGAAGGTGTTGAGCCAAAGGACATTGA 425
Query 597 GCTTG-TGATGACCCAAGCAGGAGTGTCTAAGCCAAGGGCAGTTAAGGCGCTCAAG-CTC 654
| ||| ||||||| |||||||||||||| | ||| |||||||| ||||| |||||| ||
Sbjct 426 G-TTGGTGATGACTCAAGCAGGAGTGTCGAGGCCTAGGGCAGTGAAGGCTCTCAAGGCT- 483
Query 655 GCTA-ATGGAGATATAGTCTCTGCCATCATGGAGCTTACCACCTAA 699
|| | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 484 GC-AGATGGAGATATTGTCTCTGCCATCATGGAGCTTACCACCTAA 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32518848201
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5