BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13870.1
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488211 jgi|Araly1|488211|fgenesh2_kg.6__1345__AT5G13870.1 1977 0.0
> Ahg488211 jgi|Araly1|488211|fgenesh2_kg.6__1345__AT5G13870.1
Length=1326
Score = 1977 bits (1070), Expect = 0.0
Identities = 1211/1279 (95%), Gaps = 9/1279 (1%)
Strand=Plus/Plus
Query 16 TTCTCCGGTCCTCATGCCTGCCGGAATCAGCTGGTCGGTTTGGACTCTCA-ATGGAGAGT 74
||||||||||||||||||||| |||||||||||||||||||||| ||| | | ||| | |
Sbjct 1 TTCTCCGGTCCTCATGCCTGCTGGAATCAGCTGGTCGGTTTGGATTCT-ACAGGGACACT 59
Query 75 GTGGAAGCTTCCAAGCAAATATGGTGGTATCTGGTGTCAAATAGTGTTTCTTTATTATCT 134
||| ||||||||||||| ||||| || ||| | | |||||||||| ||||||||||||||
Sbjct 60 GTGAAAGCTTCCAAGCAGATATGATGCTATTTTGAGTCAAATAGTATTTCTTTATTATCT 119
Query 135 TCTGCCCATAGATCTTAAACGTAAAAGCATCCAAAGATGCATTAATTAACGATAACATGG 194
|||||||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 120 TCTGCCCACAGATCTTAAACGTAAAAGCATCCAAAGATGCATTAA-T-----TAACATGG 173
Query 195 GGATGAGGTCCATGTGCCTCTGCAACACCTCTTATGCAATCACATTCTCTTGCTTCCCTA 254
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 174 GGATGAGGTCCATGTGCCTCTGCAACACCTCTTCTGCAATCACATTCTGTTGCTTCCCTA 233
Query 255 AGTTACTGCTGCCAACATTGAAAGAAA-CACAAAGTGCAGTGATTTTAATAATCAAATAT 313
||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 234 AGTTACTGCTGCCAACATTGAAAGAAACCCCAAAGTGCAGTGATTTTAATAATCAGATAT 293
Query 314 TATGTTAAGACGTAAGAGCAAGCTGATTGATGGCTATAAATAGAAATGTCCGCATAGTGT 373
||| ||||||| |||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 294 TATTTTAAGACTTAAGAGCAAGCTGATTAATGGCTATATATAGAAATGTCCGTGCAGTGT 353
Query 374 TTGTTTGGTGTGATCAGAGTGAGAATGGGTCGTCTTTCATCAACTCTCTGCCTCACGTTT 433
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 354 TTGTTTGGTGTGATGAGAGTGAGAATGGGTCGTCTTTCATCAACTCTCTGCCTCACCTTT 413
Query 434 CTGATTTTGGCCACAGTTGCATTTGGTGTACCTCCTAAAAAGTCCATTAATGTTCCATTT 493
||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CTGGTTATGGCCAAAGTTGCATTTGGTGTACCTCCTAAAAAGTCCATTAATGTTCCATTT 473
Query 494 GGGAGGAACTACTTCCCCACTTGGGCTTTTGATCACATTAAGTATCTCAATGGTGGTTCT 553
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 474 GGAAGGAACTACTTCCCCACTTGGGCTTTTGATCACATTAAGTATCTCAACGGTGGTTCT 533
Query 554 GAAGTGCATCTTGTCCTCGACAAGTACACTGGCACTGGCTTTCAGTCCAAAGGTTCCTAC 613
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GAAGTGCATCTCGTCCTCGACAAGTACACTGGCACTGGCTTTCAGTCCAAAGGTTCCTAC 593
Query 614 TTGTTTGGCCACTTCAGTATGCACATAAAGATGGTTGCTGGTGACTCTGCTGGAACTGTG 673
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 594 TTGTTTGGCCACTTCAGTATGCACATAAAGATGGTTGCTGGTGACTCTGCCGGAACTGTG 653
Query 674 ACCGCCTTCTATTTGTCGTCCCAGAACTCAGAACATGATGAGATAGACTTTGAGTTTCTA 733
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 654 ACCGCCTTCTATTTGTCATCGCAGAACTCAGAACATGATGAGATAGACTTTGAATTTCTA 713
Query 734 GGGAACAGAACTGGCCAGCCTTACATTTTGCAGACTAACGTGTTTACAGGAGGCGCCGGA 793
||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 714 GGGAACAGAACTGGCCAGCCTTACATTTTGCAGACAAACGTGTTTACAGGAGGCACTGGA 773
Query 794 AACCGTGAGCAACGAATCAACCTCTGGTTTGATCCTTCCAAGGACTATCATTCCTATTCA 853
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 774 AACCGTGAGCAGCGGATCAACCTCTGGTTTGATCCTTCCAAGGACTACCATTCCTATTCA 833
Query 854 GTTCTCTGGAACATGTATCAGATTGTGTTCTTTGTGGATGATGTGCCGATACGAGTGTTC 913
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 834 GTTCTCTGGAACATGTATCAGATTGTGTTCTTTGTGGATGATGTGCCGATAAGAGTGTTC 893
Query 914 AAGAATAGCAAAGACGTTGGGGTGAAGTTTCCATTCAACCAACCAATGAAGATATATTCG 973
||||||||||||||| |||||||||||||||| |||||||| || |||||||||||||||
Sbjct 894 AAGAATAGCAAAGACATTGGGGTGAAGTTTCCGTTCAACCAGCCGATGAAGATATATTCG 953
Query 974 AGTCTGTGGAATGCAGACGACTGGGCCACAAGGGGAGGGTTGGAGAAGACCAACTGGGAA 1033
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 954 AGTCTGTGGAATGCAGACGACTGGGCCACAAGGGGAGGGTTAGAGAAGACCAACTGGGAA 1013
Query 1034 AAAGCTCCTTTTGTCGCGTCCTACAGAGGCTTCCACGTCGATGGATGTGAAGCTTCAGTA 1093
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1014 AAAGCTCCTTTCGTCGCGTCCTACAGAGGCTTCCACGTCGATGGATGTGAAGTTTCAGTG 1073
Query 1094 AATGCTAAGTTCTGCGAGACGCAGGGAAAACGTTGGTGGGATCAGAAAGAGTTCCAGGAC 1153
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1074 AATGCTAAGTTCTGCGAGACCCAGGGAAAACGTTGGTGGGATCAGAAAGAGTTCCAGGAC 1133
Query 1154 TTGGACGCTAACCAGTACAAGCGTCTCAAATGGGTTCGTAAGAGATACACCATCTACAAC 1213
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TTGGACGCTAACCAGTACAAGCGTCTCAAATGGGTTCGTAAGAGATACACCATCTACAAT 1193
Query 1214 TATTGCACTGACCGCGTCCGATTTCCCGTACCTCCTCCAGAGTGCCGCAGAGACCGCGAC 1273
|| || |||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1194 TACTGTACTGACCGCGTCCGATTTCCTGTGCCTCCTCCAGAGTGCCGCAGAGACCGCGAC 1253
Query 1274 ATATAGTGATTTTTCAGAT 1292
|||||||| ||||||||||
Sbjct 1254 ATATAGTGTTTTTTCAGAT 1272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52031274670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5