BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13880.1
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488212 jgi|Araly1|488212|fgenesh2_kg.6__1346__AT5G13880.1 898 0.0
> Ahg488212 jgi|Araly1|488212|fgenesh2_kg.6__1346__AT5G13880.1
Length=694
Score = 898 bits (486), Expect = 0.0
Identities = 635/703 (90%), Gaps = 26/703 (4%)
Strand=Plus/Plus
Query 67 ATGAAGAAGGCGTCAGATTTCGTGAAGCAGATAATAAACATGTTGACTTGTCTAGCAAAG 126
|||||||||||| |||| |||||||||||||||||||||||||||| | |||||||||||
Sbjct 1 ATGAAGAAGGCGGCAGAATTCGTGAAGCAGATAATAAACATGTTGAGTGGTCTAGCAAAG 60
Query 127 GACAAGACGAAGGAGCTTAAGAGGAAGACAAGAGCCTTCAAGACACGTCTCGTAATATTT 186
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACAAGACAAAGGAGCTTAAGAGGAAGACAAGAGCCTTCAAGACACGTCTCGTAATATTC 120
Query 187 TCGCTGCTCCACAACAGACACATGGTGGTGGGTTCTTTGTCTCACAAGCTCAAGAGCAAT 246
|||||||||||||||||||||||||||||| | ||| | |||||||||||||||| |||
Sbjct 121 TCGCTGCTCCACAACAGACACATGGTGGTGAGCTCTCTCTCTCACAAGCTCAAGACCAAC 180
Query 247 CAAACATCAAAAAAGATAGATCATGATAACAAGGATGTTCAAGATTATCATGATAAAAAC 306
| || |||||||||||||||||||||||||||||||| | ||||| |||||||| |||||
Sbjct 181 CCAATATCAAAAAAGATAGATCATGATAACAAGGATGATGAAGATCATCATGATCAAAAC 240
Query 307 ATGGTGGTTGTGTATAGCCAAAACGTTAACGCCATGTCTAGCACTCCTGTCTCTCCGCAT 366
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGGTGGTGGTGTATAGTCACAACGTTAACGCCATGTCTAGCACTCCTGTCTCTCCGCAT 300
Query 367 GTACAATATCAATATACAGAGGAGGAAGATGAT---GAAGAAG--G-GGAAGA--AG-AA 417
||||||||||||||||| ||||||||||| ||| ||||||| | |||||| || ||
Sbjct 301 GTACAATATCAATATACGGAGGAGGAAGAAGATAAAGAAGAAGAAGAGGAAGAGGAGGAA 360
Query 418 -AAG-----TATCCAGACTTGAGACACTCGTTGTTTGAGGCAGAAGGTTCGGTGATAGAG 471
||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 361 GAAGAAAAGTATCCAGACTTGAGACACTCGCTGTTTGAGGCAGAGGGTTCGGTGATAGAG 420
Query 472 ATGGTGAAGCACTCCAAGGAGGACAATGGAGAAGAGTTTCGGTTGGAAGACGAGATCGAC 531
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 ATGGTGAAGCACTCCAAGGAGGACAATGGAGAAGAGTTTCGGTTGGAAGACGAGATTGAC 480
Query 532 AAAGTGGCTGATCTTTTTATTACCCGCTTCCATAGACAGATGTGGTTACAGAAGCAACTG 591
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 481 AAAGTGGCTGATCTTTTTATTACCCGCTTCCACCGACAGATGTGGTTGCAGAAGCAACTG 540
Query 592 TC-TCTCGAGAGTCCAGATACACCCTCCCCAATTC-ATTCTTAATATACATGTATTTGAC 649
|| | ||||||||||||||||| |||||||| ||| |||||||| |||||| |||||||
Sbjct 541 TCGT-TCGAGAGTCCAGATACATCCTCCCCA-TTCCATTCTTAAGATACATATATTTGAT 598
Query 650 GCTCCTCCTTGTTTTTTGTTTCGGGGTGAAGGACTCAATGATCCATACAGATTTTTGTTT 709
| |||||||||||||| ||| | || |||||| |||||||||| || ||||||| ||||
Sbjct 599 AC-CCTCCTTGTTTTTT-TTT-GTGGCGAAGGATTCAATGATCCTTATAGATTTT-GTTT 654
Query 710 TACGTAGTGAAAAATATGAAAACAGGACATATTTATTAATTTC 752
||||||||||| ||||||||| |||||| |||| |||||||
Sbjct 655 -ACGTAGTGAAA--TATGAAAACGGGACATGTTTACTAATTTC 694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27867852327
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5