BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13890.1
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488214 jgi|Araly1|488214|fgenesh2_kg.6__1348__AT5G13890.1 1759 0.0
> Ahg488214 jgi|Araly1|488214|fgenesh2_kg.6__1348__AT5G13890.1
Length=1291
Score = 1759 bits (952), Expect = 0.0
Identities = 1084/1147 (95%), Gaps = 11/1147 (1%)
Strand=Plus/Plus
Query 4 CAAATCCCGACCAACAACAACAAAACCCTAAAATC-AAGCTTCGAAAATGGGAGAGATGA 62
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 2 CAAATCCCGACCAACAACAACAAAACCCCAAAATCTCCGCTTCGAAAATGGGAGAGATGA 61
Query 63 TGTACAAGCTCTTCGCTTCAGCGTCACTACTAACCCTAGGATTGTATCATCTCATCTGCA 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TGTACAAGCTCTTCGCTTCAGCGTCACTACTAACCCTAGGATTGTATCATCTCATCTGCA 121
Query 123 CTTTCTTCCATCTCCTTAAATCTCCCCAATCCTACGCCGCGAAACCCTTTTACCCTTTTC 182
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 122 CTTTCTTCCATCTCCTCAAATCTCCTCAATCCTACGCCGCGAAACCCTTTTACCCTTTCC 181
Query 183 CACGTCTCTCCTCCGTCACCGGAAACAACCACCACAATCACAACCGCCTCCAAAATCTAC 242
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 182 CTCGTCTCTCCTCCGTCACCGGAAACAACCACCACAATCATAACCGCCTCCAAAATCTAC 241
Query 243 CACTGTTCATCCTCATACTCTCTCTATTCGTCGCTTTCCTTCACGAAACCCTAATCTCCT 302
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 242 CACTGTTCATCCTCATACTCTCTCTTTTCGTCGCTTTCCTTCACGAAACCCTAATTTCCT 301
Query 303 TCTACTCCGATCCTCTCGTCAAAGGAAGTACTCCTGTTCACCGATTCTCATCTCTCAATT 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TCTACTCCGATCCTCTCGTCAAAGGAAGTACTCCTGTTCACCGATTCTCATCTCTCAATT 361
Query 363 CCGCCGCCGTGTTCTTCCTCTTCCTCATCATCGCCATTTACTATCTCCTCTCCGATTCAA 422
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 362 CCGCCGCCGTGTTCTTCCTCTTCCTCATCATCGCCGTTTACTACCTCCTCTCCGATTCAA 421
Query 423 CCTCGTTAATCCCTCTCCCTTCCGATCTCCTCTTCGCACTCGCCTCCGTTGGTTTCTTCC 482
|||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 422 CCTCCTTAATCCCTCTTCCTTCCGATCTCCTCTTCGCACTCGCTTCCGTTGGTTTCTTCC 481
Query 483 TCCATTACTCCGCCGCGTCTTCATCAGCTGCAATTCAAACATCTGATCTTCAAGCTCATT 542
|||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 482 TCCATTACTCAGCCGCATCTTCATCGGCTGCAATCCAAACATCGGATCTTCAAGCTCATT 541
Query 543 GTGATTCCCTCTCTGCTCGTATCTCCGCGTTATGCTCTCTCCTCTGTTTGCTTCTCGCTT 602
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 542 GTGATTCCCTCTCTGCTCGTATCTCCGCCTTATGCTCTCTCCTCTGCTTGCTTCTCGCTT 601
Query 603 GCCGTTCAAGACTCTTTATTGCTGACGCTGCTCTCGCTGCTGCCATTTGTCTTCAAGGTC 662
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GCCGTTCAAGACTCTTTATCGCTGACGCTGCTCTCGCTGCTGCCATTTGTCTTCAAGGTC 661
Query 663 TCTGGCAGCTTCAGACTGGACTCTCTCTCTACGTTGATGGGTTTATTCCTGAGGGATGTC 722
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 662 TCTGGCAGCTTCAGACTGGACTCTCTCTCTACGTTGATGGGTTTATTCCCGAGGGATGTC 721
Query 723 ATCGTCTTCTTGATGTTCAAAGCGGTGTTGAAGGATCAACCCAATGTGATATTCAGGACT 782
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 722 ATCGTCTTCTTGATGTTCAAAGCGGCGTTGAAGGATCAACAAAATGTGATATTCAGGACT 781
Query 783 CTAAGCTAAGAGCTGTTTCTATATTGGATCTAATGTTCACTGTACACGTCGTGCTTGTGG 842
|||||||||| ||||| || ||||||||||||||||||||||| ||||| || |||||||
Sbjct 782 CTAAGCTAAGGGCTGTCTCAATATTGGATCTAATGTTCACTGTGCACGTTGTCCTTGTGG 841
Query 843 TTATCCTCATCTTTGTGACTTACACGATGGTGGTGATGGCGGCCGGAGTGAGAAGAACTG 902
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TTATCCTCATCTTTGTGACCTACACGATGGTGGTGATGGCGGCCGGAGTGAGAAGAACTG 901
Query 903 GTTCTTATGAAGCTTTGCCGACTAACAATGCTGATTCTAATCACATTCAGATGAAGTCGT 962
|||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 902 GTTCTTATGAGGCTTTGCCCACCAATAATGCTGATTCTAATCACATTCAGATGAAGTCGT 961
Query 963 TGACAGGCACTCAGGCTTGAAACCTTATCAAATCCTATCGCTTTGCCtttttttGAGATT 1022
|||| |||||||||||||||||||||||||| |||| | ||||||||||||||| |||
Sbjct 962 TGACCGGCACTCAGGCTTGAAACCTTATCAA-TCCTCTTGCTTTGCCTTTTTTTTTGATG 1020
Query 1023 TGCATTTGGAAGCCTAACGACATGAAGCTGTCTTGAAGATTGGATCTTCTTATTATGGGC 1082
|||| ||||||||||||||||| ||||||||||||| |||||||||| |||||||||
Sbjct 1021 TGCAGTTGGAAGCCTAACGACAAAAAGCTGTCTTGAACATTGGATCTT---ATTATGGGC 1077
Query 1083 CCAAGCACT-GGCCCAGATATGTCTTGTACT--AT-TT-GTATGCTTTGATAGCTTGAAA 1137
||||||| | ||||||||| |||| ||||| || || |||||||||||||||||||||
Sbjct 1078 CCAAGCA-TAGGCCCAGATTTGTCAAGTACTGTATATTTGTATGCTTTGATAGCTTGAAA 1136
Query 1138 TTTGGAG 1144
| |||||
Sbjct 1137 TCTGGAG 1143
Score = 182 bits (98), Expect = 8e-45
Identities = 134/149 (90%), Gaps = 12/149 (8%)
Strand=Plus/Plus
Query 1197 AAAATGATAAAAGGATAAAACAATCAAATGCAGCTTGAAACGGCCATAACATAAAGTACC 1256
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1155 AAAATGATAAAAGGATAAAACAATCAAATGTAGCTTGAAACGGCCATAACATAAAGTACC 1214
Query 1257 TTATGGTGGTGCGAATATTTTTGTGTTTCTTTCACTCTTTTATTGCTGAAAGCTACGACA 1316
|||||||||||||||||||| ||||||| | | | | ||||||||||||||||
Sbjct 1215 TTATGGTGGTGCGAATATTTATGTGTTT-T---A-T-T------GCTGAAAGCTACGACA 1262
Query 1317 CTTGTCTTAATATATTGTTTCCGCAAGTC 1345
||||||||||||||||||||||| |||||
Sbjct 1263 CTTGTCTTAATATATTGTTTCCGTAAGTC 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50322250440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5