BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G13900.1

Length=583
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488216 jgi|Araly1|488216|fgenesh2_kg.6__1350__AT5G13900.1         538    2e-152


> Ahg488216 jgi|Araly1|488216|fgenesh2_kg.6__1350__AT5G13900.1
Length=534

 Score =  538 bits (291),  Expect = 2e-152
 Identities = 410/464 (88%), Gaps = 22/464 (5%)
 Strand=Plus/Plus

Query  46   CGTTGTACTTCTTCTAGTTGCAGCTAGCTCGGGGATGCGGATAAATGGGCAGAGCGTTTC  105
            ||||| |||||||||||||||||||| ||| |||||||  |||| |||||| ||||||||
Sbjct  39   CGTTGCACTTCTTCTAGTTGCAGCTAACTCAGGGATGCAAATAAGTGGGCAAAGCGTTTC  98

Query  106  GTGTCTAAACCAACTTGCTCCATGCCTAAATTACCTGAATGGGACCAAGGAAGTACCTCA  165
            ||| |||||||| ||||| |||||||||||||||||||| || ||||||||||| |||||
Sbjct  99   GTGCCTAAACCAGCTTGCCCCATGCCTAAATTACCTGAACGGTACCAAGGAAGTGCCTCA  158

Query  166  AGTTTGTTGTAATCCTCTCAAATCAGTGATAAGGAACAATCCAGAGTGCTTGTGCCGTAT  225
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  159  AGTTTGCTGTAATCCTCTCAAATCAGTGATAAGGAACAATCCAGAGTGCTTGTGCCGTAT  218

Query  226  GATTAGTAACCGTTGG-AGTTCTCAAGCCGAGCGAGCTGGCATCGATGTCAATGATGCTC  284
            ||||||||||||  || |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct  219  GATTAGTAACCG-AGGAAGTTCTCAGGCCGAACGAGCTGGCATCGATGTCAATGATGCTC  277

Query  285  AAATGTTGCCTGCTCGATGTGGAGAACATGTCAATCCCATTGCTTGCTTGACTCGTTCTA  344
            ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| 
Sbjct  278  AAATGTTGCCTGCTCGATGTGGAGAACATGTCAATCCAATTGCTTGCTTAACTCGATCTC  337

Query  345  GAGGAGGATCTACAAACTCAGACCGAAGTTCCTCCAT-TGGCAACACCTTTTCTCAGTCC  403
            |||||   |||||||||||| || ||||||||||| | ||||||| |||| ||||| |||
Sbjct  338  GAGGA---TCTACAAACTCAAACAGAAGTTCCTCC-TCTGGCAACTCCTTCTCTCAATCC  393

Query  404  TATTGGATGACAACATTAGCTATTGCAGC-CA-CTGTTTTGTCATATTGCCATCACATAA  461
            ||||||||||||||||||||| ||||| | || | |||||||||| ||   ||  | |  
Sbjct  394  TATTGGATGACAACATTAGCTTTTGCA-CTCATC-GTTTTGTCAT-TTAT-ATT-C-T--  445

Query  462  TT-AGCTGAATCTCTCATTGTCTATAGCAGCTTTGCTTTGCTTT  504
            || || | ||||||  ||||||||||||| || |||||||||||
Sbjct  446  TTCAG-T-AATCTC--ATTGTCTATAGCAACTCTGCTTTGCTTT  485


 Score = 84.2 bits (45),  Expect = 9e-16
 Identities = 54/58 (93%), Gaps = 1/58 (2%)
 Strand=Plus/Plus

Query  526  CTTTG-tttttttAATGCTCTATTAGTTAATTATGATTATTGGTCGTCACCAACACAT  582
            ||||| ||||||| ||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct  477  CTTTGCTTTTTTTGATGCTGTATGAGTTAATTATGATTATTGGTCGTCACCAACACAT  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21328974251


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5