BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G13900.1 Length=583 Score E Sequences producing significant alignments: (Bits) Value Ahg488216 jgi|Araly1|488216|fgenesh2_kg.6__1350__AT5G13900.1 538 2e-152 > Ahg488216 jgi|Araly1|488216|fgenesh2_kg.6__1350__AT5G13900.1 Length=534 Score = 538 bits (291), Expect = 2e-152 Identities = 410/464 (88%), Gaps = 22/464 (5%) Strand=Plus/Plus Query 46 CGTTGTACTTCTTCTAGTTGCAGCTAGCTCGGGGATGCGGATAAATGGGCAGAGCGTTTC 105 ||||| |||||||||||||||||||| ||| ||||||| |||| |||||| |||||||| Sbjct 39 CGTTGCACTTCTTCTAGTTGCAGCTAACTCAGGGATGCAAATAAGTGGGCAAAGCGTTTC 98 Query 106 GTGTCTAAACCAACTTGCTCCATGCCTAAATTACCTGAATGGGACCAAGGAAGTACCTCA 165 ||| |||||||| ||||| |||||||||||||||||||| || ||||||||||| ||||| Sbjct 99 GTGCCTAAACCAGCTTGCCCCATGCCTAAATTACCTGAACGGTACCAAGGAAGTGCCTCA 158 Query 166 AGTTTGTTGTAATCCTCTCAAATCAGTGATAAGGAACAATCCAGAGTGCTTGTGCCGTAT 225 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 159 AGTTTGCTGTAATCCTCTCAAATCAGTGATAAGGAACAATCCAGAGTGCTTGTGCCGTAT 218 Query 226 GATTAGTAACCGTTGG-AGTTCTCAAGCCGAGCGAGCTGGCATCGATGTCAATGATGCTC 284 |||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||| Sbjct 219 GATTAGTAACCG-AGGAAGTTCTCAGGCCGAACGAGCTGGCATCGATGTCAATGATGCTC 277 Query 285 AAATGTTGCCTGCTCGATGTGGAGAACATGTCAATCCCATTGCTTGCTTGACTCGTTCTA 344 ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 278 AAATGTTGCCTGCTCGATGTGGAGAACATGTCAATCCAATTGCTTGCTTAACTCGATCTC 337 Query 345 GAGGAGGATCTACAAACTCAGACCGAAGTTCCTCCAT-TGGCAACACCTTTTCTCAGTCC 403 ||||| |||||||||||| || ||||||||||| | ||||||| |||| ||||| ||| Sbjct 338 GAGGA---TCTACAAACTCAAACAGAAGTTCCTCC-TCTGGCAACTCCTTCTCTCAATCC 393 Query 404 TATTGGATGACAACATTAGCTATTGCAGC-CA-CTGTTTTGTCATATTGCCATCACATAA 461 ||||||||||||||||||||| ||||| | || | |||||||||| || || | | Sbjct 394 TATTGGATGACAACATTAGCTTTTGCA-CTCATC-GTTTTGTCAT-TTAT-ATT-C-T-- 445 Query 462 TT-AGCTGAATCTCTCATTGTCTATAGCAGCTTTGCTTTGCTTT 504 || || | |||||| ||||||||||||| || ||||||||||| Sbjct 446 TTCAG-T-AATCTC--ATTGTCTATAGCAACTCTGCTTTGCTTT 485 Score = 84.2 bits (45), Expect = 9e-16 Identities = 54/58 (93%), Gaps = 1/58 (2%) Strand=Plus/Plus Query 526 CTTTG-tttttttAATGCTCTATTAGTTAATTATGATTATTGGTCGTCACCAACACAT 582 ||||| ||||||| ||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 477 CTTTGCTTTTTTTGATGCTGTATGAGTTAATTATGATTATTGGTCGTCACCAACACAT 534 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21328974251 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5