BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G13910.1

Length=636
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940858 jgi|Araly1|940858|scaffold_601402.1                       1031    0.0  


> Ahg940858 jgi|Araly1|940858|scaffold_601402.1
Length=678

 Score = 1031 bits (558),  Expect = 0.0
 Identities = 610/636 (96%), Gaps = 0/636 (0%)
 Strand=Plus/Plus

Query  1    ATGAACACAACATCATCAAAGAGCAAGAAGAAGCAAGACGATCAGGTTGGTACAAGGTTT  60
            |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  23   ATGAACACAACATCGTCAAAGAGCAAGAAGAAGCAAGACGATCAAGTGGGTACAAGGTTT  82

Query  61   CTTGGGGTGAGAAGAAGGCCTTGGGGAAGATACGCAGCTGAGATTAGAGACCCAACTACG  120
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  83   CTTGGGGTGAGAAGAAGGCCTTGGGGAAGATACGCAGCTGAGATAAGAGACCCAACTACG  142

Query  121  AAGGAGCGTCACTGGCTTGGCACTTTCGATACGGCGGAAGAAGCTGCCTTGGCCTACGAT  180
            |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct  143  AAGGAGCGTCACTGGCTTGGCACTTTTGATACGGCCGAAGAAGCTGCCTTGGCCTACGAT  202

Query  181  AGAGCTGCTCGGTCCATGCGTGGCACACGTGCCAGAACCAACTTTGTTTACTCAGACATG  240
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  203  AGAGCCGCTCGGTCCATGCGTGGCACACGTGCCAGAACCAACTTTGTTTACTCAGACATG  262

Query  241  cctccttcctcatccgtcacctccattgtttctcctgacgatcctcctcctcctccacct  300
            ||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct  263  CCTCCTTCCTCCTCCGTCACTTCCATTGTTTCTCCTGATGATCCCCCTCCTCCTCCACCT  322

Query  301  cctcctgctcctcctAGCAATGATCCTGTCGATTACATGATGATGTTTAACCAATACTCA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  323  CCTCCTGCTCCTCCTAGCAATGATCCTGTCGATTACATGATGATGTTTAACCAATACTCA  382

Query  361  TCCACTGACTCGCCAATGCTTCAGCCTCATTGTGATCAAGTGGACAGTTACATGTTTGGT  420
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  383  TCCACTGACTCGCCAATGCTTCAGCCTCATTGTGATCAAGTGGATAGTTACATGTTTGGT  442

Query  421  GGCTCTCAATCTTCGAATTCTTATTGCTATTCTAATGACAGTAGTAATGAGCTGCCTCCT  480
            |||||||||||| | ||||||||||| ||||||||  |||||||||| ||||||||||||
Sbjct  443  GGCTCTCAATCTACTAATTCTTATTGTTATTCTAACAACAGTAGTAACGAGCTGCCTCCT  502

Query  481  CTCCCGAGCGACTTGTCGAATTCGTGTTATAGCCAACCACAGTGGACCTGGACCGGTGAC  540
            || |||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| 
Sbjct  503  CTGCCGAGCGACTTGTCCAATTCGTGTTATATCCAACCACAGTGGACCTGGAGCGGTGAT  562

Query  541  GACTACTCGTCTGAGTACGTACATAGTCCAATGTTCAGCAGAATGCCTCCGGTTTCTGAC  600
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  563  GACTACTCGGCTGAGTACGTACATAGTCCAATGTTCAGCAGAATGCCTCCGGTTTCTGAC  622

Query  601  TCTTTCCCTCAAGGTTTCAACTACTTTGGCTCCTAA  636
            ||||||||||||||||||||| |||| |||||||||
Sbjct  623  TCTTTCCCTCAAGGTTTCAACCACTTCGGCTCCTAA  658



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23293102287


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5