BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G13910.1 Length=636 Score E Sequences producing significant alignments: (Bits) Value Ahg940858 jgi|Araly1|940858|scaffold_601402.1 1031 0.0 > Ahg940858 jgi|Araly1|940858|scaffold_601402.1 Length=678 Score = 1031 bits (558), Expect = 0.0 Identities = 610/636 (96%), Gaps = 0/636 (0%) Strand=Plus/Plus Query 1 ATGAACACAACATCATCAAAGAGCAAGAAGAAGCAAGACGATCAGGTTGGTACAAGGTTT 60 |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| Sbjct 23 ATGAACACAACATCGTCAAAGAGCAAGAAGAAGCAAGACGATCAAGTGGGTACAAGGTTT 82 Query 61 CTTGGGGTGAGAAGAAGGCCTTGGGGAAGATACGCAGCTGAGATTAGAGACCCAACTACG 120 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 83 CTTGGGGTGAGAAGAAGGCCTTGGGGAAGATACGCAGCTGAGATAAGAGACCCAACTACG 142 Query 121 AAGGAGCGTCACTGGCTTGGCACTTTCGATACGGCGGAAGAAGCTGCCTTGGCCTACGAT 180 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 143 AAGGAGCGTCACTGGCTTGGCACTTTTGATACGGCCGAAGAAGCTGCCTTGGCCTACGAT 202 Query 181 AGAGCTGCTCGGTCCATGCGTGGCACACGTGCCAGAACCAACTTTGTTTACTCAGACATG 240 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 203 AGAGCCGCTCGGTCCATGCGTGGCACACGTGCCAGAACCAACTTTGTTTACTCAGACATG 262 Query 241 cctccttcctcatccgtcacctccattgtttctcctgacgatcctcctcctcctccacct 300 ||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||| Sbjct 263 CCTCCTTCCTCCTCCGTCACTTCCATTGTTTCTCCTGATGATCCCCCTCCTCCTCCACCT 322 Query 301 cctcctgctcctcctAGCAATGATCCTGTCGATTACATGATGATGTTTAACCAATACTCA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 323 CCTCCTGCTCCTCCTAGCAATGATCCTGTCGATTACATGATGATGTTTAACCAATACTCA 382 Query 361 TCCACTGACTCGCCAATGCTTCAGCCTCATTGTGATCAAGTGGACAGTTACATGTTTGGT 420 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 383 TCCACTGACTCGCCAATGCTTCAGCCTCATTGTGATCAAGTGGATAGTTACATGTTTGGT 442 Query 421 GGCTCTCAATCTTCGAATTCTTATTGCTATTCTAATGACAGTAGTAATGAGCTGCCTCCT 480 |||||||||||| | ||||||||||| |||||||| |||||||||| |||||||||||| Sbjct 443 GGCTCTCAATCTACTAATTCTTATTGTTATTCTAACAACAGTAGTAACGAGCTGCCTCCT 502 Query 481 CTCCCGAGCGACTTGTCGAATTCGTGTTATAGCCAACCACAGTGGACCTGGACCGGTGAC 540 || |||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| Sbjct 503 CTGCCGAGCGACTTGTCCAATTCGTGTTATATCCAACCACAGTGGACCTGGAGCGGTGAT 562 Query 541 GACTACTCGTCTGAGTACGTACATAGTCCAATGTTCAGCAGAATGCCTCCGGTTTCTGAC 600 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 563 GACTACTCGGCTGAGTACGTACATAGTCCAATGTTCAGCAGAATGCCTCCGGTTTCTGAC 622 Query 601 TCTTTCCCTCAAGGTTTCAACTACTTTGGCTCCTAA 636 ||||||||||||||||||||| |||| ||||||||| Sbjct 623 TCTTTCCCTCAAGGTTTCAACCACTTCGGCTCCTAA 658 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23293102287 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5