BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13920.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488218 jgi|Araly1|488218|fgenesh2_kg.6__1352__AT5G13920.1 952 0.0
> Ahg488218 jgi|Araly1|488218|fgenesh2_kg.6__1352__AT5G13920.1
Length=1194
Score = 952 bits (515), Expect = 0.0
Identities = 617/665 (93%), Gaps = 11/665 (2%)
Strand=Plus/Plus
Query 585 AGAATGTCAAGATTCTGTTA---GTGCAGAGGATGATTCTACATTAGAAAATTTGGATTC 641
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 528 AGAATGTCAAGCTTCTGTTAGTGGTGCAGAGGATGATTCTACATTAGAAAATTTGGATTC 587
Query 642 CATTTCAATGTCTGTTTCTGATGTACACTCTACTGCTCTGAACCAAGGTATCTCTCTGTT 701
|| | |||||||||||||||||||||| | || ||||||||||||||||||| |||||||
Sbjct 588 CACTGCAATGTCTGTTTCTGATGTACATTTTATTGCTCTGAACCAAGGTATCCCTCTGTT 647
Query 702 TGATCCGGTTACGAGCGAACCTGAAGAGCCATGGAAAAAGACT-CAGAATGGTGATCAGC 760
||| ||| || ||| ||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 648 TGAACCGTTTTCGATCGAACCTGAAGAGGCATGGAAAAAGACTCCA-CATGGTGATCAGC 706
Query 761 CAACAAATAGTGCTCTTTCTAAGTTGAGTGTGGATGAAGCGA-TGAGTGATTTGATCAGA 819
||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct 707 CAACAAATAGTGCTCTTTCTAAGTTGAGTCTGGATGAAGC-AGTGAGTGATTTGATCAGA 765
Query 820 GATACGGTCTCTAGTGGTTCTGTTGTGATACATGGAAGGACAAACCATGAGCAACCTGAA 879
||||| |||||||||||||||| |||||||||||||||||||| || ||||||||||| |
Sbjct 766 GATACTGTCTCTAGTGGTTCTGCTGTGATACATGGAAGGACAACCCGTGAGCAACCTGGA 825
Query 880 ATTGATGGAGCTGAGTGGTCATTCCCTTGCTTGCAGAACCTAATTGATCAGTACAACTCA 939
|||| || |||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 826 ATTGGTGAAGCTGAGTGGTCATTCCCTTACTTGCAGGACCTAATTGATCAGTACAACTCA 885
Query 940 GAGAAGCTTCAATTGGAGAGTATTTCAGGGAAACATGTACAAATGTTGAGTGAATTTATG 999
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 886 GAGAAGCTTCAATTGGAGAGTATTTCGGGGAAACATGTACAAGTGTTGAGTGAATTTATG 945
Query 1000 GCTTCGTACAGGCGACTAAGGTTACTTCATGAGAAAACTAGTCATCTCAGGAAAACTTTA 1059
|||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 946 TCTTCGTACAGGCGACTAAGGTTACTTCACGAGAAAACTTGTCACCTCAGGAAAACTTTA 1005
Query 1060 CTTGAAACAGAGAAGGAGATGGTTTGTTGTGAAG-CTGAGACATTAAAATTTGGAGCAAG 1118
|||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 1006 CTTGAAACAGAGAAGGAGATGGTTTGTTGTGA-GTCTGAGACATTAGAATTTGGAGCAAG 1064
Query 1119 TTGCAGGGAAGTGGCTGGAGAAATGGCTGAGTCTCAGAAGAGGATGCAGGAAACTGCAGA 1178
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1065 TTGTAGGGAAGTGGCTGGAGAAATGGCTGAGTCTCAGAAAAGGATGCAGGAGACTGCAGA 1124
Query 1179 TA-AACTAGGAAAAGAAGTAGAAGTGTTTAAGCAAAATGAGTTTGTTGGTCTAAAGAGAA 1237
| ||||||| ||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1125 -ACAACTAGGGAAAGAAGTAGAAGTGTTTAAGCAAAATGAGTTTGTTGCTCCGAAGAGAA 1183
Query 1238 GAAGA 1242
|||||
Sbjct 1184 GAAGA 1188
Score = 885 bits (479), Expect = 0.0
Identities = 537/565 (95%), Gaps = 3/565 (1%)
Strand=Plus/Plus
Query 16 ATGCAGACCGGAGATTGCTTCCGATGCCGTCAGGCTGGCCACTGGATCAACGATTGTCCT 75
|||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1 ATGCAGACCGGAAATTGCTTCCGATGCCGTCAGGCTGGTCACTGGATCAGCGATTGTCCT 60
Query 76 CTCAAATCCTACACC---GATGATCCTCCACCGGCGATCCAATGCCCATGCGGCGGAGGT 132
||||||||| | ||| ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct 61 CTCAAATCCAAAACCGATGATGATCCTCCACCGGCGATCCACTGCACTTGCGGTGGAGGT 120
Query 133 TTCTGTGAAATCAAGGTCGCGAATACTCGAGAAAATCCCGGAAGGAAGTTCTACAAGTGT 192
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 TTCTGCGAAATCAAGGTCGCGAATACTCGAGAAAATGCCGGAAGGAAGTTCTACAAGTGT 180
Query 193 CCAACGGCTCAGAATTGCTGTTTCTTCAAATGGTGTGACAAAGTAACCGACGAAGATATC 252
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CCAACGGCTCAGAATTGCAAATTCTTCAAATGGTGTGACAAAGTAACCGATGAAGATATC 240
Query 253 AAATTCCGTCCTGCCTTCACCATCCCGATTTGTTCCTGCGGTGCTGGACCTTGCCGGAGA 312
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGATTCCGTCCTGCCTTCACCATCCCGATTTGTTCCTGCGGTGCTGGACCTTGCCGGAGA 300
Query 313 GTTAAAGACGTTTCCGGTAGAGCTTACCTGATATGCTGCATCAAAAAGGGATTTGGAGCT 372
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 301 GTTAAAGACGTTTCCGGTAGAGCTTACCTGATATGCTGCATCAAAGAGGGTTTTGGAGCT 360
Query 373 TGTGGATTCTTCAAGTGGGAAGATGTTGAGATGATTCCTAGTTGTGATGTTATGGATGAG 432
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 361 TGTGGATTCTTCAAATGGGAAGATGTTGAGATGATTCCGAGTTGTGATGTAATGGATGAG 420
Query 433 ATTGATTTTTGGGTTGAAGCTGATCAAATTTTGAGTGATGTTGAGAGTAGCTTACAGGCT 492
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 ATTGATTTTTGGGTTGAAGCTGATCAAATTTTGAGTGATGTTGAGAGTAGCTTCCAGGCT 480
Query 493 CGTGGTGGTGTTATACCGGAAATTGCAAACCAAATGGCATCAGAGAAAGAATGTCAAGCT 552
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGTGGTGGCGTTATACCGGAAATTGCAAACCAAATGGCATCAGAGAAAGAATGTCAAGCT 540
Query 553 TCTGTTAGTGGTATAGAGGATGATT 577
|||||||||||| |||||||||||
Sbjct 541 TCTGTTAGTGGTGCAGAGGATGATT 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5