BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G13920.1 Length=1248 Score E Sequences producing significant alignments: (Bits) Value Ahg488218 jgi|Araly1|488218|fgenesh2_kg.6__1352__AT5G13920.1 952 0.0 > Ahg488218 jgi|Araly1|488218|fgenesh2_kg.6__1352__AT5G13920.1 Length=1194 Score = 952 bits (515), Expect = 0.0 Identities = 617/665 (93%), Gaps = 11/665 (2%) Strand=Plus/Plus Query 585 AGAATGTCAAGATTCTGTTA---GTGCAGAGGATGATTCTACATTAGAAAATTTGGATTC 641 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 528 AGAATGTCAAGCTTCTGTTAGTGGTGCAGAGGATGATTCTACATTAGAAAATTTGGATTC 587 Query 642 CATTTCAATGTCTGTTTCTGATGTACACTCTACTGCTCTGAACCAAGGTATCTCTCTGTT 701 || | |||||||||||||||||||||| | || ||||||||||||||||||| ||||||| Sbjct 588 CACTGCAATGTCTGTTTCTGATGTACATTTTATTGCTCTGAACCAAGGTATCCCTCTGTT 647 Query 702 TGATCCGGTTACGAGCGAACCTGAAGAGCCATGGAAAAAGACT-CAGAATGGTGATCAGC 760 ||| ||| || ||| ||||||||||||| |||||||||||||| || |||||||||||| Sbjct 648 TGAACCGTTTTCGATCGAACCTGAAGAGGCATGGAAAAAGACTCCA-CATGGTGATCAGC 706 Query 761 CAACAAATAGTGCTCTTTCTAAGTTGAGTGTGGATGAAGCGA-TGAGTGATTTGATCAGA 819 ||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||| Sbjct 707 CAACAAATAGTGCTCTTTCTAAGTTGAGTCTGGATGAAGC-AGTGAGTGATTTGATCAGA 765 Query 820 GATACGGTCTCTAGTGGTTCTGTTGTGATACATGGAAGGACAAACCATGAGCAACCTGAA 879 ||||| |||||||||||||||| |||||||||||||||||||| || ||||||||||| | Sbjct 766 GATACTGTCTCTAGTGGTTCTGCTGTGATACATGGAAGGACAACCCGTGAGCAACCTGGA 825 Query 880 ATTGATGGAGCTGAGTGGTCATTCCCTTGCTTGCAGAACCTAATTGATCAGTACAACTCA 939 |||| || |||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 826 ATTGGTGAAGCTGAGTGGTCATTCCCTTACTTGCAGGACCTAATTGATCAGTACAACTCA 885 Query 940 GAGAAGCTTCAATTGGAGAGTATTTCAGGGAAACATGTACAAATGTTGAGTGAATTTATG 999 |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 886 GAGAAGCTTCAATTGGAGAGTATTTCGGGGAAACATGTACAAGTGTTGAGTGAATTTATG 945 Query 1000 GCTTCGTACAGGCGACTAAGGTTACTTCATGAGAAAACTAGTCATCTCAGGAAAACTTTA 1059 |||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| Sbjct 946 TCTTCGTACAGGCGACTAAGGTTACTTCACGAGAAAACTTGTCACCTCAGGAAAACTTTA 1005 Query 1060 CTTGAAACAGAGAAGGAGATGGTTTGTTGTGAAG-CTGAGACATTAAAATTTGGAGCAAG 1118 |||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| Sbjct 1006 CTTGAAACAGAGAAGGAGATGGTTTGTTGTGA-GTCTGAGACATTAGAATTTGGAGCAAG 1064 Query 1119 TTGCAGGGAAGTGGCTGGAGAAATGGCTGAGTCTCAGAAGAGGATGCAGGAAACTGCAGA 1178 ||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1065 TTGTAGGGAAGTGGCTGGAGAAATGGCTGAGTCTCAGAAAAGGATGCAGGAGACTGCAGA 1124 Query 1179 TA-AACTAGGAAAAGAAGTAGAAGTGTTTAAGCAAAATGAGTTTGTTGGTCTAAAGAGAA 1237 | ||||||| ||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1125 -ACAACTAGGGAAAGAAGTAGAAGTGTTTAAGCAAAATGAGTTTGTTGCTCCGAAGAGAA 1183 Query 1238 GAAGA 1242 ||||| Sbjct 1184 GAAGA 1188 Score = 885 bits (479), Expect = 0.0 Identities = 537/565 (95%), Gaps = 3/565 (1%) Strand=Plus/Plus Query 16 ATGCAGACCGGAGATTGCTTCCGATGCCGTCAGGCTGGCCACTGGATCAACGATTGTCCT 75 |||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 1 ATGCAGACCGGAAATTGCTTCCGATGCCGTCAGGCTGGTCACTGGATCAGCGATTGTCCT 60 Query 76 CTCAAATCCTACACC---GATGATCCTCCACCGGCGATCCAATGCCCATGCGGCGGAGGT 132 ||||||||| | ||| ||||||||||||||||||||||| ||| | ||||| |||||| Sbjct 61 CTCAAATCCAAAACCGATGATGATCCTCCACCGGCGATCCACTGCACTTGCGGTGGAGGT 120 Query 133 TTCTGTGAAATCAAGGTCGCGAATACTCGAGAAAATCCCGGAAGGAAGTTCTACAAGTGT 192 ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 121 TTCTGCGAAATCAAGGTCGCGAATACTCGAGAAAATGCCGGAAGGAAGTTCTACAAGTGT 180 Query 193 CCAACGGCTCAGAATTGCTGTTTCTTCAAATGGTGTGACAAAGTAACCGACGAAGATATC 252 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 181 CCAACGGCTCAGAATTGCAAATTCTTCAAATGGTGTGACAAAGTAACCGATGAAGATATC 240 Query 253 AAATTCCGTCCTGCCTTCACCATCCCGATTTGTTCCTGCGGTGCTGGACCTTGCCGGAGA 312 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGATTCCGTCCTGCCTTCACCATCCCGATTTGTTCCTGCGGTGCTGGACCTTGCCGGAGA 300 Query 313 GTTAAAGACGTTTCCGGTAGAGCTTACCTGATATGCTGCATCAAAAAGGGATTTGGAGCT 372 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 301 GTTAAAGACGTTTCCGGTAGAGCTTACCTGATATGCTGCATCAAAGAGGGTTTTGGAGCT 360 Query 373 TGTGGATTCTTCAAGTGGGAAGATGTTGAGATGATTCCTAGTTGTGATGTTATGGATGAG 432 |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 361 TGTGGATTCTTCAAATGGGAAGATGTTGAGATGATTCCGAGTTGTGATGTAATGGATGAG 420 Query 433 ATTGATTTTTGGGTTGAAGCTGATCAAATTTTGAGTGATGTTGAGAGTAGCTTACAGGCT 492 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 421 ATTGATTTTTGGGTTGAAGCTGATCAAATTTTGAGTGATGTTGAGAGTAGCTTCCAGGCT 480 Query 493 CGTGGTGGTGTTATACCGGAAATTGCAAACCAAATGGCATCAGAGAAAGAATGTCAAGCT 552 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CGTGGTGGCGTTATACCGGAAATTGCAAACCAAATGGCATCAGAGAAAGAATGTCAAGCT 540 Query 553 TCTGTTAGTGGTATAGAGGATGATT 577 |||||||||||| ||||||||||| Sbjct 541 TCTGTTAGTGGTGCAGAGGATGATT 565 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46624327491 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5