BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13930.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488219 jgi|Araly1|488219|fgenesh2_kg.6__1353__AT5G13930.1 2324 0.0
> Ahg488219 jgi|Araly1|488219|fgenesh2_kg.6__1353__AT5G13930.1
Length=1490
Score = 2324 bits (1258), Expect = 0.0
Identities = 1423/1500 (95%), Gaps = 21/1500 (1%)
Strand=Plus/Plus
Query 3 AAATACACCTAACTTGTTTAGTACACAACAGCAACATCAAACTCTAATAAACCCAAGTTG 62
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 1 AAATACACCTAACTTGTTTAGTACAC-A-A-CAACATCAAACTCTAATAAACCCAAGTTG 57
Query 63 GTGTATACTATAATGGTGATGGCT---GGTGCTTCTTCTTTGGATGAGATCAGACAGGCT 119
|||| || |||||||||||||||| || || ||||| ||||||||||||||| |||||
Sbjct 58 GTGTGTAATATAATGGTGATGGCTGCAGGAGCGTCTTCGTTGGATGAGATCAGAAAGGCT 117
Query 120 CAGAGAGCTGATGGACCTGCAGGCATCTTGGCTATTGGCACTGCTAACCCTGAGAACCAT 179
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 118 CAGAGAGCTGATGGACCTGCAGGGATCTTGGCTATTGGCACGGCTAACCCTGAGAACCAT 177
Query 180 GTGCTTCAGGCGGAGTATCCTGACTACTACTTCCGCATCACCAACAGTGAACACATGACC 239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 178 GTGCTTCAGGCGGAGTATCCTGACTACTACTTCCGAATCACCAACAGTGAACACATGACC 237
Query 240 GACCTCAAGGAGAAGTTCAAGCGCATGTGCGACAAGTCGACAATTCGGAAACGTCACATG 299
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 238 GACCTCAAGGAGAAGTTCAAGCGCATGTGCGACAAGTCGATGATTCGGAAACGCCACATG 297
Query 300 CATCTGACGGAGGAATTCCTCAAGGAAAACCCACACATGTGTGCTTACATGGCTCCTTCT 359
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 298 CATCTGACAGAGGACTTCCTCAAGGAAAACCCACACATGTGCGCTTACATGGCTCCTTCT 357
Query 360 CTGGACACCAGACAGGACATCGTGGTGGTCGAAGTCCCTAAGCTAGGCAAAGAAGCGGCA 419
|| |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 358 CTAGACACCCGACAGGACATCGTTGTGGTTGAAGTCCCTAAGCTAGGCAAAGAAGCGGCA 417
Query 420 GTGAAGGCCATCAAGGAGTGGGGCCAGCCCAAGTCAAAGATCACTCATGTCGTCTTCTGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTGAAGGCCATCAAGGAGTGGGGCCAGCCCAAGTCAAAGATCACTCATGTCGTCTTCTGC 477
Query 480 ACTACCTCCGGCGTCGACATGCCTGGTGCTGACTACCAGCTCACCAAGCTTCTTGGTCTC 539
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ACTACCTCTGGCGTCGACATGCCTGGTGCTGACTACCAGCTCACCAAGCTTCTTGGTCTC 537
Query 540 CGTCCTTCCGTCAAGCGTCTCATGATGTACCAGCAAGGTTGCTTCGCCGGCGGTACTGTC 599
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 538 CGTCCTTCCGTCAAGCGTCTCATGATGTACCAACAAGGTTGCTTCGCCGGCGGCACTGTC 597
Query 600 CTCCGTATCGCTAAGGATCTCGCCGAGAACAATCGTGGAGCACGTGTCCTCGTTGTCTGC 659
||||||||||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct 598 CTCCGTATCGCTAAGGACCTTGCCGAGAACAACCGCGGAGCTCGTGTCCTTGTCGTCTGC 657
Query 660 TCTGAGATCACAGCCGTTACCTTCCGTGGTCCCTCTGACACCCACCTTGACTCCCTCGTC 719
|||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 658 TCTGAGATCACAGCTGTCACCTTCCGTGGCCCCTCTGACACCCACCTCGACTCCCTCGTC 717
Query 720 GGTCAGGCTCTTTTCAGTGATGGCGCCGCCGCACTCATTGTGGGGTCGGACCCTGACACA 779
|||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||
Sbjct 718 GGTCAGGCTCTTTTCAGTGACGGCGCTGCCGCACTCATCGTGGGCTCGGACCCTGACACA 777
Query 780 TCTGTCGGAGAGAAACCCATCTTTGAGATGGTGTCTGCCGCTCAGACCATCCTTCCAGAC 839
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct 778 TCTGTCGGAGAGAAACCCATCTTCGAGATGGTGTCCGCCGCCCAGACCATCCTGCCAGAC 837
Query 840 TCTGATGGTGCCATAGACGGACATTTGAGGGAAGTTGGTCTCACCTTCCATCTCCTCAAG 899
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 838 TCTGATGGTGCCATAGACGGACACTTGAGGGAAGTGGGTCTCACCTTCCATCTCCTCAAG 897
Query 900 GATGTTCCCGGCCTCATCTCCAAGAACATTGTGAAGAGTCTAGACGAAGCGTTTAAACCT 959
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 898 GATGTCCCCGGCCTCATCTCGAAGAACATTGTTAAGAGTCTAGACGAAGCGTTTAAACCT 957
Query 960 TTGGGGATAAGTGACTGGAACTCCCTCTTCTGGATAGCCCACCCTGGAGGTCCAGCGATC 1019
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTGGGGATTAGTGACTGGAACTCCCTCTTCTGGATAGCCCACCCTGGAGGTCCAGCGATC 1017
Query 1020 CTAGACCAGGTGGAGATAAAGCTAGGACTAAAGGAAGAGAAGATGAGGGCGACACGTCAC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CTAGACCAGGTGGAGATAAAGCTAGGACTAAAGGAAGAGAAGATGAGGGCGACACGTCAC 1077
Query 1080 GTGTTGAGCGAGTATGGAAACATGTCGAGCGCGTGCGTTCTCTTCATACTAGACGAGATG 1139
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1078 GTGTTGAGCGAGTATGGAAACATGTCTAGCGCGTGCGTTCTCTTTATACTAGACGAGATG 1137
Query 1140 AGGAGGAAGTCAGCTAAGGATGGTGTGGCCACGACAGGAGAAGGGTTGGAGTGGGGTGTC 1199
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1138 AGGAGGAAGTCAGCCAAGGATGGTGTGGCCACTACAGGAGAAGGGTTGGAGTGGGGTGTC 1197
Query 1200 TTGTTTGGTTTCGGACCAGGTCTCACTGTTGAGACAGTCGTCTTGCACAGCGTTCCTCTC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TTGTTTGGTTTCGGACCAGGTCTCACTGTTGAGACAGTCGTCTTGCACAGCGTTCCTCTC 1257
Query 1260 TAA-ACAGAACGCTTGCCTTCTATCTGCCTACCTAC-CTACGCAAAACTTTAATCCTGTC 1317
||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1258 TAATA-AGAACGCTTTCCTTCTATCTGCCTACCTACACTACGCAAAACTTTAATCCTGTC 1316
Query 1318 TTATGTTTTATATAATATAATCATTATATGTTTACGCAATAATTAAGGAAGAATTCATTT 1377
|||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||
Sbjct 1317 TTATGTTTTATATAATATAATC-T-AT--GTTTATGCAATAATTAAGGAAGAATTCATTT 1372
Query 1378 GATGTGATATGTGAT---A--TGTGCTGGACAGGTCTATTCGACTGtttttgtactctct 1432
||||||||||||||| | |||||||||||||||||||||||| ||||||||| || |
Sbjct 1373 GATGTGATATGTGATTTGAAATGTGCTGGACAGGTCTATTCGACTATTTTTGTAC-CT-T 1430
Query 1433 tt-tttgtgtctttttACAATATTAAATCTATGGGTCTTGAATGACATCAAATCTTTGTT 1491
|| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1431 TTGTTTGTGTCTTTTTACAATATTAAATCTACGGGTCTTGAATGACATGAAATCTTTGTT 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5