BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13940.1
Length=2430
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325866 jgi|Araly1|325866|fgenesh1_pm.C_scaffold_6001086 1448 0.0
Ahg481277 jgi|Araly1|481277|fgenesh2_kg.4__337__AT2G24200.1 204 3e-51
> Ahg325866 jgi|Araly1|325866|fgenesh1_pm.C_scaffold_6001086
Length=1188
Score = 1448 bits (784), Expect = 0.0
Identities = 874/918 (95%), Gaps = 4/918 (0%)
Strand=Plus/Plus
Query 1515 GATTGATATTAGTATTGAAACAGAGAAGGATAGTTTATACATCGAAAGAATCCGCATAGA 1574
|||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 273 GATTGATATTAGAATTGAAACAGAGAAGGATAGTTTATACATTGAAAGAACCCGCATAGA 332
Query 1575 GAAGCTCAAGCTCAGTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTT 1634
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 333 GAAGCTCAAGCTCAGTCTCTCCAACTTGATGAAAAAGATAACAATCCAAGAGCCTACCTT 392
Query 1635 TGAGAGAATCATTGTAGTATACAGGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACAT 1694
|||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 393 TGAGAGGATCATTGTAGTATACAGGAGAGTTTCAGGGAAGAAGGAAGCAGAAAGGAACAT 452
Query 1695 ATATGTGAAACACTTTAAGACCATTCCAATGGCTGATATGGAAATTGTGCTTCCAGAGAA 1754
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 453 ATATGTGAAACACTTTAAGACCATTCCAATGGCTGATATGGAAATCGTGCTTCCAGAGAA 512
Query 1755 GAAGAATCCAGGTCTTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGG 1814
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 GAAAAATCCAGGTCTTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGG 572
Query 1815 ACTGGTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAG-CTGATATCAGAGTCATTGCAG 1873
|||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 573 ACTGGTAACAGTGGTAAGTTCAGTGAGCCTC-AAAAAGACTGATATCAGAGTCATTGCAG 631
Query 1874 CCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACGTTTCAAAGAAACT 1933
| ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 632 CTATACTTAGCACGGTCGTGGCCTACTGCGTTAAAACATATTTCACGTTTCAGAGAAACT 691
Query 1934 TGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTATGATAAGCAGCTAGACAGTGGAA 1993
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 692 TGGTAGATTATCAGAGCCTTATCACAAGATCTGTGTATGATAAGCAGCTAGACAGTGGAA 751
Query 1994 GAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAGGTTAAAGAGGTCATCA 2053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 GAGGTACTCTGCTTCACTTGTGTGATGAAGTCATCCAACAAGAGGTTAAAGAGGTCATCA 811
Query 2054 TTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCCACAAGCAAGGAGGAGCTTGACATGA 2113
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 812 TTTCGTTTTTCATGCTGATCAAGAAAGGGTGTCCTACAAGCAAGGAAGAGCTTGACATGC 871
Query 2114 AAAGTGAAGCATTCATCAAAGAAGAATTTAACGAAAGCTGCAATTTCGACGTGGATGATG 2173
|||||||||||||||||||| ||||||| || ||||||||||||||||| || |||||||
Sbjct 872 AAAGTGAAGCATTCATCAAAAAAGAATTCAATGAAAGCTGCAATTTCGATGTAGATGATG 931
Query 2174 CTATCACAAAGCTTGAGAAGCTTGGACTTGTATCTCGTGATTCAGAAGACAAGTATAGAT 2233
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 CTATCACGAAGCTTGAGAAGCTTGGACTTGTATCTCGTGATTCAGAAGACAAGTATAGAT 991
Query 2234 GCGTGGAAATGAAGGAAGCAAACGAGATAATGGGGACAACTACGGAAGAGATGGTACTCA 2293
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 ACGTGGGTATGAAGGAAGCAAACGAGATAATGGGGACAACTACGGAAGAGATGGTACTCA 1051
Query 2294 AGGCAAGACAAGGTGGAGAATATGAAGACGAGGATACAACAGCGACA-GAGCCTCAAATG 2352
|||||||| ||||||||||||||||||||||||| ||||||| || | ||||||||| ||
Sbjct 1052 AGGCAAGAAAAGGTGGAGAATATGAAGACGAGGAAACAACAGAGA-ATGAGCCTCAATTG 1110
Query 2353 AATCCTCAAGATAAACTTACAGCAAAGGAGGAACGTTTTCAATCTCGGTATGATGAGTTT 2412
|||||||||||| ||||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct 1111 AATCCTCAAGATGAACTTACCGCAAAGGAAGAACGTTTTCAATCTCGATATGACGAGTTT 1170
Query 2413 GAGACCTTGTGGATGTAA 2430
||| ||||||||||||||
Sbjct 1171 GAGTCCTTGTGGATGTAA 1188
Score = 390 bits (211), Expect = 2e-107
Identities = 264/287 (92%), Gaps = 14/287 (5%)
Strand=Plus/Plus
Query 1177 ATGGAGAAGAGCAACTTCAAAGTGATAACTAATGAAGAAATACAAGTAGCCCTCTCTGCT 1236
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAGAAGAGCAACTTCAAAGTGATAACTAATGAAGAAATACAAGTAGCTCTCTCTGCT 60
Query 1237 CAATATCGTCTCAATCTTCCTATTGTTGTTAATGAAGCTAAGCTTGATACAAAGTTGTTA 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAATATCGTCTCAATCTTCCTATTGTTGTTAATGAAGCTAAGCTTGATACAAAGTTGTTA 120
Query 1297 ACAAGATACTTCTCCAAGTTTCCGCGTGATGATCTTCCTCATTTCGCTGATAAGTATATA 1356
||||||| |||| |||||||||| || ||||||||||||| ||||||||||||| |
Sbjct 121 ACAAGATTCTTCACCAAGTTTCCCCGGGATGATCTTCCTCGTTTCGCTGATAAG-A---- 175
Query 1357 ATATTCAGACGTGGGTTTGGGATAGATCATATGAAAGCTTACTTCTTCCTAGCCAAAATA 1416
| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 -----C-G---TGGGTTTGGGATAGATCATATGAAAGCTTACTTCTTCCTAGCCAAAATA 226
Query 1417 GATACAATCCTTGTCCGTATTTGGCACTTTCTACTCACCATCACATG 1463
|||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct 227 GATACAATCCTTGTCCGTATTTGGAACTTTCTTCTCACTATCACATG 273
> Ahg481277 jgi|Araly1|481277|fgenesh2_kg.4__337__AT2G24200.1
Length=1783
Score = 204 bits (110), Expect = 3e-51
Identities = 142/157 (90%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 196 TCTACGTACAGTGATGTCTTCACTGCAAACACCTTGAACGAAGAG-AGATGCA-AAGAGT 253
||||||||||||||||||||||||||||||| ||||||||||||| | ||||| || |||
Sbjct 760 TCTACGTACAGTGATGTCTTCACTGCAAACATCTTGAACGAAGAGCA-ATGCAGAA-AGT 817
Query 254 TGAAGATGGGTACTTACCTATCTGTTGCTGCTGCCTCGGCGAATCCCCATCATTTCATCC 313
||||||||||| | || ||| ||||||||||||||||||||||||||| | |||||||||
Sbjct 818 TGAAGATGGGTTCCTATCTAGCTGTTGCTGCTGCCTCGGCGAATCCCCCTTATTTCATCC 877
Query 314 ACCTTGTCTATAAACCTGCCAGTGGCTCTGCTAGGAC 350
||||||| ||||||||| |||||||||||| || |||
Sbjct 878 ACCTTGTTTATAAACCTTCCAGTGGCTCTGTTAAGAC 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91568948980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5