BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13960.1
Length=2212
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488222 jgi|Araly1|488222|fgenesh2_kg.6__1356__AT5G13960.1 3365 0.0
> Ahg488222 jgi|Araly1|488222|fgenesh2_kg.6__1356__AT5G13960.1
Length=2177
Score = 3365 bits (1822), Expect = 0.0
Identities = 2067/2185 (95%), Gaps = 17/2185 (1%)
Strand=Plus/Plus
Query 36 TCTTCGTCGTCTTCACAGTTTCAATCTCGCGCTGCTTAGTCTCCTTCCGTCTCTTCTTCT 95
||||||||||| |||||||||||||||| |||||||| | | ||||| |||||||||||
Sbjct 1 TCTTCGTCGTCATCACAGTTTCAATCTCTCGCTGCTT-G-GT-CTTCCCTCTCTTCTTCT 57
Query 96 CCGCTAGCTTTTCCAGGGGAAAAAGAGTGATCGATGGCTGGAAAAAGGAAACGAGCTAAT 155
||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 58 CCGCTAGCTATTCCTGGGGAAAAAGAGTGATTGATGGCTGGAAAAAGGAAACGAGCTAAT 117
Query 156 GCTCCTGACCAAACAGAGCGAAGATCGAGTGTTCGGGTTCAGAAAGTGAGACAGAAA-GC 214
||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| ||
Sbjct 118 GCTCCTGACCAAACAGAGCGAAGATTGAGTGTTCGGGTTCAGGAAGTGAGACA-AAAGGC 176
Query 215 GTTAGATGAGAAGGCGCGTTTAGTACAGGAGAGGGTTAAGCTCCTCAGTGACAGAAAGAG 274
| |||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||||
Sbjct 177 GCTAGATGAGAAGGAGCGTTTAGTACGGGAGAGGGTTAAACTCCTCAGTGACAAAAAGAG 236
Query 275 TGAAATTTGTGTCGATGACACTGAGTTACATGAGAAAGAAGAGGAAAATGTCGATGGGAG 334
|||| ||| ||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 237 TGAACTTTTTGTCGATGACACTGATTTACATGAGAAGGAAGAGGAGAATGTCGATGGGAG 296
Query 335 CCCTAAACGAAGAAGCCCTCCAAAGCTAACCGCAATGCAGAAAGGAAAGCAGAAATTGAG 394
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 297 CCCTAAACGAAGAAGCCCTCCAAAGCTATCAGCAATGCAGAAAGGAAAGCAGAAATTGAG 356
Query 395 TGTTTCTCTGAATGGTAAGGACGTGAACTTGGAAC-CTCATCTCAAAGTGACAAAGTGTC 453
|||||||| |||||| |||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 357 TGTTTCTCCGAATGGCAAGGACGTGAACTTGG-ACGCTCATCTCAAAGTCACAAAGTGTC 415
Query 454 TGA-GGTTATTTAACAAGCAATATCTCCTCTGTGTCCAGGCTAAGTTGAGCAGGCCTGAT 512
||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 416 TGAGGGTT-TTTAACAAGCAATATCTCCTCTGTGTCCAGGCTAAGTTGAGCAGACCTGAT 474
Query 513 TTGAAGGGTGTAACTGAGATGATAAAAGCTAAGGCGATATTGTACCCAAGAAAAATAATC 572
||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| ||||
Sbjct 475 TTGAAGGGTATAACTGAGATGATTAAAGCCAAGGCGATATTGTACCCAAGAAAATTAATT 534
Query 573 GGTGACCTTCCAGGTATAGACGTTGGACACCGttttttttCAAGAGCTGAAATGTGTGCT 632
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 535 GGTGACCTTCCAGGTATTGACGTTGGACACCGATTTTTTTCAAGAGCTGAAATGTGTGCT 594
Query 633 GTAGGATTCCATAACCATTGGCTAAATGGCATTGATTATATGTCAATGGAATACGAAAAA 692
||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 595 GTAGGCTTCCATAACCATTGGCTAAATGGGATCGATTATATGGGAATGGAATACGAAAAA 654
Query 693 GAGTATAGTAACTACAAATTACCGCTTGCTGTTTCTATTGTTATGTCGGGCCAGTACGAG 752
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 655 GAGTATAGTAACTACAAGTTTCCGCTTGCTGTTTCTATCGTTATGTCGGGCCAGTACGAG 714
Query 753 GATGATCTAGACAATGCAGATACAGTGACTTACACTGGACAGGGAGGGCATAACTTAACT 812
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 715 GATGATCTAGACAATGCAGATACGGTGACTTACACTGGACAGGGAGGGCACAACTTAACT 774
Query 813 GGTAATAAACGTCAGATAAAGGATCAACTTTTAGAACGAGGGAATTTGGCGCTAAAGCAC 872
||||||||||| ||||| ||||||||||| ||| |||||||||||||||| |||||| ||
Sbjct 775 GGTAATAAACGCCAGATTAAGGATCAACTCTTACAACGAGGGAATTTGGCCCTAAAGAAC 834
Query 873 TGCTGCGAATATAATGTGCCTGTCAGAGTAACTCGTGGTCACAATTGCAAAAGTAGCTAT 932
|||||||||||||| || ||||||||||||||||||||||| |||||| ||||||||||
Sbjct 835 TGCTGCGAATATAACGTACCTGTCAGAGTAACTCGTGGTCATGATTGCATAAGTAGCTAT 894
Query 933 ACCAAACGAGTATACACTTATGATGGACTGTACAAGGTTGAAAAGTTCTGGGCACAAAAG 992
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 ACCAAAAGAGTATACACTTATGATGGACTGTACAAGGTTGAAAAGTTCTGGGCACAAAAG 954
Query 993 GGCGTTTCAGGATTTACAGTGTATAAGTACCGACTGAAACGATTGGAGGGGCAACCAGAA 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GGCGTTTCAGGATTTACAGTGTATAAGTACCGACTGAAACGATTGGAGGGGCAACCAGAA 1014
Query 1053 CTAACTACTGATCAGGTCAACTTTGTTGCTGGACGCATACCAACGAGTACTTCAGAAATT 1112
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1015 CTAACTACTGATCAGGTCAACTTTGTTGCTGGACGCATACCAAAGTCTACTTCAGAAATT 1074
Query 1113 GAGGGTTTGGTATGTGAGGACATCTCCGGAGGGCTAGAATTTAAGGGTATCCCCGCCACT 1172
|||||||||||||| || |||||||||||||||||||||||||||||||| || |||||
Sbjct 1075 GAGGGTTTGGTATGCGAAGACATCTCCGGAGGGCTAGAATTTAAGGGTATTCCAGCCACA 1134
Query 1173 AATCGTGTTGATGATTCACCAGTTTCACCAACATCTGGTTTCACATACATCAAATCTTTG 1232
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1135 AATCGTGTTGATGATTCACCAGTTTCACCATCATCAGGTTTCACATACATCAAATCTTTG 1194
Query 1233 ATTATTGAGCCTAATGTCATAATTCCAAAGAGTTCAACTGGGTGTAACTGCCGAGGCAGC 1292
||||||| ||||||||||| ||| |||||||||||||||||||||||||||| |||||||
Sbjct 1195 ATTATTGGGCCTAATGTCAAAATCCCAAAGAGTTCAACTGGGTGTAACTGCCAAGGCAGC 1254
Query 1293 TGCACTGACTCAAAGAAATGTGCATGTGCTAAGCTTAATGGGGGTAACTTTCCATATGTT 1352
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1255 TGCACTGACTCAAAGAAATGTGCATGTGCTAAGCTTAATGGGGGAAACTTTCCATATGTT 1314
Query 1353 GACCTTAATGATGGCAGATTAATTGAGTCTCGAGATGTTGTATTTGAATGTGGTCCTCAC 1412
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1315 GACCTTAATGATGGCAGATTAATTGAGCCTCGAGATGTTGTATTTGAATGTGGTCCACAC 1374
Query 1413 TGTGGGTGTGGGCCAAAATGTGTCAACCGAACTTCTCAGAAGCGTCTAAGATTCAATCTT 1472
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1375 TGTGGGTGTGGGCCAAAATGTGTTAACCGAACTTCTCAGAAGCGTCTAAGATTTAATCTT 1434
Query 1473 GAGGTTTTCCGCTCTGCAAAGAAGGGTTGGGCAGTTAGATCATGGGAGTACATACCAGCT 1532
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1435 GAGGTTTTCCGCTCTGCAAAGAAGGGTTGGGCAGTTAGATCATGGGACTACATACCAGCT 1494
Query 1533 GGTTCACCAGTATGTGAGTACATAGGAGTTGTCAGGAGAACTGCTGATGTGGATACTATC 1592
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1495 GGTTCACCAGTATGTGAGTACATAGGAGTCCTCAGAAGAACTGCTGATGTGGATACTATC 1554
Query 1593 TCTGACAATGAATACATATTTGAGATTGACTGCCAACAGACAATGCAAGGTCTTGGTGGA 1652
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TCTGACAATGAATACATATTCGAGATTGACTGCCAACAGACAATGCAAGGTCTTGGTGGA 1614
Query 1653 AGACAGAGAAGACTAAGAGATGTTGCTGTACCAATGAATAATGGAGTCAGTCAGAGCAGT 1712
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 AGACAGAGAAGACTAAGGGATGTTGCTGTACCAATGAATAATGGAGTCAGTCAGAGCAGT 1674
Query 1713 GAAGATGAGAATGCGCCAGAGTTCTGCATTGATGCTGGTTCAACAGGAAACTTTGCTAGG 1772
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1675 GAAGATGAGAATGTACCAGAGTTCTGTATTGATGCTGGTTCAACAGGAAACTTTGCTAGG 1734
Query 1773 TTTATAAATCACAGTTGTGAACCAAACCTATTTGTTCAGTGCGTCCTGAGTTCTCACCAG 1832
||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 1735 TTTATAAATCACAGTTGTGAACCAAACCTGTTCGTTCAGTGTGTCCTGAGTTCTCACCAG 1794
Query 1833 GATATAAGGCTTGCCCGTGTGGTTCTTTTCGCAGCTGACAACATTTCCCCAATGCAGGAG 1892
||| ||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 1795 GATCTAAGGCTTGCCCGCGTGGTTCTTTTTGCAGCTGACAACATTTCACCACTGCAGGAG 1854
Query 1893 CTCACTTACGACTATGGATATGCGCTTGATAGCGTTCATGGACCGGATGGGAAGGTGAAG 1952
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1855 CTAACTTACGACTATGGATATGCGCTTGATAGCGTTCATGGGCCGGATGGGAAGGTGAAG 1914
Query 1953 CAGCTCGCTTGCTACTGTGGAGCGCTAAATTGTAGGAAACGCCTTTACTAACAAAGGCTA 2012
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1915 CAGCTCACTTGCTACTGTGGAGCGCTAAATTGTAGGAAACGCCTATACTAACAA-GGCTA 1973
Query 2013 TTGGTGAA-CTTATTTTTTGGTCACTCTATTTTGGGGAGTACATAGATAGCAACTATCTC 2071
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1974 TTGGT-AAGCTTATTTTTTGGTCACTCTATTTTGGGGAGTACATAGATAGCAACTATCTC 2032
Query 2072 CCAAGTGGAAGAACCCTTCACATTTTATTTAAGGGACTTTAGCTTCTTCTGCAGCGTAC- 2130
|||||||||||||||||| |||| |||||| |||||||||||| |||||||||||||||
Sbjct 2033 CCAAGTGGAAGAACCCTTAACATCTTATTTGAGGGACTTTAGCATCTTCTGCAGCGTACA 2092
Query 2131 ----GTGCTGCCTTTTTCGGCATTGTTGTTTCCTGAATTCTATTGTTGCCATTGGCATCT 2186
||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2093 ATTAGTGCTGCCTTTTTCGGCATTGTTGTTTCCTGAACCCTATTGTTGCCATTGGCATCT 2152
Query 2187 TATCTATCGGGTCAACAATATTAAT 2211
||||||||||||||||| |||||||
Sbjct 2153 TATCTATCGGGTCAACAGTATTAAT 2177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83265275570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5