BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13970.1
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488223 jgi|Araly1|488223|fgenesh2_kg.6__1357__AT5G13970.1 1829 0.0
> Ahg488223 jgi|Araly1|488223|fgenesh2_kg.6__1357__AT5G13970.1
Length=1350
Score = 1829 bits (990), Expect = 0.0
Identities = 1264/1389 (91%), Gaps = 47/1389 (3%)
Strand=Plus/Plus
Query 24 AAATTCGTTTTTGCAATGGATGAGA-GTTTCAGAGTGAGGATAGACAAGGTTTTTGGATC 82
||||||||| ||||||||||||| | ||||||||| ||||| |||||||||||||||||
Sbjct 1 AAATTCGTTCTTGCAATGGATGA-ATCTTTCAGAGTAAGGATCGACAAGGTTTTTGGATC 59
Query 83 TCTTGCATCATCTTCTACGTCTTCAGCACCTGTGAGCTCTCTCTGGTGTCTCGCGGAAGA 142
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTTGCATCATCATCTGCGTCTTCAGCACCTGTGAGCTCTCTCTGGTGTCTCGCGGAAGA 119
Query 143 CGAGATCGATGGAAACCAACGGAGCGGAGAAAAGGAACTTTCTGAATCATTGAACAGCTT 202
||||| ||| | |||||||| ||||||||||||||| | | || || | | |
Sbjct 120 TGAGATTGATAGCAACCAACGAAGCGGAGAAAAGGAA--AT-T---TC--TG-A-A---T 166
Query 203 CTCGGATAATGGAAAGCAGGAGCATGAA-TCAGATGATTTGAGCATAGATGAGGAAAAAG 261
| | | |||||||| ||||| | ||| ||||||| | |||||||||||||||
Sbjct 167 C-C--------G--AGCAGGAGAATGAAGT-AGAAGATTTGAACGTAGATGAGGAAAAAG 214
Query 262 GAAGGTCTAGTGAATTGCAGAAGCCGAGTGATTACGATGACGAAGAGTGGGAGATCAAAA 321
||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 215 GAAAGTGTAGTGAATTGCAGAAGCCGAGCGATTACGATGACGAAGAGTGGGAGATCAAAA 274
Query 322 ACTCAATTGGGATGGACTCTACTCTTGATATGGAGGAAG-AGCTAGATGATAATGACAAA 380
|||| |||||||||||||| ||||||||||||||||||| || ||||||||||||||||
Sbjct 275 ACTCCATTGGGATGGACTCCACTCTTGATATGGAGGAAGAAG-AAGATGATAATGACAAA 333
Query 381 GTGGCATTAGGTGAAAAAGTGTACTGTTGCATGAAGGATGTGAATGACGACTATGAGACT 440
||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 334 GTGGCTTTAGGTGAAAAAGTGTACTCTTGCATGAAGGATGTGAAT---GACTATGAGACT 390
Query 441 GAAGCAGACGAGTGGGTGGAGCTTCCAGCTTCTTTCAATGAAAGAGAGAAGGACCCTCGA 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 GAAGCAGACGAGTGGGTGGAGCTTCCAGCTTCTTTCAATGAAAGAGAGAAGGACCCTCGA 450
Query 501 GCTAATCTCATAGCAGCAAAGCTTAGGCTTAAAGAGGACGCAGAAGCTGTTAACAAGTTG 560
||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 451 GCTAATCTCATTGCTGCAAAGCTTAGGCTTAAAGAAGACGCTGAAGCTGTTAACAAGTTG 510
Query 561 AATTCTTTACATGTCTCTGAGGAACTTCAGGATAATCTGTCCATGTCGACGGAAAACGAG 620
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 511 AATTCTTTACATGTCTCTGAGGAACTTCAGGACAATCTGTCCATGTCGACGGAAAACGAG 570
Query 621 AAACCTTTTGTGGTGTCTGAAGATAACTTGCTGGGGGCTTTCAAGGAGTCACATGTTGGC 680
|||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 571 AAACCTTTGGTGGTGTCTGAAGATAACTTGCTGGGGACTTGCAAGGAGTCACATGTTGGC 630
Query 681 TCTTCAGATGAGAATGGGCT-GAAACCGATATTGAAGAGGAGAGAAAACCAGGCTGATGA 739
||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 631 TCTTCAGATGATAATGG-CTTGAAACCGATATTGAAGAGGAAAGAAAACCAGGCTGATGA 689
Query 740 TTCTAAGTCGCCA-AAGCGTGTTAGGTTTAGTTCTGATGTCAAAGATAGG-ACCTTGACT 797
|||||||| || | ||||||||| ||||||| ||||||||||||||| || | ||||||
Sbjct 690 TTCTAAGTTGC-AGAAGCGTGTTCGGTTTAGCTCTGATGTCAAAGAT-GGTAACTTGACG 747
Query 798 GAAGGTGACAACGATTCTGTGATGGAGGCAAGTTCCCCTAACGAAGATAAAGTAGAGGCA 857
||||||||||| ||||||||||||||| | ||||||||| ||||| ||||||||||||||
Sbjct 748 GAAGGTGACAAAGATTCTGTGATGGAGACTAGTTCCCCTGACGAACATAAAGTAGAGGCA 807
Query 858 GTCTATCCGACTGGGATTCCAGATTATATGCGGAACCCATCAAAATACACTCGATATACA 917
| |||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 808 GACTATCCGATTGGGAGTCCTGATTATATGCGGAACCCATCAAAATACACTCGATATACA 867
Query 918 TTCGAGTCAGGTGAGGTTGATGAAGAATCCAACAGGAAAGCATACATGGACTTTCTCAAC 977
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 868 TTCGATTCAGGTGAGGTTGATGAAGAATCCAACCGGAAAGCATACATGGACTTTCTCAAC 927
Query 978 ATGATTAGGAGCAAAGACGAGTCC-CTTGTAGACCCTCTGATGGAGCTTCCAAGATCAGT 1036
||||||||||| ||||| ||| || ||||||||||||||| | |||||||||||||||||
Sbjct 928 ATGATTAGGAGGAAAGATGAG-CCTCTTGTAGACCCTCTGGTAGAGCTTCCAAGATCAGT 986
Query 1037 GGCTTTCGTACCAAAGAGAAAACCAATGGCTGAGAGTAAAGTAGAAAATATAGACAAGGA 1096
|||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |||||
Sbjct 987 GGCTTTTGTACCAAAGAAAAAACCAATGGCTGAAAGTAAAGTAGAAAATATAGAGAAGGA 1046
Query 1097 TTGTGAGGGAAGAAGAGTTGCAATAGCTGTTGATACTATAGAAGACTGCACCATTTCTGC 1156
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1047 TTGTGAGGGAAGAAGAGTTGCAATAGCTGTTGATACCATAGAAGACTGCACCATATCTGC 1106
Query 1157 TATGGAAGAAGATGAACCAGAAACAGCTCAACATGTCACAAAAAGACCTGGCCGACAGTA 1216
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1107 TATGGAAGAAGATGAACCAGAAACAGCTCCACATGTCACAAAAAGACCCGGCCGACAGTA 1166
Query 1217 TCGTGCCAGAGCCAAGGAAGATCCAGAGGAATGTTGAAGATCATCAACCTTAGCTTGCTG 1276
||| |||||||| |||||||||| ||||||||||||||||||| ||| ||| || | |
Sbjct 1167 TCGAGCCAGAGCTAAGGAAGATCAAGAGGAATGTTGAAGATCAACAAACTT-GC--G--G 1221
Query 1277 ATTTGTTACGTTTTCTTTATGTTTCTTGAATGTGGTATTTGA-TAGGTATTTGATGATTA 1335
||||||||| ||||||||| |||||||||||||| | |||| |||||||| |||||| |
Sbjct 1222 ATTTGTTACTTTTTCTTTAAATTTCTTGAATGTGGCAGTTGAATAGGTATTGGATGATAA 1281
Query 1336 AGAAATCAAATTTGTTTTGACAAACGATATGCTACGTCTACTGTATCTAATATCTATCAT 1395
|||||||||||||| || |||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1282 AGAAATCAAATTTGCTTCGACAAATGATATGTTACGTCTACTGTATCTAATATCTATCAT 1341
Query 1396 AAGCCAGTC 1404
|||||||||
Sbjct 1342 AAGCCAGTC 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52488357610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5