BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13990.1
Length=2325
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488227 jgi|Araly1|488227|fgenesh2_kg.6__1361__AT5G13990.1 3807 0.0
> Ahg488227 jgi|Araly1|488227|fgenesh2_kg.6__1361__AT5G13990.1
Length=2332
Score = 3807 bits (2061), Expect = 0.0
Identities = 2247/2336 (96%), Gaps = 15/2336 (1%)
Strand=Plus/Plus
Query 1 AATCGCCTCTCTAACCACAAATCCTAAAAGTCTAAACGAAAACAGAACACATGAATCTCT 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCGCTTCTCTAACCACAAATCCTAAAAGTCTAAACGAAAACAGAACACATGAATCTCT 60
Query 61 CCTTCCTCTGCATCTCAATTCCACTTCGCCATTTTTAAAGCTTTTTACGTAAATAATAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTTCCTCTGCATCTCAATTCCACTTCGCCATTTTTAAAGCTTTTTACGTAAATAATAAG 120
Query 121 AAACCATGGAGAAG---AACGACAAGGACCCTGATCATGATGACAAATCCAAGGGAGAT- 176
|||| ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 121 AAACGATGGAGAAGAACAACGACAAGGATCCTGATCATGATGACAAATCCAAGGAAGATG 180
Query 177 -G-AGAAAGGCGACGTCGTTTCGGATGCTCATCCCTCAGATGATGCGCATCATCAGGATG 234
| ||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||
Sbjct 181 AGAAGAAAGGCGACGTCGTTTCTGATGCTCATCTCTCAGATGATGTG---CATCAGGATG 237
Query 235 GTATC---AGTAACGAAAATGTAGATGTTGTTGGTAATGCGGAGACAGATCATCAAGATC 291
||| | | ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GTAGCAATAATAAAGAGAATGTAGATGTTGTTGGTAATGCGGAGACAGATCATCAAGATC 297
Query 292 CAGGAGATAACAATGTCGACAAGGTTTCACAAGGAGAAGAAGCACCAGAGATTCGTCAAA 351
|||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 298 CAGGGGATGACAATGTCGACAAGGTTTCACAAGGAGAAGAAGCACCCGAGATTCGTCAAA 357
Query 352 CCTTGGAGTCTTTGTCTGAAGAACTCGATCAGTTTCTCCCGACTCTTTCCCTTCACATGG 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CCTTGGAGTCTTTGTCTGAAGAACTCGATCAGTTTCTCCCGACTCTTTCCCTTCACATGG 417
Query 412 AGGAGCACAAAGATAGCACCGAGGAGAAAGGAGAGGATGGTTACTTTCAGATCCCACAGT 471
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 418 AGGAGCACAAAGATTGCACCGAGGAGAAAGGAGAGGATGGTTATTTTCAGATCCCACAGT 477
Query 472 TTGTTGGGAAATTCTTGGATCTTTTTGAGGAAAAACTCTCCAAATATGACTCTGGTGAGC 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTGTTGGGAAATTCTTGGATCTTTTTGAGGAAAAACTCTCCAAATATGACTCTGGTGAGC 537
Query 532 CTAAGACTGTGTGGTACCAAGATCCTGAAGAGGTGTCTTCGCTTTTGGAGGCAGTGGATC 591
||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||| |
Sbjct 538 CTAAGACGGTGTGGTATCAAGATCCCGAAGAGGTGTCTTCGCTTTTAGAGGCAGTGGACC 597
Query 592 GTGTCTCAAAGCTTATGGGGCTATTGCTCAACACCAAGTCCTGTTTGGACCATCATGAGT 651
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 598 GTGTCTCAAAGCTTATGGTGCTATTGCTCAACACCAAGTCTTGTTTGGACCATCATGAGT 657
Query 652 CCTTGATCAACCATGCGGGATCTATTCAGCAGCGTGCAATGGCTTTCTTGGAAGACGAAT 711
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 658 CCTTGATCAACCATGCGGGATCCATCCAGCAGCGCGCAATGGCTTTCTTGGAAGACGAAT 717
Query 712 TCCGCATCATTTTAGAAGAATCTGTGACCAAAGAGTCTGTGGTTGTCACCGATGACAGCA 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TCCGCATCATTTTAGAAGAATCTGTGACCAAAGAGTCTGTGGTTGTCACCGATGACAGCA 777
Query 772 ACAGCCAGAGGAGGAGCACTGCCGATCAGCAAGACCACCAGAACGATGTGGTGGTCTCAC 831
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 778 ACAGCCAGAGGAGGAGCACTGCCGATCAGCAAGACCACCAGAATGATGTGGTGGTCTCAC 837
Query 832 AAGACCACGACCAGATGCTCGTTCCGGAATGCGGTGATCAGGAGATTGAATA-CCCTGGT 890
|||| || ||||||||||||||||| |||||||||||||||||||| ||||| ||| |||
Sbjct 838 AAGATCAAGACCAGATGCTCGTTCCCGAATGCGGTGATCAGGAGATCGAATATCCC-GGT 896
Query 891 TACCCTGAGGATGTGGTTGTGGTGCTGAGGAAAATAGCGGAAAAGATGAAAGCAGGAGGG 950
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 897 TACCCGGAGGATGTGGTTGTGGTGCTGAGGAAAATAGCGGAGAAGATGAAAGCAGGAGGG 956
Query 951 TATGGATGGGAATGTAGAGAGGTTTATTTGGTTGGGAGGAGGAACATCTTGATGCGCACT 1010
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 957 TATGGATGGGAATGTAGAGAGGTTTATTTGGTGGGGAGGAGGAATATCTTGATGCGCACT 1016
Query 1011 TTGAAACAAGATTGTGAGTTTGAGAAAGTTAGCATCGACGAGGTGCAGAAAATGAGCTGG 1070
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1017 TTAAAACAAGATTGTGAGTTTGAGAAAGTTAGCATCGACGAAGTGCAGAAAATGAGCTGG 1076
Query 1071 GACACGCTCGAGAGAGAGATCCCTATTTGGAACAAGACTTTCAAGGACTGCTCTTCTCTC 1130
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GACACGCTTGAGAGAGAGATCCCTATTTGGAACAAGACTTTCAAGGACTGCTCTTCTCTC 1136
Query 1131 TTCTTCCCTGGTGAGCTAAAACTTGCAGAGAGGATATTCCCAGGGGACGAGGGGAACTTA 1190
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1137 TTCTTCCCTGGTGAGCTAAAACTCGCAGAGAGGATATTCCCAGGGGACGAGGGGAGCTTA 1196
Query 1191 TTCTGTATTGTCACACACGGTCTGGCCATCCAGTTCTTAGGTTTCGCAGAGGCCGTAGCC 1250
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1197 TTCTGTATTGTCACACACGGTCTGGCCATCCAGTTCTTGGGTTTCGCAGAGGCCGTGGCC 1256
Query 1251 ATGACAAGGCGCTCCACTGAAAAGCTCTTCAAGATCCTCGACATCTATGAGACTCTGCGG 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 ATGACAAGGCGCTCCACTGAAAAGCTCTTCAAGATCCTCGACATCTATGAGACTCTGCGG 1316
Query 1311 GATAGTTTTCCGGCCATGGAGGAGCTGTTTCCGGAGGAACTCCGGAGCGAGCTGAGGAAC 1370
|| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1317 GACAGTTTTCCGGCCATGGAGGAGCTGTTTCCGGAGGAGCTCCGGGGCGAGCTGAGGAAC 1376
Query 1371 GAGGTGACCAGTGCTCGCTCCCGACTTGGAGAGACTGCGATTCACATTTTCTGTGATCTG 1430
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GAGGTGACCAGTGCTCGTTCCCGACTTGGAGAGACTGCGATTCACATTTTCTGTGATCTG 1436
Query 1431 GAGCACTCCATCAAATCAGATTCAAGCAAGACCCCTGTGCCAGGAGGGGCAGTGCATCCA 1490
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1437 GAGCACTCCATCAAATCAGATTCAAGCAAGACCCCGGTGCCAGGAGGGGCGGTGCATCCG 1496
Query 1491 TTGACGAGGTACACCATGAACTACCTCAAGTACTCGTGCGAATACAAGGACACATTGGAA 1550
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1497 TTGACGAGGTACACCATGAACTACCTCAAGTACTCGTGCGAATACAAAGACACGCTGGAA 1556
Query 1551 CAAGTGTTCAAGAGTCACTCGAAGATGGAGCGAGAGGAGGAGGAACCTGTGGAGAGCGGA 1610
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1557 CAAGTGTTCAAGAGTCACTCGAAGTTGGAGCGAGAGGAGGAGGAACCTGTGGAGAGCGGA 1616
Query 1611 AACTCGGCCTTCGCAAGCCAGCTGATGAGGATAATGGAGCTACTCGACGGAAACCTGGAG 1670
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1617 AACTCGGCCTTCGCAAGCCAGCTGATGAGGATAATGGAGCTACTTGACGGGAACCTGGAG 1676
Query 1671 ACAAAGTCAAAACAGTACAAAGACATACCATTGAGCTGCATCTTCATGATGAACAACGGG 1730
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1677 ACAAAGTCAAAACAGTACAAAGACATACCACTGAGCTGCATCTTCATGATGAACAACGGG 1736
Query 1731 AGATACATAGTGCAGAAGATCAAAGGATCGGCGGAGATACACGAGGTGATGGGTGACACA 1790
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1737 AGATACATAGTGCAGAAGATCAAAGGATCAGCAGAGATACACGAGGTGATGGGTGACACA 1796
Query 1791 TGGTGCAGGAGGAGGTCGTCAGAGCTAAGGAACTATCACAAAAACTATCAGAGGGAGACG 1850
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1797 TGGTGCAGGAGGAGGTCGTCAGAGCTTAGGAACTATCACAAAAACTACCAGAGGGAGACG 1856
Query 1851 TGGGGGAAGCTACTGGGGTTCTTAGGGCACGAGGGGCTCATGCACAACGGCAAGATAGTC 1910
||||||||||| ||||| ||||||||||||||||| |||||||| || |||||||||||
Sbjct 1857 TGGGGGAAGCTGCTGGGTTTCTTAGGGCACGAGGGACTCATGCATAATGGCAAGATAGTA 1916
Query 1911 AAGCCCAATCTCAAGGAGAGGTTCAAGAGCTTCAACGCAACATTTGACGAGATACACAAG 1970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 AAGCCCAATCTCAAGGAGAGGTTCAAGAGCTTCAACGCAACATTTGACGAGATACACAAG 1976
Query 1971 ACACAGACCACATGGGTAGTCAACGACGAGCAGCTGCAGAGTGAGCTAAGGGTCTCCATA 2030
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1977 ACACAGACCACGTGGGTAGTCAACGACGAGCAGCTGCAGAGTGAACTAAGGGTCTCCATA 2036
Query 2031 ACTGCAGTCATGATACCTGCCTACAGGGCCTTCATGGCCAGGTTTGGACAGTACTTGGAT 2090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 ACTGCAGTCATGATACCTGCCTACAGGGCCTTCATGGCCAGGTTTGGACAGTACTTGGAT 2096
Query 2091 CCTGGTCGCCAGACCGAGAAGTATGTCAAGTATCAGCCTGAAGATATCGAGGATCTCATC 2150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 CCTGGTCGCCAGACCGAGAAGTATGTCAAGTATCAGCCTGAAGATATCGAGGATCTCATC 2156
Query 2151 GACCAGCTCTTTGAAGGCAACACCTCCTCCTCTTCTACTGCCACCGCCAGGCGAAGAACA 2210
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2157 GACCAGCTCTTTGAAGGCAACACCTCCTCCTCTTCCACTGCCACCGCCAGGCGAAGAACA 2216
Query 2211 TAGcttctttcttttcttcttttttcttttgcaacaacactttttcctgattttctcaaa 2270
|||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||
Sbjct 2217 TAGCTTCTTTCTTTTCTTCTTTTTTCTTTTGCTATAACACTTTTTCCTGATTTCCTCAAT 2276
Query 2271 atttttcatgtcttcttcaaCTGTTTTTGTCTGAA-TGCCACAACTTGGATGACCC 2325
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2277 TTTTTTCATGTCTTCTTCAACTGTTTTTGTCTGAAATGCCACAACTTGGATGACCC 2332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87569473255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5