BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14000.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325871 jgi|Araly1|325871|fgenesh1_pm.C_scaffold_6001091 1003 0.0
> Ahg325871 jgi|Araly1|325871|fgenesh1_pm.C_scaffold_6001091
Length=621
Score = 1003 bits (543), Expect = 0.0
Identities = 595/621 (96%), Gaps = 0/621 (0%)
Strand=Plus/Plus
Query 170 ATGGAGGTGGAGAAGAGGATTGTAGTGAATGGAGGAATGAAATTGCCAATAGGATACAGA 229
|||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAGGTGGAGAAGAGGATAGTAGTGAGTGGAGGCATGAAATTGCCAATAGGATACAGA 60
Query 230 TTTCACCCAACCGAGCAAGAGCTTATCCTTCATTACTTGCTCCCAAAGGCCTTTGCTTCT 289
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTCACCCAACGGAGCAAGAGCTTATCCTTCATTACTTGCTCCCAAAGGCCTTTGCTTCT 120
Query 290 CCTTTGCCTTCCTCCATCATCCCTGTCTTTGACCTCTTCTTCTCTCATCCTCTTAGTTTC 349
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 121 CCTTTGCCTTCCTCCATCATCCCTGTCGTTGACCTCTTCTTCTCTCATCCTCTTACTTTC 180
Query 350 CCAGGGGACCAAAAGGAGAAGCAGAGGTACTTCTTTTGCAAGAAGAGAGAAGTGTCAAGT 409
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCAGGGGACCAAAAAGAGAAGCAGAGGTACTTCTTTTGCAAGAAGAGAGAAGTGTCAAGT 240
Query 410 AATGAGCATAGAATCAAGATTTCCTCTGGTGATGGTTATTGGAAACCTATTGGTAAAGAG 469
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 241 AATGAGCATAGAATCAAGATTTCATCTGGTGATGGTTATTGGAAACCTATTGGGAAAGAG 300
Query 470 AGACCAATCATTGCCTGTGGTAAAACATTTGGGATTAGAAGAACACTTGCTTTCTATGAA 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGACCAATCATTGCCTGTGGTAAAACATTTGGGATTAGAAGAACACTTGCTTTCTATGAA 360
Query 530 ACAAACAAGTCTTCTTCTTATTGCAACAAAACTAGATGGAGCATGACAGAGTATTGTCTT 589
|||||||||||||||||| ||||||||||||| | |||||||||||||||||| || |||
Sbjct 361 ACAAACAAGTCTTCTTCTAATTGCAACAAAACCAAATGGAGCATGACAGAGTACTGCCTT 420
Query 590 GCGGGATTTGCGTCGGCTAAGGTGTCTGGAGAATGGGCAGTGTACAATGTTTATGAGAGG 649
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GCGGGATTTGCATCGGCTAAGGTGTTTGGAGAATGGGCAGTGTACAATGTTTATGAGAGA 480
Query 650 AAAGGCTCAAAAGGAAGAAAACAGAGGAAATCAAGAGAGGGAGATGATGAAGAATTGAGA 709
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAAGGATCAAAAGGAAGAAAACAGAGGAAATCAAGAGAGGGAGATGATGAAGAATTGAGT 540
Query 710 TGCATCGACCATTTTACGGTTGGGTCAAATCATGAAACCGGTCCACCACCGCCTTCTCCT 769
||| || ||||||||| ||||||||| |||||||||||||||| |||||||||||||||
Sbjct 541 TGCGTCCACCATTTTATGGTTGGGTCCGATCATGAAACCGGTCCGCCACCGCCTTCTCCT 600
Query 770 CCTACCTCAGCTGATGAGTAA 790
||||||||| |||||||||||
Sbjct 601 CCTACCTCACCTGATGAGTAA 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5