BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14010.1
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488229 jgi|Araly1|488229|fgenesh2_kg.6__1363__AT5G14010.1 950 0.0
> Ahg488229 jgi|Araly1|488229|fgenesh2_kg.6__1363__AT5G14010.1
Length=758
Score = 950 bits (514), Expect = 0.0
Identities = 707/791 (89%), Gaps = 50/791 (6%)
Strand=Plus/Plus
Query 11 CACACATCCTTCActcttctctctctctctctcgct--ttttatttgcttttactctcat 68
||||||||||||||||||||||||||||||||| || ||| ||| |||||||||||||
Sbjct 3 CACACATCCTTCACTCTTCTCTCTCTCTCTCTCTCTCGCTTT-TTTACTTTTACTCTCAT 61
Query 69 cttctctatctctcttcctctGTAGCTTAAGAACCTCTCAAAAATGGCGGAACCACCACC 128
|||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 62 CTTCTCTATCTCTCTT-CTCTGTAGCTTAAAAAGCTCTCAAAAATGGCGGAACCACCACC 120
Query 129 GTCTTACCTTCATTTCGTAG-GTCCTGCAAAAACTCGATCATCAAGCAAACGCCACTCTT 187
|||||||| ||||||||| | ||||||||||| |||||||||| |||||||| |||||||
Sbjct 121 GTCTTACCATCATTTCGT-GAGTCCTGCAAAACCTCGATCATCGAGCAAACGTCACTCTT 179
Query 188 TCTCCTCCTCTGCACATCCAG-CTTCCCACCGTCTCTTTCCATGTCAGTACTGTCCTCGA 246
||||||| ||| ||||||| | |||||||||||||||| || |||||||||||||| ||
Sbjct 180 TCTCCTCTTCTTCACATCC-GACTTCCCACCGTCTCTTCCCGTGTCAGTACTGTCCCCGC 238
Query 247 AAGTTCTACACATCTCAAGCTCTCGGCGGTCACCAAAACGCTCACAAACGCGAACGCGCC 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AAGTTCTACACATCTCAAGCTCTCGGCGGTCACCAAAACGCTCACAAACGCGAACGCGCC 298
Query 307 GCTGCTCGTCGTAACCTCGGCGTCCTCGCTAACTCTCCACCCATCCTCGACGACAACAAC 366
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 299 GCTGCTCGTCGTAACCTCGGCGTCCTTGCTAACTCTCCACCCATCCTCGACGACAACA-C 357
Query 367 ACGTTTCTTCGTCCTTACCCTTGCTTTTACCAAAACCCATTTCAAGGATCTACTTCTGGA 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 --GTTTCTTCGTCCTTACCCTTGCTTTTACCAAAACCCATTTCAAGGATCTACTTCTGGA 415
Query 427 AACGAACCGCTTCAGGAACAGCCGACGATGATGACGATGGATGGCTACGATCCGTTTCAT 486
| ||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||||| ||
Sbjct 416 AGCGAACCGGTTCAGGAGCAGACGACGATGATGACGATGGGTGGGTACGATCCGTTTAAT 475
Query 487 CCGTATCCGTATGTGTACCCTTTTGCATTATCCGGTAACAACAACGACGGAGGAAACGGC 546
|||| ||||||||||||||| |||| | |||||||||||||| ||||| || ||||
Sbjct 476 CCGTTTCCGTATGTGTACCCGTTTGGACTATCCGGTAACAAC---GACGGC--AA-CGGC 529
Query 547 GTTATGGAAGAAGACGAGCCTCTCGATCTAGACCTTTCTCTCCGTTTATAAGTTATCTCT 606
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 530 GTCATGGAAGAAGACGAGCCTCTCGATCTCGACCTTTCTCTCCGTTTATAAGTTATCTCT 589
Query 607 GCTTTCTT---CTCT--GTTTTGTTTTTT--GTTCAGATGACTCT---TTT-AAGTACAA 655
||||| || |||| |||||||||||| |||||||||||||| ||| ||||||||
Sbjct 590 GCTTTTTTTTTCTCTCTGTTTTGTTTTTTTTGTTCAGATGACTCTAGCTTTTAAGTACAA 649
Query 656 CTTTGGAGCTATATATGTACTAGAGTTCCATGTCCTGCTTTTGATTTCCTTGAAAGATAA 715
|||||||||| | | ||| |||||||| |||||||||||||||| ||
Sbjct 650 CTTTGGAGCT-T-T--GTAGTAGAGTTC-ATGTCCTGCTTTTGAT-------AA------ 691
Query 716 ACTAGCTGCTACCTTTTTTGGATATTACTTATGACGATGATGATGATCGTTTCGATTTTA 775
|||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 692 -CTAGCTGCTACCTTTTTTGGATATTACTTATGACGACGATGAT---CGTTTCGGTTTTA 747
Query 776 AGTTTCTGATG 786
|||||||||||
Sbjct 748 AGTTTCTGATG 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29049662754
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5