BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14020.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488230 jgi|Araly1|488230|fgenesh2_kg.6__1364__AT5G14020.1 2102 0.0
> Ahg488230 jgi|Araly1|488230|fgenesh2_kg.6__1364__AT5G14020.1
Length=1392
Score = 2102 bits (1138), Expect = 0.0
Identities = 1331/1419 (94%), Gaps = 34/1419 (2%)
Strand=Plus/Plus
Query 18 agagagagagagagagagaaagagagCATGGGGTGTGCTCA-ATCTACTATTGCTGTTGT 76
||||||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||
Sbjct 1 AGAGAGAGAGAGAGAGAGAGAGAGAGCATGGGGTGTGCT-ACATCTACTAATGCTGTTGT 59
Query 77 GGGAAGGAAGAACAAGAAGAGGATCATTCAAGAATCTGTAGTGTTTGTTCTACAGTTCCG 136
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 60 GGGAAGGAAGAACAAGAAGAGGATCATTCAAGAATCTGTAGTTTTTGTTCTGCAGTTCCG 119
Query 137 TGTTCCTGTTCAGTCTGATCTTCAGCGCCAACTCAAAGGTGTTTCTCCCAAGACAACCAT 196
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 120 TGTTCCTGTTCAGTCTGATCTTCAGCGCCAACTCAAAGGCGTTGCTCCCAAGACAACCAT 179
Query 197 CAATCGGTTGACATGTTTAAGAAATCAGATTGAGTTGGTAGCTGAGGACACAGGGGGTTC 256
|||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGATCGGTTGTCATGTCTAAGGAATCAGATTGAGTTGGTAGCTGAGGACACAGGGGGTTC 239
Query 257 AGCCATCTCTGAGTTGCGTACAGCTTTGGAGGAGTACTTGTCACTTCTATCCGGTCTTAT 316
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 240 TGCCATCTCTGAGTTGCGTACAGCTTTGGAGGAGTACTTGTGTCTTCTAACCGGTCTTAT 299
Query 317 CAAGAAAAG-T---A-AA-GATGGAATGGAGGGCTGCGTAGAGCTCAAATGGAGGACCCT 370
|||||| || | | || ||||||| |||||||||||| ||| ||||||||||||||||
Sbjct 300 CAAGAACAGTTCGGAGAATGATGGAACGGAGGGCTGCGTGGAGTTCAAATGGAGGACCCT 359
Query 371 TGGCGATGGTCGACGAGCAGAGATATGTTGCACAAACCTTTGGATGGAGATGTTGATAGT 430
||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGGAGATGGTCCACGAGAAGAGATATGTTGCACAAACCTTTGGATGGAGATGTTGATAGT 419
Query 431 GATCCACATGATGGCTGCTTTGGCATTGACTGAAGCTAACTCTCTCATGATTCCAAAGGA 490
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 GATCCACATGATGGCTGCTTTGGCATTGACTGAAGCTAACTCTCTCATGATTCCAAAGAA 479
Query 491 TTGCTATGCTTCTGGTTCTGGCAATGGCGTCCGTGTGGTCTCCACTGATTGCAGGAGAGA 550
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 TTGCTATGCTTCTGGTTCTGGCAATGGCGTCCGTGTGGTCTCGACTGATTGCAGGAGAGA 539
Query 551 TGCGGTTGACTTGCTGCTCAAGGCATCTGGATACTTGGAGTTCTGCGTCCGAGAGATTCT 610
|||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct 540 TGCGGTTGACTTGCTGCTCAAGGCGTCAGGATACTTGGAGTTCTGCGACCGAGAGATTCT 599
Query 611 GACTCAACTTCCTCATGATATAAAGAGTAAGTTGCCAGATGATATGCAGGAAAGTGTATT 670
|||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 600 GACTCAACTTCCTCCTGATATAAAGAATAAACTGCCAGATGATATGCAGGAAAGTGTATT 659
Query 671 ACAAACTCTCTCTATACAAGCACTAGGCCAGGGAACTGAGATTCAACTTGGATTAGCAGT 730
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 ACAAACTCTCTCTATCCAAGCACTTGGCCAGGGAACTGAGATTCAACTTGGATTAGCAGT 719
Query 731 TGATAGTCAGAAAGCAACATTGTCTGTGAAGAGGAGAATTGCATGTGAGCAAGTCATCTA 790
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGATAGCCAGAAAGCAACATTGTCTGTGAAGAGGAGAATTGCATGTGAGCAAGTCATCTA 779
Query 791 CTTCACTCAGGCATATCACTGCTTGTCTAGTTGTGAAGCAGTTAGCCATGGATGCGCCAA 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTTCACTCAGGCATATCACTGCTTGTCTAGTTGTGAAGCAGTTAGCCATGGATGCGCCAA 839
Query 851 GAAACTTCTCCGGTTTATCTACTGGAAGTTTCTGGAAGCAAAGGCTGCAGCATACTACTA 910
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAAGCTTCTCCGGTTTATCTACTGGAAGTTTCTGGAAGCAAAGGCTGCAGCATACTACTA 899
Query 911 CCATGGACTGGTAACAGACAAGGGAAGTGAGCCGGCTTGTCACTTGAGCGCTGTGTGTTG 970
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 900 CCATGGACTGGTAACAGACAAGGGAAGTGAGCCGGCTTGTCACGTGAGCGCGGTGTGTTG 959
Query 971 TTTCCTTGCAGCTGCAGAGATCCTAGGAGAAAGCAAAAAAGCCTGTCTTAGCTTCTGCTT 1030
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 960 TTTCCTTGCAGCTGCAGAGATCCTAGGAGAAAGCAAGAAGGCCTGTCTTAGCTTCTGCTT 1019
Query 1031 AGCTCCTCCTGTCACAAGGGCTCCTCCTATGTGGGGTGTTATGAAGCATTTGAGCCAGAA 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGCTCCTCCTGTCACAAGGGCTCCTCCTATGTGGGGTGTTATGAAGCATTTGAGCCAGAA 1079
Query 1091 GATTCCAGAAGTTGCTTTTAGAAAGTCGCAGACATATGGATACTTGCTTGAAGAAGAAGA 1150
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1080 GATTCCAGAAGTTGCTTTTAGAAAGTCTCAGACGTATGGATACTTGCTTGAAGAAGAAGA 1139
Query 1151 AAAGGCAATGCAGTGTTTGCCAGAGCTTCCAGACTTTCAGTTGTCATTGAGACCCGACGA 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1140 GAAGGCAATGCAGTGTTTGCCAGAGCTTCCAGACTTTCAGTTGTCATTGAGACCAGACGA 1199
Query 1211 CTTTGAACTGCCTGAAATAGAGGATGTCTCTTCCTCATGAAACCAAACCCATTTGCTTAG 1270
||||||||||||||||| |||||||||||| || ||||||| || || |||||||||||
Sbjct 1200 TTTTGAACTGCCTGAAATGGAGGATGTCTCTCCCGCATGAAATCAGACTCATTTGCTTAG 1259
Query 1271 AGAACATCTTGAGTTCTTGACTACTAGCTACTCATGTTGATGATGATGACCTTGATCGTT 1330
|||||||||||| | || | | | | | || || |||||||||||
Sbjct 1260 AGAACATCTTGA-T----GA-T----G--A-T-A-GT-GA---------CCTTGATCGTT 1294
Query 1331 GAGAAAGAAGCACTCTCTCTACACATATTCTTTGGGTATTTTACCACTTATAATTGTAAT 1390
||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1295 GAGCAAGAAGCAA-CTCTCTACACATATTCTTTGAGTATTTTACCACTTATAATTGTAAT 1353
Query 1391 GTAATATTTTGTATTCTTGTCAGACAAAATCTGATACTT 1429
|||||||||||||||||| ||||||||||||||||||||
Sbjct 1354 GTAATATTTTGTATTCTTCTCAGACAAAATCTGATACTT 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5