BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14030.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940872 jgi|Araly1|940872|scaffold_601416.1 968 0.0
> Ahg940872 jgi|Araly1|940872|scaffold_601416.1
Length=631
Score = 968 bits (524), Expect = 0.0
Identities = 596/630 (95%), Gaps = 7/630 (1%)
Strand=Plus/Plus
Query 77 CGTCGTAGATCGCAAACCATGGCCGTCGCTG-TAGCTAAGCTTCTGATCTCCGCCATGGC 135
||||| ||||| |||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct 6 CGTCGGAGATCACAAACCATGGCCATCGC-GTTAGCTAAGCTTCTGATCTCCGCCATGGT 64
Query 136 GGTTTTCATGCTTGTTTCTGCTTCGTTCGCGACCTCGGAAGTGCCGTTCATGGTGGTTCA 195
||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 65 GGTATTCATGCTTGTTTCTGCTTCGTTTGCGACCTCGGAAGTTCCGTTCATGGTGGTTCA 124
Query 196 CAAGAAAGCCACTCTCAACAGGCTCAAATCTGGCGCCGAACGCGTCTCCGTTTCCTACGA 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 CAAGAAAGCCACTCTCAACAGGCTCAAATCTGGCGCCGAACGCGTCTCCGTTTCCTACGA 184
Query 256 CATCTATAACCAAGGATCCTCGTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGA 315
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 185 CATCTATAACCAAGGATCCTCGACGGCGTATGATGTGACTCTGACAGATAATAGCTGGGA 244
Query 316 TAAAAAGACTTTTGAAGTTGTTAATGGAAACACTTCAAAATCATGGGAAAGACTTGATGC 375
|||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 245 TAAAGCTACTTTTGAGGTTGTTAATGGAAACACTTCGAAATCATGGGAAAGGCTTGATGC 304
Query 376 AGGAGGTATTCT-GTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACG 434
||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 305 AGGAGGTAT-CTTGTCTCATTCTTTCGAACTGGAGGCCAAGGTTAAAGGAGTCTTCTACG 363
Query 435 GTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGGAAGCATACT 494
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 364 GTGCCCCTGCTGTCGTTACTTTCCGTATCCCCACAAAGCCAGCTCTTCAGGAAGCGTACT 423
Query 495 CAACTCCACTACTACCTCTAGATATCCTCGCAGACAAACCTCCAACGAAACCTTTGGACG 554
| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
Sbjct 424 CGACTCCACTACTACCTCTAGACATCCTCGCAGACAAACCTCCAACGAAAATTTTGGATG 483
Query 555 TGGCCAAGAGGTTGCTGGCGAAATATGGATCACTCGTCTCCGTGATCTCCATGGTGGTTT 614
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TGGCCAAGAGGTTGCTGGCAAAATATGGATCACTCGTCTCCGTGATCTCCATGGTGGTTT 543
Query 615 -GTTTCATATACTTGGTGGCAACACCTAAGTCCAACGTATCAAAGGCAAGCAGCAAGAAG 673
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 544 TGTT-CATATACTTGGTGGCAACACCTAAGTCCAACGTATCAAAGACAAGCAGCAAGAAG 602
Query 674 AAGCGTTAAGTTAGTGAAATGAAAGGTGAG 703
||||||||||||||||||||||| ||||||
Sbjct 603 AAGCGTTAAGTTAGTGAAATGAA-GGTGAG 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5