BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14040.1
Length=1649
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940873 jgi|Araly1|940873|scaffold_601417.1 1901 0.0
Ahg343089 jgi|Araly1|343089|fgenesh1_pg.C_scaffold_3002852 134 3e-30
> Ahg940873 jgi|Araly1|940873|scaffold_601417.1
Length=1165
Score = 1901 bits (1029), Expect = 0.0
Identities = 1126/1171 (96%), Gaps = 13/1171 (1%)
Strand=Plus/Plus
Query 87 TCCTTCCTCCGCCGCCGCCATGGAATCTCCGAAGAATTCTCTGATCCCGAGCTTCCTCTA 146
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TCCTCCCTCCGCCGCCGCGATGGAATCTCCGAAGAATTCTCTGATCCCGAGCTTCCTCTA 61
Query 147 TTCATCATCTTCATCTCCGAGATCTTTCCTCCTCGACCAGGTGCTCAATTCCAACTCCAA 206
||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 62 TTCATCATCTTCATCCCCGAGATCCTTCCTCCTCGACCAGGTGCTGAATTCCAACTCCAA 121
Query 207 CGCTGCATTCGAGAAAT-CTCC-TTCTCCG-GCCCCGCGTTCC-TCTCCTACGTCGATGA 262
|||||||||| | | |||| ||| || | | ||| ||||| ||||||||||
Sbjct 122 CGCTGCATTC--G-CCTCCTCCAATCT-CGAG-AAATC--TCCTTCTCCGACGTCGATGA 174
Query 263 TTTCTCGGAAGAATTTCCTTATTGCATCTCCCACCGAGCCAGGGAAGGGGATCGAGATGT 322
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 175 TTTCTCGGAAGAATTTCCTTATTGCGTCTCCCACCGAGCCAGGGAAGGGGATCGAGATGT 234
Query 323 ATTCACCTGCCTTCTACGCTGCTTGTACCTTTGGTGGAATTCTCAGCTGTGGTCTTACTC 382
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 235 ATTCACCTGCCTTCTACGCTGCTTGTACCTTCGGTGGAATTCTCAGCTGTGGTCTCACTC 294
Query 383 ACATGACCGTGACTCCTCTCGATCTCGTCAAGTGCAATATGCAGATTGATCCAGCGAAGT 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ACATGACCGTGACTCCTCTCGATCTCGTCAAGTGCAATATGCAGATTGATCCAGCGAAGT 354
Query 443 ACAAGAGCATCTCGTCTGGTTTTGGAATTTTGCTGAAAGAGCAAGGAGTCAAAGGCTTTT 502
|||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 355 ACAAGAGCATTTCTTCTGGTTTTGGAATTTTGCTGAAAGAGCAAGGTGTCAAAGGCTTTT 414
Query 503 TCCGTGGATGGGTTCCTACTCTTTTGGGTTACAGTGCTCAGGGTGCCTGCAAGTTTGGAT 562
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 415 TCCGTGGATGGGTTCCTACTCTGTTGGGTTACAGTGCTCAGGGTGCCTGCAAGTTTGGAT 474
Query 563 TCTACGAGTACTTTAAGAAGACTTACTCTGACCTTGCTGGACCTGAGTACACTGCCAAAT 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TCTACGAGTACTTTAAGAAGACTTACTCTGACCTTGCTGGACCTGAGTACACTGCCAAAT 534
Query 623 ACAAGACTCTCATCTACCTTGCTGGTTCTGCTTCTGCTGAGATCATTGCCGATATTGCAC 682
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 535 ACAAAACTCTCATCTACCTTGCTGGTTCTGCTTCTGCTGAGGTCATTGCCGATATTGCAC 594
Query 683 TTTGCCCATTTGAAGCTGTGAAGGTTCGTGTTCAGACACAGCCTGGATTTGCTAGGGGGA 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TTTGCCCATTTGAAGCTGTGAAGGTTCGTGTTCAGACACAGCCTGGATTTGCTAGGGGGA 654
Query 743 TGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGGCTTGTATAAGGGTC 802
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 655 TGTCTGATGGATTTCCCAAGTTTATCAAGTCTGAAGGATACGGAGGCTTGTATAAGGGTC 714
Query 803 TTGCTCCACTCTGGGGACGTCAGATTCCTTACACTATGATGAAGTTTGCTTCCTTTGAGA 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TTGCTCCACTCTGGGGACGTCAGATTCCTTACACTATGATGAAGTTTGCTTCCTTTGAGA 774
Query 863 CCATTGTTGAGATGATTTACAAGTACGCAATCCCCAACCCAAAGAGTGAGTGCAGCAAAG 922
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 775 CCATTGTTGAGATGATCTACAAGTACGCAATCCCCAACCCGAAGAGTGAGTGCAGCAAAG 834
Query 923 GTCTGCAACTCGGAGTGAGTTTTGCCGGAGGTTACGTTGCCGGAGTGTTCTGTGCCATCG 982
|||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 835 GTCTACAACTCGGGGTGAGTTTTGCAGGAGGTTACGTTGCCGGAGTGTTCTGTGCAATCG 894
Query 983 TTTCTCATCCAGCAGACAATCTAGTGTCATTCCTCAACAACGCTAAGGGAGCAACCGTTG 1042
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 895 TTTCTCATCCAGCAGACAATCTGGTGTCATTCCTCAACAACGCTAAGGGAGCAACCGTTG 954
Query 1043 GAGATGCGGTGAAGAAGATTGGTATGGTGGGACTGTTCACAAGAGGGCTTCCTCTTAGAA 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 955 GAGATGCGGTGAAGAAGATTGGTATGGTGGGACTGTTCACAAGAGGGCTTCCTCTAAGAA 1014
Query 1103 TTGTGATGATCGGGACGTTGACTGGAGCACAGTGGGGATTATACGATGCCTTCAAAGTGT 1162
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TTGTGATGATCGGGACATTGACTGGAGCACAGTGGGGATTATACGATGCCTTCAAAGTGT 1074
Query 1163 TTGTTGGCCTGCCAACCACTGGTGGTGTTGCTCCAGCTCCTGCCATCGCAGCTACTGAAG 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TTGTTGGCCTGCCAACCACTGGTGGTGTTGCTCCAGCTCCTGCCATCGCAGCTACTGAAG 1134
Query 1223 CCAAAGCCTAAACAATGACGAAAAAGG-TTA 1252
||||||||||| ||||||||||||||| |||
Sbjct 1135 CCAAAGCCTAA-CAATGACGAAAAAGGGTTA 1164
> Ahg343089 jgi|Araly1|343089|fgenesh1_pg.C_scaffold_3002852
Length=2835
Score = 134 bits (72), Expect = 3e-30
Identities = 102/116 (88%), Gaps = 3/116 (3%)
Strand=Plus/Plus
Query 718 ACACAGCCTGGATTTGCTAGGGGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAA 777
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 2395 ACACAGCCTGGATTTGCCAGGGGAATGTCTGATGGATTTCCCAAGTTTATCAAGTCTGAA 2454
Query 778 GGA-TACGGAGGCTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT 832
|| | ||||| ||||| ||||| ||| |||||| ||||| |||||||||||||
Sbjct 2455 GGTCTT-GGAGGTTTGTACAAGGGAATTGGTCCACTTTGGGG-CGTCAGATTCCTT 2508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61820467635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5