BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14050.1
Length=1899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488236 jgi|Araly1|488236|fgenesh2_kg.6__1370__AT5G14050.1 2856 0.0
> Ahg488236 jgi|Araly1|488236|fgenesh2_kg.6__1370__AT5G14050.1
Length=1848
Score = 2856 bits (1546), Expect = 0.0
Identities = 1790/1898 (94%), Gaps = 56/1898 (3%)
Strand=Plus/Plus
Query 8 TTTTGTTGGAAAATGAAATTCTAAAACCCTAAAAAATCCAACCAGAAGGGTAGAAGCTCT 67
|||| ||||||||||||||| |||||||||||||||||||||||||| | | |||||||
Sbjct 1 TTTTTTTGGAAAATGAAATTGTAAAACCCTAAAAAATCCAACCAGAA--G-AAAAGCTCT 57
Query 68 CTCGCCGACAATTACCGGCTACAAGGTTTCTCTGCTCGTCAACGTTCTCTGAATTAGTGG 127
|| || || ||||||||||||||||||||||||||||| |||| ||| ||||
Sbjct 58 CT---CG-------CC-GCTACAAGGTTTCTCTGCTCGTCAACGTTTTCTGGATTTGTGG 106
Query 128 TATTGAAAGATGAGCTTATCTCAGAATGCTCCGAAAAGTAAGGGTATTAAAAGAGAGGAG 187
|||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 107 TATTGAAAGATGAGCTTATCTCAGAATGCTCCGACAAGTAAGGCTAATAAAAGAGAGGAG 166
Query 188 CTCAAGAAACAGTACGAAGATGTTGAAGATGAGGAAGAGATTGGGTCCGATGATGATCTC 247
||||||||||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 167 CTCAAGAAACAGTAC----A-----CAGATGGGGAAGAGATTGGGTCCGATGATGATCTC 217
Query 248 ACTAGGGgaaagagaagaaagacagagaaggagaagcagaagctagaagaaTCGGAACTG 307
|||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| ||
Sbjct 218 ACTAGGGGAAAGAGAAGAAAGACAGATAAGGAGAAGGAGAAGCTACAAGAATCGGAGGTG 277
Query 308 GTTGAAATGAAAAAGCTTGAGAATTTGATATTCGGGTCACTCTACTCTCCTGTTACGTTT 367
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 278 GTTGAAATGAAAAAGCTTGAGAATTTGATATTCGGGTCACTCTACTCACCTGTTACGTTT 337
Query 368 GGTAAGGAAGAAGAAGAAGATGGTTCGGCTTTGTTTCATGTAGACCGTTCTGCTGTGAGG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 GGTAAGGAAGAAGAAGAAGATGGTTCGGCTTTGTTTCATGTAGACCGTTCTGCTGTGAGG 397
Query 428 CAGATTCCTGACTACGAGGATGATGGTGATGATGATGAAGAGCTTTCTGATGAAGAGAAT 487
|||||||| || ||| || | |||||| || |||||||||||||
Sbjct 398 CAGATTCCGGATTAC------GA----G--GATGAT---GA------TGATGAAGAGAAT 436
Query 488 GGTCAAGTTGTGGCAATTAGAAAGGGAGAAGCTGCCTGGGAGGATGAAGAAGAGAAACAG 547
||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 437 GGTCAAGCTGTGGGAATTAGAAAGGGAGAAGCCGCCTGGGAGGATGAAGAAGAGAAACAG 496
Query 548 ATAAACGTTGATATAGCTAGTGTCAACCGTCTAAGGAAGCTAAGGAAAGAGGAGAATGAG 607
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 497 ATAAACATTGATATAGCTAGTGTCAACCGTCTGAGGAAGCTAAGGAAAGAGGAGAATGAG 556
Query 608 GGTTTGATCTCTGGGTCTGAGTACATTGCAAGGCTGAGGGCTCATCATGCTAAGCTAAAC 667
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GGCTTGATCTCTGGGTCTGAGTACATTGCAAGGCTGAGGGCTCATCATGCTAAGCTAAAC 616
Query 668 CCGGGGACTGATTGGGCTCGGCCAGATTCTCAAAT-AGTTGATGGAGAGTCTTCAGATGA 726
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 617 CCGGGGACTGATTGGGCTCGGCCAGATTCTCAAATCA-TTGATGGAGAGTCTTCAGATGA 675
Query 727 TGATGATACTCAGGATGGAGGAGTTGATGATATCCTTCGAACGAATGAAGATCTTGTGGT 786
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 676 TGATGATACCCAGGATGGAGGAGTTGATGATATCCTCCGGACGAATGAAGATCTTGTGGT 735
Query 787 GAAGTCTCGTGGTAACAAGCTGTGTGCTGGTCGTCTTGAATACTCTAAGCTTGTGGATGC 846
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 736 GAAGTCCCGTGGTAACAAGCTGTGTGCTGGTCGTCTTGAATACTCAAAGCTTGTGGATGC 795
Query 847 CAATGCAGCGGATCCTTCAAATGGTCCAATAAACTCTGTCCACTTCCATCAGAACGCTCA 906
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 796 CAATGCAGCGGATCCTTCAAATGGCCCGATAAACTCTGTCCACTTCCATCAGAACGCTCA 855
Query 907 GCTGCTTCTCACTGCTGGATTGGATCGACGGTTAAGGTTTTTCCAGATTGATGGAAAGAG 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GCTGCTTCTCACTGCTGGATTGGATCGACGGTTAAGGTTTTTCCAGATTGATGGAAAGAG 915
Query 967 GAACACCAAGATCCAGAGCATTTTTCTTGAGGACTGTCCCATTCGTAAAGCGGCTTTCTT 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 GAACACCAAGATCCAGAGCATTTTTCTTGAGGACTGTCCCATTCGTAAAGCGGCTTTCTT 975
Query 1027 GCCCAATGGCTCTCAGGTCATTGTCTCCGGAAGAAGAAAGTTCTTTTACAGCTTTGATTT 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GCCCAATGGCTCTCAGGTCATTGTCTCCGGAAGAAGAAAGTTCTTTTACAGCTTTGATTT 1035
Query 1087 GGAGAAGGCAAAGTTTGACAAAATTGGCCCTTTGGTTGGTAGAGAGGAGAAAAGCTTGGA 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 GGAGAAGGCAAAGTTTGACAAAATTGGCCCTTTGGTTGGTAGAGAGGAGAAAAGCTTGGA 1095
Query 1147 ATA-TTTCGAGGTGTCACAAGACTCTAACACCATAGCTTTTGTTGGCAACGAAGGTTATA 1205
| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 ACAGTTT-GAGGTGTCACAAGACTCTAACACCATAGCTTTTGTTGGCAACGAAGGTTATA 1154
Query 1206 TCTTACTTGTGTCTACAAAAACAAAAGAGCTGATAGGAACCCTAAAGATGAATGGTTCAG 1265
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1155 TCTTACTTGTGTCTACAAAAACAAAAGAGCTGATAGGAACCCTAAAGATGAACGGTTCAG 1214
Query 1266 TTAGGTCTTTAGCATTTAGTGA-AGATGGGAAGCATTTGCTGAGCTCAGGAGGTGACGGG 1324
||||||| |||||||||||||| | |||| |||||||||||||||||||||||||| |||
Sbjct 1215 TTAGGTCCTTAGCATTTAGTGATA-ATGGAAAGCATTTGCTGAGCTCAGGAGGTGATGGG 1273
Query 1325 CAAGTCTATGTCTGGGATCTGAGAACAATGAAATGCTTATACAAAGGCGTGGATGAAGGC 1384
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 CAAGTCTACGTCTGGGATCTGAGAACAATGAAATGCTTATACAAAGGCGTGGATGAAGGC 1333
Query 1385 AGCACTTGTGGCACTTCTCTTTGCAGTTCGCTTAACGGAGCATTGTTTGCTTCTGGAACC 1444
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1334 AGCACTTGTGGCACTTCTCTTTGCAGTTCGCTAAACGGAGCATTGTTTGCCTCTGGAACC 1393
Query 1445 GACAGAGGAATCGTAAACATTTACAAGAAATCTGAGTTTGTGGGAGGCAAAAGAAAGCCG 1504
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1394 GATAGAGGAATCGTAAACATTTACAAGAAATCTGAGTTTGTGGGAGGCAAGAGAAAGCCG 1453
Query 1505 ATAAAGACAGTGGACAATCTCACATCCAAGATAGATTTCATGAAGTTCAACCATGATGCT 1564
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1454 ATAAAGACAGTGGACAATCTCACTTCCAAGATAGATTTCATGAAGTTCAACCATGATGCT 1513
Query 1565 CAGATTCTAGCTATAGTCTCTACAATGAACAAAAACAGTGTAAAGCTAGTCCATGTTCCA 1624
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1514 CAGATTCTAGCTATAGTCTCTACAATGAACAAAAACAGCGTAAAGCTAGTCCATGTTCCA 1573
Query 1625 TCCCTAACCGTCTTCTCAAACTGGCCGCCACCAAACAGCACAATGCATTACCCTCGCTGC 1684
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1574 TCCCTAACCGTCTTCTCAAACTGGCCGCCACCCAACAGCACAATGCATTACCCTCGCTGC 1633
Query 1685 CTAGACTTCAGCCCCGGAAGTGGCTTCATGGCTATGGGGAACGCTGCCGGAAAAGTTTTG 1744
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1634 CTAGACTTCAGCCCCGGAAGTGGCTTCATGGCTATGGGAAACGCCGCCGGAAAAGTTTTG 1693
Query 1745 CTGTATAAACTCCATCATTACCAGAATGCTTGAAGTGGTCTTTAACAAGGGCAGTTTTGG 1804
||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1694 CTGTATAAACTGCATCATTACCAGAATGCTTGAAGTGGTCTT-AGCAAGGGCAGTTTTGG 1752
Query 1805 GATTGTTGTGTTTCCTC-ttt-ttttGTCGCAAGTACT-CTTTATGTTATCAATTTTCCT 1861
||||||||||||| || ||| |||||||||||||||| || |||||||||||||||||
Sbjct 1753 GATTGTTGTGTTTTATCCTTTATTTTGTCGCAAGTACTACT--ATGTTATCAATTTTCCT 1810
Query 1862 ATCCAATTATCGATCAATGAAAAATTTTCTTTCTGATT 1899
|||||||| |||||||||||||||||||||||||||||
Sbjct 1811 ATCCAATTTTCGATCAATGAAAAATTTTCTTTCTGATT 1848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71343028885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5