BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14060.1
Length=2229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488237 jgi|Araly1|488237|fgenesh2_kg.6__1371__AT5G14060.1 3374 0.0
Ahg927551 jgi|Araly1|927551|scaffold_300008.1 1535 0.0
> Ahg488237 jgi|Araly1|488237|fgenesh2_kg.6__1371__AT5G14060.1
Length=2205
Score = 3374 bits (1827), Expect = 0.0
Identities = 2095/2219 (94%), Gaps = 40/2219 (2%)
Strand=Plus/Plus
Query 2 AAAGATGTCAACATTATTTCATGGATTAACACAAA-GTACAAATTTTAGTAGAGTGGCTT 60
||||||| | |||||||||||| |||||||||||| |||| || ||||||||||||||||
Sbjct 1 AAAGATGGCGACATTATTTCAT-GATTAACACAAATGTAC-AA-TTTAGTAGAGTGGCTT 57
Query 61 ACTAATAGCTGAAAGGGTATCTCGACCCAGAGATTGAATCTGAACCGTCCATTCTGGGAA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 58 ACTAATAGCTGAAAGGGTATCTCGATCCAGAGATTGAATCTGAACCGTCCATTCTTGGAA 117
Query 121 GGGCAAACAAAACAGTGTTTGTG--T-CTCACGTTCTCTTCCTTCTCTAAT-A-GAGTCT 175
||||||||| | || ||||||| | |||||||||||| ||||||||||| | | ||||
Sbjct 118 GGGCAAACAGAGTAGCGTTTGTGTCTCCTCACGTTCTCTGCCTTCTCTAATAATG-GTCT 176
Query 176 TAAGCCGCTTTTTCACTCCTT--AAACCCaaaa-aaaaaC----ATTAGTACTATTTCCT 228
||||||||||||||||| ||| ||| | |||| |||||| | | || ||||||||
Sbjct 177 TAAGCCGCTTTTTCACT-CTTCAAAAACAAAAACAAAAACAAAAAAAATTAGTATTTCCT 235
Query 229 TCGGAGCCTGGCCGGCGAATCCGA-CAGGTCGTTTCAGCTGTGTCCGAAGGAAAGTTCCA 287
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 236 TCGGAGCCTGGCCGGCGAATCCGATC-GGTCGTTTCAGCTGTGTCCGAAGGAAAGTTCCA 294
Query 288 ATTTTTATCTGTTTTTCTTCACGGAAATCCAGTTAAGGTTTCCACATTGCACAGCTGTAC 347
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ATTTTTA-CTGTTTTTATTCACGGAAATCCAGTTAAGGTTTCCACATTGCACAGCTGTAC 353
Query 348 CATTTGTCGAGATCACAACACGCAAGTCTCTTAGATTTAGCAAGCTT--AT---GGCTTC 402
||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||
Sbjct 354 CATTTGTCGAGATCACAACACTCAAGTCTCTTAGATTTAGCAAGCTTCAATGACGGCTTC 413
Query 403 ATTGCAGTTGTACGGAGTTAAAACTCCAGGGCTTGCTTTAAGTTCAAAGAGGCTTGAGTT 462
|||||| ||||||||||||||| |||||| |||||| |||||||||||||||||||| ||
Sbjct 414 ATTGCACTTGTACGGAGTTAAAGCTCCAGTGCTTGCGTTAAGTTCAAAGAGGCTTGATTT 473
Query 463 T-GCTTCAAAGGGGGCAT-GTTTTTCAGTTACGTTGCCCTCAAGTAGTGCTGTCTTTAGA 520
| || ||||||||| | | |||||||||||| ||||| ||||||||||| || ||||||
Sbjct 474 TGGC-TCAAAGGGGAC-TACTTTTTCAGTTACATTGCCTTCAAGTAGTGCAGTTTTTAGA 531
Query 521 GACGTAGAGCATTCTTGTAGGAATATAGGTTTGAGAGTTAGTTGTGAAGCTCTAAGAGTC 580
| |||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||
Sbjct 532 GCCGTAGAGCATTCTTGTAGGAATATAGCTTTGAGAGTTAGTTGTGAAGATGTAAGAGTC 591
Query 581 GATTTGCTTCAAAGAAAAGAGCCTGAGACGTGCGATTCAAGCGGAACTGGCAAAGAGTTG 640
||||||||| ||||||||||||| ||||| ||| ||||||||| ||||||||||||||||
Sbjct 592 GATTTGCTTGAAAGAAAAGAGCCCGAGACTTGCAATTCAAGCGCAACTGGCAAAGAGTTG 651
Query 641 ACATGTGTAATGAAATTTGGCGGTTCATCAGTGGAATCAGCAGAGAGGATGAAAGAAGTT 700
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 ACATGTGTAATGAAATTCGGCGGTTCATCAGTGGAATCAGCAGAGAGGATGAAAGAAGTT 711
Query 701 GCCAATCTTATACTCAGCTTTCCAGATGAGAGGCCCGTCATTGTGCTATCAGCAATGGGA 760
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 712 GCCAATCTTATACTCAGCTTTCCAGATGAGAGGCCCGTCATTGTGTTATCAGCAATGGGA 771
Query 761 AAGACGACTAATAAGCTTTTGAAGGCTGGAGAGAAGGCTGTTACTTGCGGTGTCACTAAC 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AAGACGACTAATAAGCTTTTGAAGGCTGGAGAGAAGGCTGTTACTTGCGGTGTCACTAAC 831
Query 821 GTAGAAAGTATTGAAGAATTGAGCTTTATAAAGGAACTCCATTTAAGAACTGCTCATGAG 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GTAGAAAGTATTGAAGAATTGAGCTTTATAAAGGAACTCCATTTAAGAACTGCTCATGAG 891
Query 881 CTTGGAGTGGAAACAACGGTTATTGAAAAACACCTAGAAGGACTACACCAGCTTCTCAAA 940
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 892 CTTGGAGTGGAAACAACGGTTATTGAAAAACACCTAGAAGGACTACACCAGCTTCTTAAA 951
Query 941 GGCATATCAATGATGAAAGAGCTAACCTTACGCACAAGGGACTACTTGGTTTCATTTGGA 1000
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 952 GGCATATCAATGATGAAAGAATTAACCTTACGTACAAGGGACTACTTGGTTTCATTTGGA 1011
Query 1001 GAGTGCATGTCCACAAGGCTTTTCTCTGCGTATCTCAATAAAATTGGCCACAAAGCGCGT 1060
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GAGTGCATGTCCACTAGGCTTTTCTCTGCGTATCTCAATAAAATTGGCCACAAAGCGCGT 1071
Query 1061 CAATATGATGCATTTGAGATCGGATTTATCACCACAGACGACTTTACTAATGCTGATATA 1120
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 1072 CAATATGATGCATTTGAGATCGGGTTTATTACCACAGACGACTTTACAAATGCTGATATA 1131
Query 1121 CTTGAAGCAACATACCCTGCCGTCTCAAAAACACTTGTTGGCGACTGGAGCAAGGAAAAT 1180
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1132 CTTGAAGCAACGTACCCTGCCGTCTCAAAAACACTAGTTGGCGATTGGAGCAAGGAAAAT 1191
Query 1181 GCAGTCCCTGTTGTTACTGGCTACCTCGGAAAGGGATGGAGGTCTTGTGCTATCACTACG 1240
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1192 GCAGTCCCTGTTGTTACTGGCTTCCTCGGAAAGGGATGGAGGTCTTGTGCTATAACTACG 1251
Query 1241 CTGGGTAGGGGTGGCAGTGATTTGACAGCTACAACGATTGGGAAAGCGCTAGGACTGCGG 1300
|||||||||||||||| || ||||| ||||||||||||||||||||| |||||||||||
Sbjct 1252 TTGGGTAGGGGTGGCAGCGACTTGACGGCTACAACGATTGGGAAAGCGTTAGGACTGCGG 1311
Query 1301 GAAATTCAGGTTTGGAAAGATGTGGATGGAGTTTTGACTTGTGATCCTAACATATATCCT 1360
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1312 GAAATTCAGGTTTGGAAGGATGTAGATGGAGTTTTGACTTGTGATCCTAACATATATCCT 1371
Query 1361 GGAGCTCAATCTGTTCCGTACTTAACGTTCGATGAGGCAGCTGAGCTTGCTTACTTTGGT 1420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GGAGCTCAATCTGTTCCATACTTAACGTTCGATGAGGCAGCTGAGCTTGCTTACTTTGGT 1431
Query 1421 GCCCAGGTGTTGCATCCACTGTCTATGAGGCCAGCAAGAGATGGCGACATTCCTGTGAGG 1480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1432 GCCCAGGTGTTGCATCCACTGTCTATGAGGCCAGCAAGAGATGGCGACATTCCTGTAAGG 1491
Query 1481 GTTAAGAACTCGTACAACCCCACTGCTCCAGGAACTGTCATCACCAGATCAAGAGACATG 1540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 GTGAAGAACTCGTACAACCCCACTGCTCCAGGAACTGTCATCACCAGATCAAGAGACATG 1551
Query 1541 AGTAAGGCTGTGCTAACCAGCATTGTTCTGAAACGTAATGTGACCATGTTGGACATAGCA 1600
|||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1552 AGTAAGGCCGTGCTGACAAGCATTGTTCTGAAACGCAATGTGACCATGTTGGACATAGCA 1611
Query 1601 AGCACCCGTATGCTTGGCCAATATGGTTTCCTTGCCAAGGTGTTTACCACATTTGAAGAT 1660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1612 AGCACCCGTATGCTTGGCCAGTATGGTTTCCTTGCCAAGGTGTTTACCACATTTGAAGAT 1671
Query 1661 TTAGGTATATCGGTTGATGTTGTGGCAACAAGTGAAGTTAGTATATCATTGACATTGGAT 1720
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 TTAGGCATATCGGTCGATGTTGTGGCAACAAGTGAAGTTAGTATATCATTGACATTGGAT 1731
Query 1721 CCAGCAAAGCTCTGGGGTAGAGAGTTAATTCAGCGAGTAAATGAACTGGATAATTTGGTG 1780
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1732 CCAGCAAAGCTCTGGGGTAGAGAGTTAATTCAGCGGGTAAATGAACTGGATAATTTGGTG 1791
Query 1781 GAAGAGCTAGAGAAGATTGCTGTTGTGAAACTACTTCAACGCAGATCAATCATCTCTCTC 1840
||||||||||| |||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 1792 GAAGAGCTAGAAAAGATTGCTGTTGTGAAACTGCTGCAGCGCAGATCAATCATCTCTCTC 1851
Query 1841 ATAGGAAATGTTCAGAAATCCTCACTCATATTAGAGAAGGTGTTCCAAGTATTTAGAAGC 1900
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1852 ATAGGAAATGTTCAGAAATCCTCACTCATATTAGAGAAGGTGTTCCAAGTACTTAGAAGC 1911
Query 1901 AATGGAGTGAATGTGCAGATGATCTCGCAGGGTGCATCTAAGGTAAACATCTCATTGATA 1960
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1912 AATGGAGTGAATGTGCAGATGATCTCGCAGGGTGCATCTAAGGTAAACATCTCGTTGATA 1971
Query 1961 GTGAATGATGAAGAGGCAGAGCAATGTGTGAGGGCTCTCCACTCCGCCTTCTTTGAGACC 2020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 GTGAATGATGAAGAGGCAGAGCAATGTGTGAGGGCTCTCCACTCCGCCTTCTTTGAGACC 2031
Query 2021 GATCCTTAGTGCAACACAGAGCACCCATCTCTCTCCTTCAACTCTGCTTCTGTGCGTAGT 2080
||| |||||||||||||||||| | || |||||||||||||||||||||||||||||||
Sbjct 2032 GATTCTTAGTGCAACACAGAGC-C--ATTTCTCTCCTTCAACTCTGCTTCTGTGCGTAGT 2088
Query 2081 TTAATGCTAAGAATGTGTCAAGACTTGGAACTATTTCAAATTCTTGTCC--Attgttgtt 2138
|||||||||||||||||| |||||||||||| | |||| |||||||| | |||||||||
Sbjct 2089 TTAATGCTAAGAATGTGTTAAGACTTGGAACAACTTCACATTCTTGTTCTTATTGTTGTT 2148
Query 2139 gtt---gttgttgttgttgttgtGATACAATACATCATAATTTGAGCCAAAGCCTATAA 2194
||| |||||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 2149 GTTTCTGTTGTTGTTGTTGTTGTGATACAATA-A-CATAATCTGAGCCAAAGCCTATAA 2205
> Ahg927551 jgi|Araly1|927551|scaffold_300008.1
Length=1732
Score = 1535 bits (831), Expect = 0.0
Identities = 1385/1648 (84%), Gaps = 56/1648 (3%)
Strand=Plus/Plus
Query 397 GGCTTCATTGCAGTTGTACGGAGTTAAAACTCCAGGGCTTGCTTTAAGTTCAAAGAG-GC 455
||||||| ||||||| ||||||||| |||| |||| ||||| |||| ||||| || |
Sbjct 29 GGCTTCAATGCAGTTCTACGGAGTTCAAACACCAGAACTTGCCTTAAACTCAAA-AGCGA 87
Query 456 TTGAGTTT-GCTTCAAAGGGGGCATG--TTTTTCAGTTA--CGTTGCCCTCAAG-TAGTG 509
|||||||| || ||||| ||||| || ||| |||| | || || |||| | | |||
Sbjct 88 TTGAGTTTGGC-TCAAA-GGGGC-TGAATTTCTCAG-CACTCG-TGTCCTC-TGCTCGTG 141
Query 510 CT-GTCTTTAGAGACGTAGAGCATTCTTGTAGGAATATAGGTTTGAGAGTTAGTTGTGAA 568
| ||| |||| ||||||| ||| |||||| ||| || | | ||||||||| |||||||
Sbjct 142 -TATTCTCTAGAAACGTAGATCATGCTTGTAAGAACATCGCTCTGAGAGTTACTTGTGAA 200
Query 569 GCTC-TAAGAGTCGATTTGCTTCAAAGAAAAGAGC-CTGAGACGTGCGA-TTCAAGCGGA 625
|| | |||||| || |||| ||||||||| || | ||||| | | | || || | ||
Sbjct 201 GC-CGGAAGAGTGGAGCTGCTAGAAAGAAAAG-GCTCAGAGACTTTCAAGTT-AAACAGA 257
Query 626 ACTG-GCAAAGAGTTGACATGTGTAATGAAATTTGGCGGTTCATCAGTGGAATCAGCAGA 684
|||| | ||| | ||||||||||||||||||||||| || |||||||||| |||||||||
Sbjct 258 ACTGAG-AAAAAATTGACATGTGTAATGAAATTTGGTGGCTCATCAGTGGCATCAGCAGA 316
Query 685 GAGGATGAAAGAAGTTGCCAATCTTATACTCAGCTTTCCAGATGAGAGGCCCGTCATTGT 744
||||||||| |||||||||| || ||||||||||| ||||| |||| ||| || ||||
Sbjct 317 AAGGATGAAACAAGTTGCCAAACTCATACTCAGCTTCCCAGACGAGAAGCCTGTTGTTGT 376
Query 745 GCTATCAGCAATGGGAAAGACGACTAATAAGCTTTTGAAGGCTGGAGAGAAGGCTG-TTA 803
|||||||||||||| |||||| || ||||||||||||| ||||||||||||||||| ||
Sbjct 377 GCTATCAGCAATGGCAAAGACCACCAATAAGCTTTTGATGGCTGGAGAGAAGGCTGTTTG 436
Query 804 CTTGCGGTGTCACTAACGTAGAAAGTATTGAAGAATTGAGCTTTATAAAGGAACTCCATT 863
| ||||||||||| ||||| || | ||||||||| ||||||| ||||||||||||||||
Sbjct 437 C-TGCGGTGTCACCAACGTCGACACTATTGAAGAGTTGAGCTATATAAAGGAACTCCATA 495
Query 864 TAAGAACTGCTCATGAGCTTGGAGTGGAAACAACGGTTATTGAAAAACACCTAGAAGGAC 923
|||| ||||||||||||||||||||||||||| | ||||||| | ||||| |||||||||
Sbjct 496 TAAGGACTGCTCATGAGCTTGGAGTGGAAACATCAGTTATTGCAGAACACTTAGAAGGAC 555
Query 924 TACACCAGCTTCTCAAAGGCATATCAATGATGAAAGAGCTAACCTTACGCACAAGGGACT 983
| | |||||||| |||||||| ||||||||||||| |||| |||||| |||| || |
Sbjct 556 TGGAACAGCTTCTGAAAGGCATCGCAATGATGAAAGAATTAACTTTACGCTCAAGAGATT 615
Query 984 ACTTGGTTTCATTTGGAGAGTGCATGTCCACAAGGCT-TTTCTCTGCGTATC-TCAATAA 1041
||||||||||||||||||| ||||||||||||||||| ||| ||||||| | | || ||
Sbjct 616 ACTTGGTTTCATTTGGAGAATGCATGTCCACAAGGCTATTT-GCTGCGTA-CTTGAACAA 673
Query 1042 AATTGGCCACAAAGCGCGTCAATATGATGCATTTGAGA-TCGGATTTATCACCACAGACG 1100
|||||| |||||||| || || |||||||||||||||| | ||| ||||||||||||| |
Sbjct 674 AATTGGGCACAAAGCACGACAGTATGATGCATTTGAGATTGGGA-TTATCACCACAGATG 732
Query 1101 ACTTTACTAATGCTGATATACTTGAAGCAACATACCCTGCCGTCTCAAAAACACTT-GTT 1159
|||| |||||||||||||| ||||| ||||||||||| || || ||||||| | || ||
Sbjct 733 ACTTCACTAATGCTGATATTCTTGAGGCAACATACCCGGCGGTTTCAAAAA-AGTTACTT 791
Query 1160 GGCGACTGGAGCAAGGAAAATGCAGTCCCTGTTGTTACTGGCTACCTCGGAAAGGGATGG 1219
|| |||||||||||||||||||||||||| |||| || |||| ||| ||||||||||||
Sbjct 792 GGTGACTGGAGCAAGGAAAATGCAGTCCCCATTGTCACAGGCTTCCTTGGAAAGGGATGG 851
Query 1220 AGGTCTTGTGCTATCACTACGCTGGGTAGGGGTGGCAGTGATTTGACAGCTACAACGATT 1279
|| ||||||||| | |||||||| ||||| || || || |||||||| || ||||||||
Sbjct 852 AGATCTTGTGCTGTAACTACGCTTGGTAGAGGAGGTAGCGATTTGACTGCAACAACGATC 911
Query 1280 GGGAAAGCGCTAGGACTGCGGGAAATTCAGGTTTGGAAAGATGTGGATGGAGTTTTGACT 1339
||||| || |||| ||||||| || |||||||||||||||||||||||||||||||||
Sbjct 912 GGGAAGGCTTTAGGTTTGCGGGAGATCCAGGTTTGGAAAGATGTGGATGGAGTTTTGACT 971
Query 1340 TGTGATCCTAACATATA-TCCTGGAGCTCAATCTGTTCCGTACTTAACGTTCGATGAGGC 1398
|||||||| ||||| || | | ||||||||| ||||||| |||| || || ||||||||
Sbjct 972 TGTGATCCAAACATTTACTGC-GGAGCTCAACCTGTTCCACACTTGACATTTGATGAGGC 1030
Query 1399 AGCTGAGCTTGCTTACTTTGGTGCCCAGGTGTTGCATCCACTGTCTATGAGGCCAGCAAG 1458
||||| ||||||||||||||||||||||||||||||||||| || ||| | |||||| |
Sbjct 1031 TGCTGAACTTGCTTACTTTGGTGCCCAGGTGTTGCATCCACTTTCCATGCGCCCAGCACG 1090
Query 1459 AGATGGCGACATTCCTGTGAGGGTTAAGAACTCGTACAACCCCACTGCTCCAGGAACTGT 1518
||| || |||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1091 AGAAGGTAACATTCCTGTAAGGGTTAAGAACTCTTACAATCCCACTGCTCCAGGAACTGT 1150
Query 1519 CATCACCAGATCAAGAGACATGAGTAAGGCTGTGCTAACCAGCATTGTTCTGAAACGTAA 1578
|||||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||
Sbjct 1151 CATCACCAGATCAAGAGACATGAGCAAGGCTGTATTGACCAGCATCGTTCTGAAACGTAA 1210
Query 1579 TGTGACCATGTTGGACAT-AGCAAGCACCCGTATGCTTGGCCAATATGGTTTCCTTGCCA 1637
||| |||||||| ||||| | | |||||||||||||| |||||||||||||||||| |||
Sbjct 1211 TGTTACCATGTTAGACATCA-CTAGCACCCGTATGCTCGGCCAATATGGTTTCCTTTCCA 1269
Query 1638 AGGTGTTTACCACATTTGAAGATTTAGGTATATCGGTTGATGTTGTGGCAACAAGTGAAG 1697
|||||||| ||||||||||| | || || ||||| || |||||||| ||||| || ||||
Sbjct 1270 AGGTGTTTTCCACATTTGAAAAGTTGGGCATATCTGTGGATGTTGTTGCAACCAGCGAAG 1329
Query 1698 TTAGTATATCATTGACATTGGATCCAGCAAAGCTCTGGGGTAGAGAGTTAATTCAGCGAG 1757
|||| || || |||||||||||||| ||||| |||| | ||||| |||||||||| |
Sbjct 1330 TTAGCATTTCCTTGACATTGGATCCTTCAAAGTTCTGCAGCAGAGAATTAATTCAGC-A- 1387
Query 1758 TAAATGAACTGGAT-AATTTGGTGGAAGAGCTAGAGAAGATTGCTGTTGTGAAA-CTACT 1815
| | | || ||| || | ||| || || || |||||||||||| |||| ||| || ||
Sbjct 1388 TGA--G--CTTGATCAAGT-GGTTGAGGAACTTGAGAAGATTGCTATTGT-AAATCTGCT 1441
Query 1816 TCAACGCAGATCAATCATCTCTCTCATAGGAAATGTTCAGAA-ATCCTCACTCATATTAG 1874
|| || ||||||||| ||||| ||||| ||||||||||| || ||| ||| |||||||||
Sbjct 1442 TCGACACAGATCAATTATCTCCCTCATCGGAAATGTTCA-AAGATCATCATTCATATTAG 1500
Query 1875 AGAAGGTG-TTCCAAGTAT-TTAGAAGCAATGG-AGTGAATGTGCAGATGATCTCGCAGG 1931
|||||| | |||| ||| | || ||| |||||| | | ||||| ||||||||||| || |
Sbjct 1501 AGAAGG-GCTTCCGAGT-TCTTCGAACCAATGGGATT-AATGTCCAGATGATCTCCCAAG 1557
Query 1932 GTGCATCTAAGGTAAACATCTCATTGATAGTGAATGATGAAGAGGCAGAGCAATGTGTGA 1991
||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |||||||
Sbjct 1558 GTGCATCTAAGGTAAACATCTCACTGATAGTGAATGATGATGAGGCGGAGCATTGTGTGA 1617
Query 1992 GGGCTCTCCACTCCGCCTTCTTTGAGAC 2019
|||||||||||| ||||||||||||||
Sbjct 1618 AGGCTCTCCACTCGGCCTTCTTTGAGAC 1645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83912809735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5