BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14070.1
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488239 jgi|Araly1|488239|fgenesh2_kg.6__1373__AT5G14070.1 773 0.0
Ahg477310 jgi|Araly1|477310|fgenesh2_kg.3__11__AT3G02000.1 279 1e-74
> Ahg488239 jgi|Araly1|488239|fgenesh2_kg.6__1373__AT5G14070.1
Length=501
Score = 773 bits (418), Expect = 0.0
Identities = 477/505 (94%), Gaps = 6/505 (1%)
Strand=Plus/Plus
Query 1 CAACCAActctcacacaaattctctcgctctctcactctcttattctctttctctttttc 60
|||||||||| ||| || ||||||||||||||| | ||| ||||||||||| || |
Sbjct 1 CAACCAACTCACACCCACATTCTCTCGCTCTCT--GTAGCTTCTTCTCTTTCTC--TTCC 56
Query 61 tctAAGAATAC--aaaaaaaGATGCAATACAAAACAGAAACTCGAGGGTCGTTGTCCTAC 118
||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 57 TCTAAAAATACAAAAAAAAAAATGCAATACAAAACAGAAACTCGAGGGTCGTTGTCCTAC 116
Query 119 AACAACAACAGTAAGGTGATGAACAACATGAATGTGTTTCCGTCGGAGACACTGGCGAAG 178
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AACAACAATAGCAAGGTGATGAACAACATGAATGTGTTTCCGTCGGAGACACTGGCGAAG 176
Query 179 ATAGAGTCGATGGCGGCAGAGAATGCGGTGGTTATATTCAGCGTGAGCACTTGCTGCATG 238
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 177 ATAGAGTCGATGGCTGCAGAGAATGCGGTGGTTATATTCAGCGTGAGCACGTGCTGCATG 236
Query 239 TGCCATGCCATCAAGCGTCTCTTCCGTGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTC 298
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 237 TGCCACGCCATCAAGCGTCTCTTCCGTGGAATGGGGGTCAGCCCCGCCGTCCACGAGCTC 296
Query 299 GACCTCCTCCCTTACGGAGTTGAAATCCACCGAGCTCTCCTCCGTCTCCTTGGCTGTTCC 358
||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||
Sbjct 297 GACCTCCTCCCTTACGGCGTTGAAATCCACCGAGCTCTCATTCGTCTCCTGGGCTGTTCC 356
Query 359 AGCGGTGGCGCCACATCTCCGGGGGCACTTCCGGTGGTGTTCATCGGAGGGAAGATGGTA 418
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AGCGGTGGCGCTACTTCTCCGGGGGCACTTCCGGTGGTGTTCATCGGAGGGAAGATGGTA 416
Query 419 GGAGCAATGGAGAGAGTGATGGCTTCACATATCAATGGCTCACTCGTCCCTCTTCTCAAA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGAGCAATGGAGAGAGTGATGGCTTCACATATCAATGGCTCACTCGTCCCTCTTCTCAAA 476
Query 479 GATGCTGGCGCTCTTTGGCTCTGAT 503
|||||||||||||||||||||||||
Sbjct 477 GATGCTGGCGCTCTTTGGCTCTGAT 501
> Ahg477310 jgi|Araly1|477310|fgenesh2_kg.3__11__AT3G02000.1
Length=619
Score = 279 bits (151), Expect = 1e-74
Identities = 269/326 (83%), Gaps = 8/326 (2%)
Strand=Plus/Plus
Query 179 ATAGAGTCGATGGCGGCAGAGAATGCGGTGGTTATATTCAGCGTGAGCACTTGCTGCATG 238
||||||||| ||||||| |||| |||||||| || |||||||||||||| |||||||||
Sbjct 111 ATAGAGTCGCTGGCGGCTGAGAGCGCGGTGGTGATCTTCAGCGTGAGCACGTGCTGCATG 170
Query 239 TGCCATGCCATCAAGCGTCTCTTCCGTGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTC 298
||||| ||| | ||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 171 TGCCACGCCGTGAAGGGTCTCTTCCGAGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTC 230
Query 299 GACCTCCTCCCTTACGGAGTTGAAATCCACCGAGCTCTCCTCCGTCTCCTTGGCTGTTCC 358
||||||| ||| ||||| | || ||||| ||||| ||| | ||||| || ||||| |||
Sbjct 231 GACCTCCACCCCTACGGCGGCGACATCCAGCGAGCCCTCATTCGTCTTCTCGGCTGCTCC 290
Query 359 AGCGGTGGCGCCACATCTCCGGGGGCACTTCCGGTGGTGTTCATCGGAGGGAAGA-TGGT 417
|| | | | | ||||| ||| | |||||||| || |||||||| || || | ||||
Sbjct 291 GGC--T--C-CT-CTTCTCCAGGGTCTCTTCCGGTCGTCTTCATCGGCGGCAA-ACTGGT 343
Query 418 AGGAGCAATGGAGAGAGTGATGGCTTCACATATCAATGGCTCACTCGTCCCTCTTCTCAA 477
||||| ||||| ||||| |||||||| || ||||| ||||| ||||| ||||| |||||
Sbjct 344 TGGAGCTATGGACAGAGTCATGGCTTCTCACATCAACGGCTCTCTCGTTCCTCTCCTCAA 403
Query 478 AGATGCTGGCGCTCTTTGGCTCTGAT 503
||| || || ||||| ||||||||||
Sbjct 404 AGACGCCGGAGCTCTCTGGCTCTGAT 429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24932387718
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5