BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14080.1
Length=2069
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940877 jgi|Araly1|940877|scaffold_601421.1 2863 0.0
> Ahg940877 jgi|Araly1|940877|scaffold_601421.1
Length=1945
Score = 2863 bits (1550), Expect = 0.0
Identities = 1802/1927 (94%), Gaps = 4/1927 (0%)
Strand=Plus/Plus
Query 1 ATGAGACCTGCGACGGAGCTTGCGGTGAGGATCGGCCGAGAGCTGCTAAAAGTTTCCGGA 60
|||||||||||| ||||||||||||||||||| ||| | ||||| |||||||||||||||
Sbjct 21 ATGAGACCTGCGGCGGAGCTTGCGGTGAGGATTGGCTGTGAGCTTCTAAAAGTTTCCGGA 80
Query 61 AGCTCTCGAGCTGCTCGGATATGGAGTCCATTGATTGAACAGAGTCTTCACGGTCTCGGT 120
||||||||| | ||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 81 AGCTCTCGATCAGCTCGGATATGGAGTCCATCGGTTGAACAGAGCCTTCACGGTCTCGGT 140
Query 121 TTTCGTCACTCAATAAGCCCTTCGCTTGTGGCTCGAGTCATAGACCCGTTTCTGCTGAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 141 TTTCGTCACTCAATAAGCCCTTCGCTTGTGGCTCGAGTCATAGACCCGTTTCTCCTGAAC 200
Query 181 CATCATTCTCTTGCTCTCGGTTTCTTCAATTGGGCTGCTCAGCAACCAGGTTACTCTCAC 240
|| || || | ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 201 CACCACTCCCCCGCTCTCGGTTTCTTCAATTGGGCTGCTCAACAACCTGGTTACTCTCAC 260
Query 241 GACTCCATATCTTACCACTCTATCTTCAAGTCTCTTTCGCTTTCTCGTCAGTTCTCCGCC 300
|||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GACTCCGTCTCTTACCATTCTATCTTCAAGTCTCTTTCGCTTTCTCGTCAGTTCTCCGCC 320
Query 301 ATGGACGCTCTTTTCAAACAGGTTAAATCGAACAAAATCCTTCTCGATTCTTCCGTGTAT 360
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 321 ATGGACGCTCTCTTCAAACAGGTCAAATCGAACAAAATCCTTCTCGATTCTTCCGTGTAT 380
Query 361 CGCTCCCTCATTGATACGCTTGTGCTGGGTAGGAAAGCTCAGAGTGCGTTTTGGGTTTTA 420
||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct 381 CGCTCCCTCATTGATGCGCTAGTGTTGGGTAGGAAATCTCAGAGTGCGTTTTGGGTTTTA 440
Query 421 GAAGAAGCTTTTTCAACGGGTCA-GGAGATTCATCCCGATGTATGCAATCGTCTTTTAGC 479
||||||||| |||| |||||| | |||||||||||||||||| |||||||||||||| ||
Sbjct 441 GAAGAAGCTCTTTCGACGGGT-AGGGAGATTCATCCCGATGTTTGCAATCGTCTTTTGGC 499
Query 480 TGGTTTAACTTCTGATGGATGTTATGATTATGCACAGAAACTGTTTGTTAAAATGCGTCA 539
|| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||
Sbjct 500 TGCTTTAACTTCTGATGGGTGTTTTGATTATGCACAGAAACTGTTTGTTAAAATGCGCCA 559
Query 540 TAA-AGGTGTTTCGTTGAACACTCTTGGATTCGGTGTCTATATAGGATGGTTCTGTAGAA 598
|| ||||||||| ||||| |||||||| ||||| || ||||||||| | || |||| ||
Sbjct 560 -AAGAGGTGTTTCTTTGAATACTCTTGGCTTCGGCGTTTATATAGGAAGTTTTTGTACAA 618
Query 599 GTTCTGAAACGAATCAGCTCTTGAGATTGGTGGATGAGGTTAAAAAGGCTAATTTGAATA 658
||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 619 GTTCTGAAACGGATCAGCTCTTGAGATTGGTGGATGAGGTTAAAAAGGCTAACTCGAACA 678
Query 659 TCAATGGCTCAATCATTGCACTGTTGATTCTCCATAGTCTTTGTAAGTGTTCACGAGAAA 718
|||||||||| || ||||||||||||||||||||| |||||||||||| ||| ||| |||
Sbjct 679 TCAATGGCTCCATTATTGCACTGTTGATTCTCCATGGTCTTTGTAAGTCTTCTCGACAAA 738
Query 719 TGGATGCTTTTTATATATTGGAAGAGCTAAGGAACATAGATTGCAAACCGGATTTTATGG 778
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 739 TGGATGCTTTTTATATTTTGGAAGAGCTGAGAAACATAGATTGCAAACCGGATTTTATGG 798
Query 779 CTTATAGGGTCATAGCTGAAGCGTTTGTAGTTACTGGGAATCTGTATGAGAGACAGGTTG 838
||||||| ||||||||||||| |||||||||||||||||| ||||||||||||| || |
Sbjct 799 CTTATAGAATCATAGCTGAAGCATTTGTAGTTACTGGGAATTTGTATGAGAGACAAGTCG 858
Query 839 TTTTAAAGAAGAAGAGAAAGCTCGGAGTAGCACCTAGGAGCAGCGATTACCGAGCTTTTA 898
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 859 TTCTAAAGAAGAAGAGAAAGCTCGGAGTAGCACCCAGGAGCAGCGATTACCGAGCTTTCA 918
Query 899 TTCTGGATTTGATTTCAGCTAAGCGATTAACGGAGGCTAAGGAAGTGGCTGAGGTGATTG 958
| |||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||||
Sbjct 919 TACTGGATTTGATTTCCGCTAAAAGATTAATGGAGGCTAAGGAAGTAGCTGAGGTGATTG 978
Query 959 TGAGTGGAAAATTCCCTATGGATAATGATATCTTAGACGCGTTGATTGGATCTGTCTCTG 1018
|||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 979 TGAGTGGAAATTTCCCCATGGATAATGATATCTTAGACGCGTTAATTGGATCAGTCTCTG 1038
Query 1019 CAGTTGATCCAGATTCTGCTGTTGAATTCTTAGTTTACATGGTCAGCACAGGGAAATTGC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 CAGTTGATCCAGATTCTGCTGTTGAATTCTTAGTTTACATGGTCAGCACAGGGAAATTGC 1098
Query 1079 CTGCTATTCGGACTCTGAGCAAGTTAAGTAAGAATCTTTGCAGGCATGACAAGAGTGATC 1138
|||||||||||||||||||||| || ||||||||||| |||||||| |||||||| || |
Sbjct 1099 CTGCTATTCGGACTCTGAGCAAATTGAGTAAGAATCTCTGCAGGCACGACAAGAGCGACC 1158
Query 1139 ATCTGATAAAGGCTTATGAGCTTTTGTCAAGCAAAGGTTATTTCTCAGAACTTCAGAGTT 1198
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1159 ATCTGATAAAGGCTTATGAGCTTTTGTCAAGCAAAGGTTATTTCTCAGATCTTGAGAGTT 1218
Query 1199 ACAGTCTGATGATATCGTTCTTGTGCAAGGCTGGGAGAGTCAGAGAAAGTTACACTGCTC 1258
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1219 ACAGTCTGATGATATCGTTCTTGTGCAAGGCCGGGAGAGTCAGAGAAGGTTACACTGCTC 1278
Query 1259 TGCAAGAAATGAAGAAGGAAGGGCTTGCTCCAGACGTTTCACTCTATAACGCTCTCATTG 1318
|||| |||||||||||| ||||||||| |||||| || ||||||||||||||||||||||
Sbjct 1279 TGCACGAAATGAAGAAGAAAGGGCTTGATCCAGATGTGTCACTCTATAACGCTCTCATTG 1338
Query 1319 AAGCTTGTTGCAAAGCGGAAATGATCCGTCCAGCAAAGAAACTGTGGGATGAGATGTTTG 1378
| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 ATGCTTGCTGCAGAGCGGAAATGATCCGTCCAGCAAAGAAACTGTGGGATGAGATGTTTG 1398
Query 1379 TGGAGGGCTGCAAAATGAATCTGACGACATATAATGTACTTATTAGGAAATTATCAGAGG 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1399 TGGAGGGCTGCAAAATGAATCTGACGACATATAATGTACTTATTAGGAAATTATCAGAAG 1458
Query 1439 AAGGCGAGGCAGAGGAGTCTTTAAGGCTGTTTGACAAGATGCTTGAGAGAGGGATAGAAC 1498
|||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||| |
Sbjct 1459 AAGGCGAGGCAGAGGAGTCTTTGAGGCTGTTTCAGAAGATGCTTGAGAAAGGGATAGACC 1518
Query 1499 CAGATGAAACAATCTATATGTCACTCATTGAAGGCCTATGCAAGGAGACAAAAATTGAAG 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1519 CAGATGAAACAATCTATATGTCACTCATTGAAGGCCTATGCAAGGAGACAAAACTTGAAG 1578
Query 1559 CTGCTATGGAAGTTTTCAGAAAGTGCATGGAGAGGGATCATAAAACAGTTACAAGAAGAG 1618
||||| ||||||| |||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 1579 CTGCTTTGGAAGTCTTCAGAAAGTGCATGGAGAGGGATAATAAAACAGCTGCAAGAAGAG 1638
Query 1619 TATTAAGCGAGTTTGTCTTAAATCTATGCAGCAACGGCCATTCTGGTGAGGCATCGCAGC 1678
||||||||| |||||| ||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1639 TATTAAGCGCGTTTGTATTAAATCTATGCAGCAACGGCCATTTTAGTGAGGCATCGCAGC 1698
Query 1679 TGCTGCGCGAGAGAGAACACTTAGAACACACAGGAGCACATGTCGTGTTGCTGAAATGTG 1738
|||||||||||| |||||||||| |||||||| | |||||||| ||||||||||||||||
Sbjct 1699 TGCTGCGCGAGAAAGAACACTTAAAACACACAAGTGCACATGTTGTGTTGCTGAAATGTG 1758
Query 1739 TGGCGGATGCGAAAGAGGTTGAGATTGGAATTAGACATATGCAATGGATCAAAGAGGTAT 1798
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1759 TGGCGGATGCGAAAGAGGTTGAGATTGGAATCAGACATATGAAATGGATCAAAGAGGTAT 1818
Query 1799 CGCCATCTCTTGTTCACACAATATCTTCTGACCTGTTGGCGTCTTTCTGTTCATCATCTG 1858
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1819 CGCCGTCTCTTGTTCACACAATATCTTCTGACCTGTTGGCGTCTTTCTGTTCATCATCTG 1878
Query 1859 ATCCTGATTCCATTCTTCCATTTATTCGAGCAATTGAGAACACATAATTACACCAATAGG 1918
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1879 ATCCTGATTCCATTCTTCCATTTATTCGAGCAATTGAGCACACATAATTACACCAATAGG 1938
Query 1919 CAATTAG 1925
| |||||
Sbjct 1939 CTATTAG 1945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77818370535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5