BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14090.1
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488241 jgi|Araly1|488241|fgenesh2_kg.6__1375__AT5G14090.1 2036 0.0
> Ahg488241 jgi|Araly1|488241|fgenesh2_kg.6__1375__AT5G14090.1
Length=1286
Score = 2036 bits (1102), Expect = 0.0
Identities = 1227/1288 (95%), Gaps = 5/1288 (0%)
Strand=Plus/Plus
Query 8 TGTAGCAACTGAAGCACGAAAATGAAGTTTTGGGGCTGGATGCATCATAAGTTCCGGGAG 67
||||||||||||| ||| |||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1 TGTAGCAACTGAATCACAAAAATGAAGTTTTGGGGCTGGATGCACCATAAGTCCCGGGAG 60
Query 68 AATAGCAAAGAGCCATTAAAAGATGCTTCTACTGGCAACAGCTATTCCATTCTTTCAGCT 127
||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 61 AATAGCAAAGAGCCATTGAAAGATGCTTCAACTGGTAACAGCTATTCCATCCTTTCAGCT 120
Query 128 CATCCATCCCTTGATAGCCAAGAGGTTTACCCAACAGCATGTGCTGGCTCCAGATACAAT 187
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 121 CATCCATCCCTTGATAGCCAAGAGGTTTACCCCACAGCATGTGCTGGCGCCAGATACAAT 180
Query 188 ACTGGATTCAGAAAACAGGTCAACCTGTTCCAGGAAAGCTCCTTCGCAGGACCCAAGCAA 247
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
Sbjct 181 ACTGGATTCAGAAAACAGGTTAACCTATTCCAGGAAAGCTCCTTCGCAGGACCCAAGGGA 240
Query 248 TACACAGAGGAAGACTTCAAGGATGAGAGAAACAGTGAtttttttGATGGATTTCTTGCC 307
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACACAGAAGAAAACTTCAAGGATGAGAGAAACAGTGATTTTTTTGATGGATTTCTTGCA 300
Query 308 ATTGGAACCCTTGGTGGAGAAACACTTCTTGATGAACAACCAGCAACGCCGACATTTGGC 367
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 ATTGGAACCCTTGGTGGAGAAACACTTCTTGATGAACAACCAGCAACACCGACATTTGGC 360
Query 368 ATGTCATTTGAGGACCCAGCAATAGATGATGCAGATGTGACAGAGAATGATTTGAAGCTC 427
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 ATGTCATTTGAGGACCCGGCAATAGATGATGCAGATGTTACAGAGAATGATTTGAAGCTC 420
Query 428 ATAAGCAATGAATTGGATAAGTTCCTTGAGGCTGAAGCTAAAGAAGGACACCACCAACCA 487
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATAAGCAATGAATTGGAGAAGTTCCTTGAGGCTGAAGCTAAAGAAGGACACCACCAACCA 480
Query 488 TCAGGAAGAAACAGTGACACTAACACTATTGCATCCACCATTGAGGCCATTGAGGGAGTA 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 TCAGGAAGAAACAGTGACACTAACACTATTGCATCCACCATTGAGGCCATTGAGGGACTA 540
Query 548 GATGATGAAGAAGATAATCAGCCAATGAAGTTCCCACTCCAAGAGTAtttttttGGATCT 607
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 541 GATGATGAAGAAGATAATCAGCCAATGAAGTTCCCACTCCAAGAGTATCTTTTTGGCTCT 600
Query 608 CTAATCGAACTCCCAGAATCAAAGATTGCAGGGAAGAAGGATAGGGCATCACTTGGCGAA 667
|||| |||| |||||||| ||||||||||||||||||| || |||||||||||||||||
Sbjct 601 CTAAACGAATTCCCAGAAACAAAGATTGCAGGGAAGAAAGAAAGGGCATCACTTGGCGAG 660
Query 668 CTGTTTCAAATAACAGAAGTGCAAGATAAACAAT-CAGAAAACATATATGGGAAGAAAAA 726
|||||||||||||||||||||| |||| || ||| |||||||||||||||||||||||||
Sbjct 661 CTGTTTCAAATAACAGAAGTGCTAGATGAA-AATTCAGAAAACATATATGGGAAGAAAAA 719
Query 727 GAAGCAACCCAATTCAGCTCACAAGTCCGCAAAGCATCTTGTGAAGAAGGTACTGAAAAA 786
||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 GAAGCAAACCAGTTCAGCTCACAAGTCCGCAAAGCATCTTGTGAAGAAGGTACTCAAAAA 779
Query 787 GATACACCCATCCTCAAGGGGCTCTGTCAGTGGTAAACCTGAAGTGGATTCCACAAAAAA 846
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 780 GATACACCCATCCTCAAGGGGCTCTGTCAGTGGTAAAACTGAAGTGGATTCCACAAAGAA 839
Query 847 GAAGTTCCAAAAGATGGTACAGGTTTTCCATAGGAAAGTACATCCAGAAGAATCCATAAT 906
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAAGTTCCAAAAGATGGTACAAGTTTTCCATAGGAAAGTACATCCAGAAGAATCCATAAT 899
Query 907 GGAAACCAAAATATACAGCAGCGTGGCAAATCCAAAAAGCAGCAAAGCAAATTCTATTGA 966
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 900 GGAAACCGAAATATACAGCAGCGTGGCAAATCCAAAAAACAGCAAAGCAAATTCTATTGA 959
Query 967 CTTAACATTCGAGAAGGTGAACCATTGTCACGAGGCAAGTAAAAGATGTATCCAGTATGA 1026
||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 960 CTTAACATTCGAGAAGGTGAACCCCTGTCATGAGGCAAGTAATAGATGTATCCAGTATGA 1019
Query 1027 GCTTAGAAGTTCTCGCTCAGCCAAAAACGGAGAACACTGGATCAAGACAGACGAAG-ACT 1085
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 1020 GCTGAGAAGTTCTCGCTCAGCCAAAAACAGAGAACACTGGATCAAGACAGACGAAGCA-T 1078
Query 1086 ATTTCGTGTTGGAACTGTAACAAAGGGATCAGAAGAACTATGTAAACTAAGAAGTGTAAG 1145
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1079 ATTTCGTGTTGGAGCTGTAGCAAAGGGATCAGAAGAAATATGTAAACTAAGAAGTGTGAG 1138
Query 1146 TGTATAATTTCACTTCATGCATGTGTGAATT-GTGTGGTATGATTAAGGAAAATGTGTTC 1204
| ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1139 TCTATTATGTCACTTCATGCATGTGTGAATTCGTGTGGTATGATTAAGGAAAATGTGTTC 1198
Query 1205 AAACTTACTGGGAATGTTTATTACGCCCCTCTATGTAATAATAAATGATAAAGGGTGTTA 1264
|||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 1199 AAACTTACTGGGAATGCTTATTACGCCCCTCTATGTAATAATAAATGTTACAGGGTGTTA 1258
Query 1265 TAATTGCAGCAAGATATCTCATATACAT 1292
||||||||||||||||||||||||||||
Sbjct 1259 TAATTGCAGCAAGATATCTCATATACAT 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5