BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14100.1
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488242 jgi|Araly1|488242|fgenesh2_kg.6__1376__AT5G14100.1 1504 0.0
> Ahg488242 jgi|Araly1|488242|fgenesh2_kg.6__1376__AT5G14100.1
Length=950
Score = 1504 bits (814), Expect = 0.0
Identities = 907/951 (95%), Gaps = 9/951 (1%)
Strand=Plus/Plus
Query 212 ATGGCAGTGTCGACGTTTTCGAGCCCCACGCCTGTCTTCGGCATCGCTGAACCACCAGCA 271
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGCAGTGTCGACGTTTTCGAGCCCCACGCCTGTCTCCGGCATCGCTGAACCACCAGCA 60
Query 272 TCATTCTCCTCCACTGCAATTGGCTGGAAGCAACCGTTGAGATTTCGGAGGACGAAGAAG 331
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCATTCTCCTCCGCCGCAATTGGCTGGAAGCAACCGTTGAGATTTCGGAGGACGAAGAAG 120
Query 332 CCTCGAGTAATCTCTTGCGATTATTCTTGCATCGAGGTTAGAGATGTCTGCTACCGTCCT 391
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CCTCGAGTAATCTCTTGCGATTATTCTTGCATCGAGGTTAGGGATGTCTGCTACCGTCCT 180
Query 392 CCTGGAACACAGTTGAATATCTTGAATGGAGTTAATTTTTCCCTGCGC-GAGAAAAGCTT 450
||||||||||| |||||||||||||||| |||||||||||||||| | |||| ||||||
Sbjct 181 CCTGGAACACAATTGAATATCTTGAATGCTGTTAATTTTTCCCTGC-CTGAGAGAAGCTT 239
Query 451 TGGCTTGATCTTTGGGAAGAGTGGGAGTGGTAAAACTACCCTTTTGCAGCTTCTTGCTGG 510
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGGCTTGATTTTTGGCAAGAGTGGGAGTGGTAAAACTACCCTTTTGCAGCTTCTTGCTGG 299
Query 511 GCTAAACAAACCAACATCAGGTTCCATTTGTATCCAAGGATATGGGGATGATGGCCAGCC 570
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 GCTAAACAAACCAACATCAGGTTCCATTTGTATCCAAAGATATGGGGATGATGGCCAGCC 359
Query 571 GAAGGCGGATCCTGACTTGCTTCCCACTGAAAAGGTGGGCATTGTTTTCCAGTTTCCAGA 630
||||||| |||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 360 TAAGGCGGTTCCTGAGTTGCTGCCCACTGAAAAAGTGGGCATTGTTTTCCAGTTTCCAGA 419
Query 631 AAGATTCTTTGTTGCAGATAATGTGCTTGATGAGATTACTTTTGGTTGGCCAAGGCAAAA 690
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 GAGATTCTTTGTTGCAGATAATGTGCTTGATGAAATTACTTTTGGTTGGCCAAGGCAAAA 479
Query 691 AGGTAGTTTGCAGCTTAAGGAGCAACTGACTTCGAATCTCCAGAGAGCATTTAATTGGGT 750
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 AGGTAGTTTGCAGCTTAAGGAGCAACTGACTTCGAATCTCCAGAGAGCATTCAATTGGGT 539
Query 751 TGGATTAGACAGCATCCCACTTGATAAAGATCCCCAGTTACTAAGTGGAGGCTACAAACG 810
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 TGGATTAGACAGCATCCCACTTGATAAAGATCCTCAGTTACTAAGTGGAGGCTACAAACG 599
Query 811 TCGGCTTGCACTAGCTATCCAATTGGTGCAAACTCCAGATTTACTGATACTGGATGAGCC 870
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCGACTTGCACTAGCTATTCAATTGGTGCAAACTCCAGATTTACTGATACTGGATGAGCC 659
Query 871 CCTTGCTGGTCTTGACTGGAAAGCACGTGCAGATGTTGCAAAGCTCTTGAAGCACCTTAA 930
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCTCGCTGGTCTTGATTGGAAAGCACGTGCAGATGTTGCAAAGCTCTTGAAGCACCTTAA 719
Query 931 GAAGGAACTGACTTTACTTGTTGTAAGTCATGATCTAAGAGAGTTAGCAGCCTTGGTTGA 990
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 720 GAAGGAACTGACTTTACTTGTTGTAAGTCATGACCTAAGAGAGTTGGCGGCCTTGGTTGA 779
Query 991 CCAATCATGGAGGATGGAAACAGGTGGTGTTCTTGTTGCAGAACGTCCACCACTTTAGTT 1050
||| |||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||
Sbjct 780 CCAGTCATGGAGGATGGAAACAGGGGGTGTTCTTCTTGCAGAACGTCCACCACGTTAGTT 839
Query 1051 CAATGTTCACTATTACGGAAGGTCCATACCAGGTTTGGCTCGGATGTTATTGATTTTT-- 1108
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CAATGTTCACTATTGCGGAAGGTCCATACCAGGTTTGGCTCGGATGTTATTGATTTTTTC 899
Query 1109 G--T-TTA--GCTAAAAAGTGATACAGGCTTTTACCCTGGCTTAGGTTTTT 1154
| | || || |||||||||||||||||||||||||||| |||||||||
Sbjct 900 GAGTATTGTTGCAAAAAAGTGATACAGGCTTTTACCCTGGCATAGGTTTTT 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49216685847
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5