BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G14105.1

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488243 jgi|Araly1|488243|fgenesh2_kg.6__1377__AT5G14105.1         601    2e-171


> Ahg488243 jgi|Araly1|488243|fgenesh2_kg.6__1377__AT5G14105.1
Length=470

 Score =  601 bits (325),  Expect = 2e-171
 Identities = 443/495 (89%), Gaps = 27/495 (5%)
 Strand=Plus/Plus

Query  1    ACGCACGATGAACGAATCATGAGCTTTAGCTGCTTCTCCAAGTaaaaaaaaaaaaCATAA  60
            |||||||||||||||||||| ||| || |||||||||||||||    |||||| ||||||
Sbjct  1    ACGCACGATGAACGAATCAT-AGCCTTGGCTGCTTCTCCAAGT----AAAAAACACATAA  55

Query  61   GCCCTCTTTAAATCCCTAGCT-AGCTTCCACCGAGAAGTTGTTCAATCTGGGAAAAATCA  119
            ||||||||||||||||||||| ||||||||||||||||| |||||||||  |        
Sbjct  56   GCCCTCTTTAAATCCCTAGCTAAGCTTCCACCGAGAAGTAGTTCAATCT--G--------  105

Query  120  AAATCTGCTATTACGGATCTTTAATCGGAA-AATGGGTTTGACGAATTTCATATTGACGG  178
              |  |  | || |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct  106  --A--T--T-TTGCGGATCGTTAATCGGAACAATGGGTTTGACGAATTTCATATTGACGG  158

Query  179  TGGCCGGAGTAGGCGCCGTGGTGATGCTACTGAGGAGCGACGTGAAGCAATCTGTGACCG  238
            | |||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||
Sbjct  159  TAGCCGGAGTAGGCGCTGTGGTGATGCTATTGAGGAGCGACGTGAAGCAATCTGTCACCG  218

Query  239  TCCTCAGGCGTAACGTCAAGCACATCCGCCACTGGCTCGAAGAAGAATCCTCCGCCGCCT  298
            || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  219  TCTTAAGGCGTAACGTCAAGCACATCCGCCACTGGCTCGAAGAAGAATCCTCCGCCGCCT  278

Query  299  CTTCCAAGGCAGCTGAGTCCATAAAACCAAAGGAAATAGAGGTAAAGGTTCCGAAGAAGG  358
            | ||||||||||| |||||||||||||||||||||||||||   ||||||||||||||||
Sbjct  279  CCTCCAAGGCAGCGGAGTCCATAAAACCAAAGGAAATAGAGACGAAGGTTCCGAAGAAGG  338

Query  359  ACATTCCAAAAGAGAAGGATTAGTGTGTTTCTATGTATACACGAAGAAGGGTCTTTGTAA  418
            ||||||||||||||||||||||||||   ||||| |||||||   ||||||||||||| |
Sbjct  339  ACATTCCAAAAGAGAAGGATTAGTGTCCCTCTATATATACAC---GAAGGGTCTTTGTTA  395

Query  419  GAGTCGGATTTATGACTTTGGTTTCAACACTTAACTATTTTTAGCTGAGAGTTTTGGTTA  478
            |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  396  GAGTCGAATATATGACTTTGGTTTCAACACTTAACTATTTTTAGCTGAGAGTTTTGGTTT  455

Query  479  TATGTTTAAAGGGTT  493
            |||||||||||||||
Sbjct  456  TATGTTTAAAGGGTT  470



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21061885128


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5