BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G14110.1

Length=577
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg940881 jgi|Araly1|940881|scaffold_601425.1                        361    4e-99


> Ahg940881 jgi|Araly1|940881|scaffold_601425.1
Length=253

 Score =  361 bits (195),  Expect = 4e-99
 Identities = 225/240 (94%), Gaps = 0/240 (0%)
 Strand=Plus/Plus

Query  198  TATATTGAAATGGTGTTGAATTGGGGACCAGTCTTAATGTCGGTATTTCTGTTCATCGTA  257
            ||||||| ||||| ||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct  12   TATATTGGAATGGGGTTGAATTGGGGACCAGTCTTAATGTCGGTGGTTCTGTTCATCGTA  71

Query  258  TTGACGCCTGGAGTATTGTTTCAGCTTCCAGGGAAGACCAAAGTGGTTGAGTTTGGCGGC  317
            |||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| 
Sbjct  72   TTGACGCCCGGAGTATTGTTTCAGTTTCCGGGGAAGACCAAAGTGGTTGAGTTTGGCGGT  131

Query  318  TTTCAAACAAGCGGCGCAGCCATTGTCATCCACACTCTTATCTTCTTTGCGTGCATTACA  377
            ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  132  TTTCAGACAGGCGGCGCAGCCATTGTCATCCACACCCTTATCTTCTTTGCGTGCATTACA  191

Query  378  GTCTCTATTATCGCTCTTCATATCCACATCTATGTTGCCTAATTAATTTAACATTTTATT  437
            |||||  ||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  192  GTCTCCCTTATCGCTCTTCATATCCACATCTACGTTGCCTAATTAATTTAACATTTAATT  251



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21100040717


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5