BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14130.1
Length=1190
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893317 jgi|Araly1|893317|Al_scaffold_0006_1313 1369 0.0
> Ahg893317 jgi|Araly1|893317|Al_scaffold_0006_1313
Length=993
Score = 1369 bits (741), Expect = 0.0
Identities = 917/1001 (92%), Gaps = 16/1001 (2%)
Strand=Plus/Plus
Query 40 ATGGATATTCGTAGTGATGATGCaaaaaaaCCTATGATGATGTGGTTCTT-AGGGATGCT 98
||||||| |||||| |||||||||| |||||| |||| ||||||||| || ||||||||
Sbjct 1 ATGGATACTCGTAGGGATGATGCAACAAAACCCATGACGATGTGGTT-TTCGGGGATGCT 59
Query 99 GTTGTTTTCCATGGTGGCCGAGTCAAATGCTCAACTGTCAGAGAATTACTACGCCTCGAC 158
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 GTTGTTTTCCATGGTGGCCGAGTCAAATGCCCAACTGTCAGAGAATTACTACGCCTCGAC 119
Query 159 ATGTCCTAGCGTAGAGCTCATCGTTAAGCAGGCGGTTACTACAAAATTCAAACAAACTGT 218
||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TTGTCCTAACGTCGAGCTCATCGTTAAGCAGGCGGTTACTACAAAATTCCAACAAACT-C 178
Query 219 C-ACAACGGCTCCTGCAACGTTGCGGATGTTCTTTCACGACTGCTTCGTCGAGGGATGTG 277
| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 179 CTACGACGGCTCCGGCAACGTTACGGATGTTCTTTCACGACTGCTTCGTCGAGGGATGTG 238
Query 278 ATGCGTCTGTGTTTATAGCATCTGAGAATGAAGACGCAGAGAAAGACGCAGATG-ACAAT 336
||||||||||||||||||||||||| ||||||||||||||||||||||| | | |||||
Sbjct 239 ATGCGTCTGTGTTTATAGCATCTGACAATGAAGACGCAGAGAAAGACGC-GCCGGACAAT 297
Query 337 AAATCTCTCGCCGGAGACGGATTTGACACCGTGATTAAAGCTAAAACCGCTGTAGAATCT 396
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 298 AAATCTCTCCCCGGAGACGGATTTGACACTGTGATTAAAGCTAAAACCGCTGTAGAATCT 357
Query 397 CAATGTCCCGGAGTTGTGTCATGTGCCGATATACTAGCTCTCGCCGCTAGAGACGTCGTC 456
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 358 CAATGTCCCGGCGTTGTGTCATGTGCCGATATACTAGCTCTCGCCGCAAGAGACGTTGTC 417
Query 457 GTGC-TCGTTGGAGGGCCAGAGTTTAAGGTGGAGCTAGGGAGACGAGACGGGCTCGTGTC 515
|| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 418 GT-CATCGTTGGAGGGCCAGAGTTTAAGGTGGAGCTAGGTAGACGAGACGGGCTCGTGTC 476
Query 516 GAAAGCGTCTAGAGTGACCGGCAAGTTACCTGAACCAGGGCTTGACGTGAGAGGTCTAGT 575
| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 GCAAGCATCTAGAGTGACCGGGAAGTTACCTGAACCAGGGCTTGACGTGAGAGGTCTAGT 536
Query 576 CCAGATCTTCGCTAGTAACGGGCTTTCATTGACCGACATGATCGCTCTTTCAGGCGCACA 635
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 537 CCAGATCTTTGCTAGTAACGGGCTTTCATTGACCGACATGGTCGCTCTTTCAGGCGCACA 596
Query 636 TACAATTGGATCCTCTCACTGCAACCGTTTCGCCAACCGTCTCCACAATTTCTCGACGTT 695
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 597 TACCATTGGATCCTCTCACTGCAACCGTTTCGCCAACCGTCTCCACAACTTCTCGACGTT 656
Query 696 CATGCCAGTGGACCCTACGATGGACCCGGTCTACGCTCAGCAGCTGATACAAGCCTGCTC 755
| |||| ||||||||||||| ||||||| |||||| |||||||||| | ||| ||||||
Sbjct 657 CCTGCCCTTGGACCCTACGATCGACCCGGCCTACGCACAGCAGCTGACAAAAGACTGCTC 716
Query 756 TGACCCCAACCCAGA-TGCTGTAGTAGACATTG-ACCTAACGTCCAGAGATACCTTCGAC 813
| ||||| | || || | | || || | | || ||| ||| ||| |||||||||||||
Sbjct 717 TAACCCCGATCCTGACTTC-GTCGT-GCCCCTGGACCCAACCACCACAGATACCTTCGAC 774
Query 814 AATAGCTACTACCAGAACCTCGTGGCTCGGAA-AGGACTTTTCACCTCCGATCAAGCTCT 872
|||||||| | ||||||||| |||||||| || ||| ||| |||||||||||||||||||
Sbjct 775 AATAGCTATTTCCAGAACCTAGTGGCTCG-AAGAGGCCTTCTCACCTCCGATCAAGCTCT 833
Query 873 GTTTAACGATCTCTCGTCTCAGGCTACGGTGGTCAGGTTTGCTAACAACGCTGAAGAATT 932
|||||||||||||||||||||| | |||||| | ||||||||||||||||| ||||||||
Sbjct 834 GTTTAACGATCTCTCGTCTCAGTCCACGGTGATGAGGTTTGCTAACAACGCCGAAGAATT 893
Query 933 CTACAGCGCTTTTAGCTCTGCTATGAGGAATCTTGGCCGCGTTGGGGTTAAGGTTGGGAA 992
|||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 894 CTACGGTGCTTTTAGCTCTGCTATGAGGAATCTTGGCCGCGTTGGTGTTAAGGTTGGGAG 953
Query 993 TC-AAGGCGAGATTCGAAGGGACTGCTCTGCTTTTAACTAG 1032
| |||| |||||||||||||||||||||||||||||||||
Sbjct 954 -CGAAGGAGAGATTCGAAGGGACTGCTCTGCTTTTAACTAG 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44413198305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5