BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14140.1
Length=1028
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940884 jgi|Araly1|940884|scaffold_601428.1 1251 0.0
> Ahg940884 jgi|Araly1|940884|scaffold_601428.1
Length=835
Score = 1251 bits (677), Expect = 0.0
Identities = 773/820 (94%), Gaps = 4/820 (0%)
Strand=Plus/Plus
Query 58 TGCTCAG-TGCCGGAAGCGATGGCTACGGGTATGGCGGTAGATACGGTAGGCGAGTTAGG 116
||||||| | ||||| |||||||||| ||||||||| ||||| |||||||||||||||||
Sbjct 3 TGCTCAGCT-CCGGAGGCGATGGCTATGGGTATGGCAGTAGACACGGTAGGCGAGTTAGG 61
Query 117 CTTTCCGTACTGGAACCCAATCCGACGAAGATTTCCTCCGGATTCGCCGTTCTTTGCATC 176
||||||||| ||||| |||||||||||||||||| |||| |||||||| |||||||||||
Sbjct 62 CTTTCCGTATTGGAATCCAATCCGACGAAGATTTTCTCCCGATTCGCCTTTCTTTGCATC 121
Query 177 TGGAAATGTCGAGCGCGAGCTACTTGCTAAACAGGTGACATTGGACTTCACAGAAGATGA 236
||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 122 TGGAAATGTCGAGCGAGAGCTACTTGCTAAACAGGTGGCATTGGACTTAACAGAAGATGA 181
Query 237 AATCAACCATCTGCATAAATTTGTGGAAATTGAAACCAGAAGAATCTCGTGTCCCATTGT 296
||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 182 AATCAACCATCTGCAGAAATTTGTGGAAACTGAAAGCAGAAGAATCTCGTGTCCCATTGT 241
Query 297 TGGCTGTCCTGAACGCCTGAAATCTTTGGACCATTTTGAAGATCACTATAATGCACGGCA 356
|||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 242 TGGCTGCCCTGTGCGCCTGAAATCTTTGGACCATTTTGAAGATCACTATAACGCACGGCA 301
Query 357 CACTGCCTCTTGTTCAGTGTGCTCAAGGGTCTACCCTACTTCTCGCTTACTAAGTATTCA 416
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CACTGCGTCTTGTTCAGTATGCTCAAGGGTCTACCCTACTTCTCGCTTACTAAGTATTCA 361
Query 417 CATATCCGAAGCACACGACTCTTTCTTTCAAGCTAAAGTTTCTCGGGGTTATGACATGTA 476
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 362 TATATCCGAAGCACATGACTCTTTCTTTCAAGCTAAAGTTGCTCGGGGTTATGACATGTA 421
Query 477 TGAGTGCCTTGTGGAAGGGTGTGGATTGAAGTTCAAGACCTACAAAGCCCGGCATCGACA 536
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 422 CGAGTGCCTCGTGGAAGGGTGTGGATTGAAGTTCAAGAGCTACAAAGCCCGGCATCGACA 481
Query 537 CTTGATTGACAAACACAAGTTCCCAACGACATTTGAATTCTTCAAGAAGACCCAACTCTC 596
||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 482 CTTAATTGACAAACACAAGTTCCCATCGACATTTGAGTTCTTCAAGAAGACCCAACTCTC 541
Query 597 AAAGAAGCGTAGAGAGAAACTTCAAAGGCAACATGTATCAAAGCTGAAACATGAAGAAGA 656
|||||| || ||||||||||||||||||||||||||| ||| ||||||||||||||| ||
Sbjct 542 AAAGAAACGAAGAGAGAAACTTCAAAGGCAACATGTACCAAGGCTGAAACATGAAGATGA 601
Query 657 CAAAGAAGCTGCTTCGTCAGATGCCATGGAAGTAGAAGACAAAGGCAGCTTAGACGGTCT 716
||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 602 CAAAGAAGCTGCTTCGTCAGATGCCATGGAAGTGGAAGACAAATCCAGCGTAGACGGTCT 661
Query 717 TGTTTCAGCACTGTCCTCGCTAACTACCTCAGACACAACTCCTTCGAATGTCAGCTTCGG 776
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TGTTTCAGCACTGTCCACGCTAACTACCTCAGACACAACTCCTTCGAATGTCAGCTTCGG 721
Query 777 TCGACGCCATGGTCGTGGGCTGACCTTTGTTCCACGGTCTGTTCATAGAG-AGAAACGGA 835
|||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct 722 TCGACGCCATGGTCGTGGGCTGACCTTTGTCCCACGGTCTGTTCATA-AGGAGAAACGGA 780
Query 836 CCGAATCTTCGTCTGCACCAGGACCAACTAATTAGTCATG 875
|||||||||||||||||||||| ||||| |||||||||||
Sbjct 781 CCGAATCTTCGTCTGCACCAGGGCCAACGAATTAGTCATG 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38237285751
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5