BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14150.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488247 jgi|Araly1|488247|fgenesh2_kg.6__1381__AT5G14150.1 2193 0.0
> Ahg488247 jgi|Araly1|488247|fgenesh2_kg.6__1381__AT5G14150.1
Length=1387
Score = 2193 bits (1187), Expect = 0.0
Identities = 1327/1393 (95%), Gaps = 16/1393 (1%)
Strand=Plus/Plus
Query 34 ACCTTTTGTTTCCTGAAATGTACAAACACTAGAACCAGATCCAAAAAGACACAGTTCTAC 93
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1 ACCTTTTGTTTCCTGAAATGTACTAACACTAGAACCAGATCCAAAACGACACAGTTCTAC 60
Query 94 --TA---T-A-T-GGATGATGGCCCTGGCTTCTTCAAACCATCTGTGTGTTTAGTCTTCT 145
|| | | | ||||||||||| ||| ||||||||| ||||||||||||||||| |
Sbjct 61 TTTATCTTAAGTGGGATGATGGCCTTGG---CTTCAAACCCTCTGTGTGTTTAGTCTTGT 117
Query 146 CATTTGTGCACAACTCAAAGACAAGTCCACTAAGTTTGAAGCAAAATGGCGATATGGTTT 205
|| |||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 118 CAATTGTGCACAACTAAAAGACAAGTCCACAAAGTCTGAAGCAAAATGGCGATATGGTTT 177
Query 206 CAGAGAATTTTCCTGTTGCTTCTCGTTTCCTGTTGCGCCTCTTCAGATTTTTTGGAAAAT 265
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 178 CAGAGAGTTTTCCTGTTGCTTCTCGTTTCCTGTTGCGCCTCTTCAGATTTTCTGGAAAAT 237
Query 266 CCAGACTTCGAATCTCCACCGTTAAACTT-ACCTACAAACTCAAATGCTAGCTCTGTATC 324
|||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| ||
Sbjct 238 CCAGACTTTGAATCTCCACCGTTAAACTTGA-CTACAAACTCAAATGCTAGCTCTGTGTC 296
Query 325 GCTGGATCAGAACAGTACACTCCCGGGATGGACATTCCAAGGGACAGTGCTTTATGTTGA 384
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 297 GCTGGATCAGAACAGTACACTCCCTGGATGGACATTCCAAGGGACAGTGCTTTATGTTGA 356
Query 385 ACTGCCTGATACCGGACACGCGGTTCAGCTCGGTGAAGATGGCAAGATCAATCAAACATT 444
| |||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 357 ATTGCCTGATACCGGACATGCCGTTCAGCTCAGTGAAGATGGCAAGATCAATCAAACATT 416
Query 445 CATTGCCAAAGGTGATGAATTGAACTACATCCTCACATTCGCACTGATCCACGCAGGCCA 504
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 417 CATTGCCAAAGGTGATGATTTGAACTACATCCTCACATTCGCATTGATCCACGCAGGCCA 476
Query 505 GAACTGTACAAGCTCTGCTGGTCTCAGTGTCTCGGGGCCAGACAGCAATGCGGTCTTTTC 564
|||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 477 AAACTGTTCAAGCTCTGCTGGTCTCAGTGTCTCGGGGCCAGACAGTAATGCGGTTTTTTC 536
Query 565 TTA-CAGACAAAACTACAGTAAGGTTTCATGGCAGAGCTACAGTCATAACTTGGGTAGTT 623
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTATC-GACAAAACTACAGTAAGGTTTCATGGCAGAGCTACAGTCATAACTTGGGTAGTT 595
Query 624 GGGGGAATGGTGAGCCTATTAACTTAGTTCTTGAAAGTCAGGCAATAGATTCTGATTCTG 683
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GGGGGAATGGTCAGCCTATTAACTTAGTTCTTGAAAGTCAGGCAATAGATTCTGATTCTG 655
Query 684 ATACAAACTCCACATGTTGGCCTATCATTGACACATTGCTTATCAAGACTGTTGGTGTAA 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 ATACAAACTCCACATGTTGGCCTATCATTGACACATTGCTTATCAAGACTGTTGGTGTAA 715
Query 744 CATTGGTCCAAGACAGTGGTAACCTCTTAATCAATGGTGGATTTGAGTCTGGACCTGGTT 803
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 716 CATTGGTTCAAGACAGTGGTAACCTCTTAATCAATGGTGGATTTGAATCTGGACCGGGTT 775
Query 804 TCTTGCCCAACTCAACCGATGGAGTTCTGATTGACGCGGTTCCAAGCCTGATTCAATCAC 863
| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 776 TTTTGCCCAACTCAACCGATGGAGTTCTGATTGATGCGGTGCCAAGCCTGATCCAATCAC 835
Query 864 CATTAAGGCAGTGGTCTGTCATAGGAACAGTCAGATACATAGACTCGGAGCACTTCCATG 923
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CATTAAGGCAGTGGTCTGTTATAGGAACAGTCAGATACATAGACTCGGAGCACTTCCATG 895
Query 924 TCCCAGAAGGCAAAGCTGCAATAGAAATTCTGTCTAACACAGCTCCATCTGGCATACAGA 983
|||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 896 TCCCAGAAGGAAAAGCTGCTATAGAAATTCTGTCTTACACAGCTCCATCTGGCATACAGA 955
Query 984 CAGCAACAAAAGGCACAAGTGAAGGTTCAAGATACAACCTCACATTTACCTTAGGCGATG 1043
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 956 CAGCAACAAAAGGCACAAGTGAAGGTTCAAGATACAACCTCACATTTACCTTGGGAGATG 1015
Query 1044 CTAACGATGCGTGCAGAGGACATTTCGTGGTGGGTGCTCAAGCTGGCTCCGTAACTCAAA 1103
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1016 CTAACGATGCGTGCAGAGGACATTTCGTGGTGGGTGTTCAAGCTGGCTCCGCAACTCAAA 1075
Query 1104 ACTTCACATTGGAGAGTAATGGGACTGGCTCTGGTGAGAAGTTTGGGTTAGTGTTTGAAG 1163
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 ACTTCACATTGGAGAGCAATGGGACTGGCTCTGGTGAGAAGTTTGGGTTAGTGTTTGAAG 1135
Query 1164 CAGACAAAGATGCAGCACAGATAAGTTTCACCAGCTACTCAGTTACAATGACAAAAGAGA 1223
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1136 CAGACAAAGATGCAGCACAGATAAGTTTCACCAGCTACTCAGCTACAATGACAAAAGAGG 1195
Query 1224 ATGTTGTTTGTGGTCCTGTGATTGATGAAGTGATGGTACATCCTCTTGGTGGAACAGCCT 1283
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1196 ATGTTGTTTGTGGTCCTGTGGTTGATGAAGTGATTGTACATCCTCTTGGTGGAACAGCCT 1255
Query 1284 CAGTAAAACCCACTTGGCTGCTACTTATTTTCGCTTTGTTGTATGTTGCAGTTCTCTGAT 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1256 CAGTAAAACCCACTTGGCTGCTACTTATTTTCGCTTTGTTGTATGTTGCAGTTCTCTAAT 1315
Query 1344 TGAAACTGTTTGGGAGAGAGGTCATAAAGAAGATATTTTTGCAAGGAGATGTGATAATCA 1403
|||| |||||||| |||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1316 TGAATCTGTTTGG-AGAGAGGTCACAAAGAAGATATTTTTGCAAAGAGATGTGATAATCA 1374
Query 1404 TTCTAGCTTCATG 1416
|||||| ||||||
Sbjct 1375 TTCTAGTTTCATG 1387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5