BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14160.1
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488248 jgi|Araly1|488248|fgenesh2_kg.6__1382__AT5G14160.1 451 4e-126
> Ahg488248 jgi|Araly1|488248|fgenesh2_kg.6__1382__AT5G14160.1
Length=843
Score = 451 bits (244), Expect = 4e-126
Identities = 334/374 (89%), Gaps = 19/374 (5%)
Strand=Plus/Plus
Query 642 CTTTCGCTTCCGCTTGGGATCTTT-TAGC-CCTTAT-GATACAATTT-GGACAGACTATC 697
||||||||||||||||||| ||| | || || || ||| | |||| | |||| |||
Sbjct 483 CTTTCGCTTCCGCTTGGGAAATTTATGGCGCC--ATGGAT-C-ATTTCTGCCAGATTATA 538
Query 698 TTGACTGGAAGACCAACATAGTAATCACCATCTCTGGAGATTTTTTGATGGTTGGCTGCG 757
||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||
Sbjct 539 TTGACTGGAAGACCAACATAGTAATCACCATCTCTGGAGATATTTTGATGGTTGCCAGCG 598
Query 758 TTCTTAAACGTCGTGACCTTTCCTGGCTTTTTCGTGGCGACCAGGCCGTGATCTTGGATC 817
||||||||||| |||||||||| |||| |||| || | ||||||||||||||||
Sbjct 599 TTCTTAAACGTAGTGACCTTTCTTGGC-ATTTC----CG--C--GCCGTGATCTTGGATC 649
Query 818 TAGGTATCACCGTGCAAGCATCCTCCGATATCCAAGGTATTACCAGAAACTCCACCTATT 877
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 650 TAGGTATCACCGTGCAAGCATCCTCCGATATCCAAGGAATTACCAGAAACTCCATCTATT 709
Query 878 TCAGCGGTCTTCCATCTAGCCAAAAGGATGTCTTCGTCTTCAATCTCTCCTCCCAGAAGG 937
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TCAGCGGCCTTCAATCTAGCCAAAAGGATGTCTTCGTCTTCAATCTCTCCTCCCAGAAGA 769
Query 938 TTCAACGCCTTTC-GTCTTCTTCTATCTCCTCCAGACCATTCTCTAATGCTCGCTGGCTC 996
|||||||| |||| | |||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 770 TTCAACGCTTTTCAG-CTTCTTCTATTTCCTCCAGACCATTCTTTAATGCTCGCTGGCTC 828
Query 997 TTCCCCACTTCTTA 1010
||||||||||||||
Sbjct 829 TTCCCCACTTCTTA 842
Score = 429 bits (232), Expect = 2e-119
Identities = 271/289 (94%), Gaps = 5/289 (2%)
Strand=Plus/Plus
Query 38 GGGGG-GTGGATTGGTCGGAGCTTCCTGAGGATGTGATCAGATTGGTTCTGCGACGGCTG 96
||||| | ||||||||| ||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 9 GGGGGAG-GGATTGGTC-GAGCTTCCTGAGGATTTGATCAGATTGGTTCTGGGACGGCTG 66
Query 97 AGACTCTCGGATTTTCATCGAGCTAGGGCGGTTTGTTCCACTTGGTGTAGGGTTTGGGGA 156
|| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 67 AGGTTCTCGGATTTTCATCGAGCTAGGGCGGTTTGTTCCGCTTGGTATAGGGTTTGGGGA 126
Query 157 GACTGTGTCTCC-AAACCTAATCAGGTTCCGTGGCTAATTCTTTTCCCTGATCCAGCACA 215
|| ||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 127 GAATGTGT-TCCCAAACCTAATCAGGTTCCGTGGCTGATTCTATTCCCTGATCCAGCACA 185
Query 216 AATCAGACGCAGTTGCATGTTGTACAATCCACAGGAAGAAGAAAACGTTTACACAATTCA 275
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 186 AACCAGACGCAGTTGCATGTTGTACAATCCGCAGGAAGAAGAAAACGTTTACACAATTCA 245
Query 276 AGACCTTGGTGTGGATCCTTGCCTTGCAAGTTGCGGCACCTGGCTCCTC 324
||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 246 AGATCTTGGTGTGGATCCTTGCCTGGCAAGTTGCGGCACCTGGCTCCTC 294
Score = 237 bits (128), Expect = 1e-61
Identities = 154/166 (93%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 366 CAAAGCCGAGATGA-TGGGATACCCTAG-TACTGATAAGGCAGTTGTGTGGATAGACGAG 423
|||||||||||||| |||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 297 CAAAGCCGAGATGATTGGG-TACCCT-GCTACTGATAAGGCAGTTGTGTGGATAGACGAG 354
Query 424 AAAACTAAAGACTACGTAGTTGCTTGCAGCTGGGGTGGAGACAAGCATGCAGCCTTTTGC 483
|||||||||||||||||||||||||| || ||||||| | ||| |||| | |||||||||
Sbjct 355 AAAACTAAAGACTACGTAGTTGCTTGTAGTTGGGGTGCACACAGGCATACGGCCTTTTGC 414
Query 484 AAGAAAGGCGATTGTGAATGGCGCCAGATTCCTCCTTTGTTGGGGT 529
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 415 AAGAAAGGAGATTGTGAATGGCGCCAGATTCCTCCTTTGTTGGGGT 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39419096178
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5