BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14170.1
Length=1886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488249 jgi|Araly1|488249|fgenesh2_kg.6__1383__AT5G14170.1 3024 0.0
> Ahg488249 jgi|Araly1|488249|fgenesh2_kg.6__1383__AT5G14170.1
Length=1798
Score = 3024 bits (1637), Expect = 0.0
Identities = 1748/1802 (97%), Gaps = 5/1802 (0%)
Strand=Plus/Plus
Query 72 CAGGCTGATAGGTTTATATAGCAATGTCTGGTAACAACAACAATCCACAAAAGCCTCAAG 131
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 CAGGCTGATAGGTTTATATAGCAATGTCGGGTAACAACAACAATCCACAAAAGCCTCAAG 60
Query 132 GCTCTGCGCCTTTGCCTTTTGGGAATCCTGGGATGGCCTCTGCATCTGTTCCTGGAAACC 191
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTCTGCGCCTTCGCCTTTTGGTAATCCTGGGATGGCCTCTGCATCTGTTCCTGGAAACC 120
Query 192 AAGGTTTTGCTCAGTCTCATATGGCAGCTAACTTTCAAGCTCAGTTTCAGTTCTCTCAAG 251
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 AAGGCTTTGCTCAGTCTCAAATGGCAGCTAACTTTCAAGCTCAGTTTCAGTTCTCACAAG 180
Query 252 CTCAGGCCCTAGCCCATGCTCAAGCACAGTCTAAAGTTCAAGCACAACTGCAAGCTCAGT 311
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCAAGCCCTAGCCCATGCTCAAGCACAGTCTAAAGTTCAAGCACAACTGCAAGCTCAGT 240
Query 312 TACAAGCTCAAGGCATGACGATGAACCAAGCACAAGGTTCTCCGGGGATTGGTGGCTTGG 371
||||||||||||||||||||||||| |||||||||||||| || ||||||| ||| ||||
Sbjct 241 TACAAGCTCAAGGCATGACGATGAATCAAGCACAAGGTTCCCCTGGGATTGCTGGGTTGG 300
Query 372 GTCCTTCTTCTCCTTCTTTGACGACTCCTGGAAGTTTAAACATGAAGAGATTCCAGCAGA 431
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 301 GTCCTTCTTCTCCTTCTTTGACGACTCCTGGAAGTTTAAACATGAAGAGGTTTCAGCAGA 360
Query 432 AACCGCCGATGCGACCTCCTGGTGCTCCTGCGAGTAACAACACTATCTCCCCAATGAGAA 491
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 361 AACCGCCGATGCGACCTCCTGGTGCTCCTGCGAGTAACAATACTATCTCCCCCATGAGAA 420
Query 492 CAATGGAGTTAACTCCTGCTGCTCGGAAAAAGAAACAAAAGCTTCCAGAAAAGTCATTGC 551
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 421 CAATGGAGTTAACTCCTGCTGCGCGGAAAAAGAAACAGAAGCTTCCAGAAAAGTCGTTGC 480
Query 552 AGGAGCGGGTGGCTGCAATCTTGCCAGAGTCTGCCTTATACACACAACTTCTGGAGTTTG 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGGAGCGGGTGGCTGCAATCTTGCCAGAGTCTGCCTTATACACACAACTTCTGGAGTTTG 540
Query 612 AGTCTCGGGTTGATGCTGCGTTAACTAGAAAGAAAGTTGACATCCAGGAAGCCCTTAAAA 671
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGTCTCGTGTCGATGCTGCATTAACTAGAAAGAAAGTTGACATCCAGGAAGCCCTTAAAA 600
Query 672 ACCCTCCCTGCATACAGAAGACTCTTAGGATCTACGTTTTCAACTCGTTTGCTAACCAAA 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACCCTCCCTGCATACAGAAGACTCTTAGGATCTACGTTTTCAACTCGTTTGCTAACCAAA 660
Query 732 ACAACACGATCCCTGGGAATCCTAATGCTGACCCGCCAACATGGACTCTTAAAATTATTG 791
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 661 ACAACACGATCCCTGGGAATCCTAACGCTGACCCGCCAACATGGACTCTTAAAATTATTG 720
Query 792 GTAGGATACTGGAAGATGGGGTGGATCCCGACCAGCCAGGGTTTGTTCAGAAAGCAAACC 851
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 721 GTAGGATCCTGGAAGATGGGGTGGATCCCGACCAGCCAGGATTTGTTCAGAAAGCAAACC 780
Query 852 CATTGCATCCCAAATTCTCGTCTTTCTTCAAAAGGGTTACAGTTTCCCTGGATCAGAGGC 911
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CATTGCATCCCAAATTCTCATCTTTCTTCAAAAGGGTTACAGTTTCCCTGGATCAGAGGC 840
Query 912 TGTATCCTGAGAACCCATTGATCATATGGGAGAATGCTCGATCACCTGCTCCTCAGGAAG 971
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGTACCCTGAGAACCCATTGATCATATGGGAGAATGCTCGATCACCTGCTCCTCAGGAAG 900
Query 972 GCTTTGAGATAAAGAGGAAAGGGAATCAGGAGTTTGCTGCTAGTATACGGTTGGAGATGA 1031
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 901 GGTTTGAGATAAAGAGGAAAGGGAATCAGGAGTTTGCAGCTAGTATACGGTTGGAGATGA 960
Query 1032 ACTACGTCCCTGAAAAGTTCAAGCTTTCTACTGCATTGATGGATGTTCTCGGGATTGAGG 1091
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 961 ACTACGTCCCTGAAAAGTTTAAGCTTTCTACTGCATTGATGGATGTTCTTGGGATTGAGG 1020
Query 1092 TTGAAACCCGCCCAAGAATCATCGCTGCAATTTGGCATTACGTTAAGGCGAGGAAACTGC 1151
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1021 TTGAAACCCGCCCAAGAATCATCGCTGCAATTTGGCATTACGTTAAGGCGAGGAAATTGC 1080
Query 1152 AGAACCCAAATGACCCCTCTTTCTTCAACTGTGATGCTGCACTTCAGAAAGTTTTTGGAG 1211
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1081 AGAACCCAAATGACCCCTCTTTCTTCAACTGTGATGCTGCACTTCAGAAAGTTTTTGGGG 1140
Query 1212 AAGAAAAGTTGAAATTCACTATGGTCTCTCAGAAAATATCTCATCACTTGTCGCCTCCAC 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAGAAAAGTTGAAATTCACTATGGTCTCTCAGAAAATATCTCATCACTTGTCGCCTCCAC 1200
Query 1272 CACCTATTCACTTAGAACACAAAATCAAGCTCTCAGGAAATAATCCGGCCGTATCAGCAT 1331
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1201 CACCTATTCACTTGGAACACAAAATCAAGCTCTCAGGAAATAATCCGGCCGTATCGGCAT 1260
Query 1332 GTTACGATGTGCTAGTGGATGTACCCTTCCCGATCCAAAGAGATCTGAACAATTTGCTAG 1391
| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1261 GCTATGATGTGCTAGTGGACGTACCCTTCCCGATCCAAAGGGATCTGAACAATTTGCTAG 1320
Query 1392 CCAACGCAGAGAAGAACAAAGAGATTGAGGCTTGTGATGAAGCAATATGTGCAGCCATAA 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CCAACGCAGAGAAGAACAAAGAGATTGAGGCTTGTGATGAAGCAATATGTGCAGCCATAA 1380
Query 1452 GGAAAATCCATGAGCATAGGAGGAGGCGGGCATTTTTCTTGGGGTTCAGCCAATCGCCAG 1511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GGAAAATCCATGAGCATAGGAGGAGGCGGGCATTTTTCTTGGGGTTCAGCCAATCGCCAG 1440
Query 1512 TTGAATTCATAAACGCCCTGATCGAATCTCAGAGCAAGGATCTAAAGGTCGTTGCGGGAG 1571
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 1441 TTGAATTCATAAACGCCCTGATCGAATCTCAGAGCAAGGATCTGAAGGTTGTAGCGGGAG 1500
Query 1572 AAGCCAGTCGAAATGCTGAGAGAGAACGTCGATCAGACTTCTTCAACCAACCTTGGGTCG 1631
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1501 AAGCCAGTCGAAATGCTGAGAGGGAACGTCGATCGGACTTCTTCAACCAACCTTGGGTCG 1560
Query 1632 AAGATGCAGTTATACGTTACTTGAACCGGAGGCCAGCAGCTGGGAACGATGGGCCAGGGA 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 AAGATGCAGTTATACGTTACTTGAACCGGAGGCCAGCAGCTGGGAACGATGGGCCAGGGA 1620
Query 1692 GTTGGTGAGTTTCTTGACGATACAAGTCTCTTCATCTGTTTGAGCATTTTTAGTAGAAGA 1751
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1621 GTTGGTGAGTTTCTTGA---TACAAGTCTCTTCATCTGTTTGAGCATTTTTAGAAGAAGA 1677
Query 1752 TATTGTTGAGATTAGTCTGGTTTAAAAGTGAACTAGTGTATCTGTAATCTTGTGTATGTT 1811
|||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1678 TATTGTTGAGATCAGTCTGGTTTAAAAGGGACCTAGTGTATCTGTAATCTTGTGTATGTT 1737
Query 1812 GAAACATTACT-ACTTTATATAATTAGCTTTGTTTTGTAGCCTTTGCGTTAATGGTTAAG 1870
||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1738 GAAACATTA-TGACTTTATATAATTAGCTTTGTTTTGTAGCCTTTGCTTTAATGGTTAAG 1796
Query 1871 TC 1872
||
Sbjct 1797 TC 1798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70847855700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5