BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14180.1
Length=1411
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325890 jgi|Araly1|325890|fgenesh1_pm.C_scaffold_6001110 2002 0.0
> Ahg325890 jgi|Araly1|325890|fgenesh1_pm.C_scaffold_6001110
Length=1260
Score = 2002 bits (1084), Expect = 0.0
Identities = 1205/1263 (95%), Gaps = 9/1263 (1%)
Strand=Plus/Plus
Query 50 ATGGCCGGTTCGGTTATGGTTCCGTCCGTTTCAATCGGTTTAGCCTTATCTGTCTTAATC 109
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1 ATGGCCGGTTCGGTTATGGTTCCGTCCGTTTCAATCGGTTTAGCCTTATGTGTCATAATC 60
Query 110 TTCTTCGCTCTTTCCCTCAAGACCCTTGAAGCTCGTGGAACCTTCGGCAGGCTTGCCGGA 169
||||| |||||| | || ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 61 TTCTTTGCTCTTGCACTTAAGCCCCTCGAAGCTCGTGGAACCTTCGGCAGGCTTGCCGGA 120
Query 170 CAGCCACCGCAGAGGACTGCTGCCGGCGGCATATGCGCTTCTTCTGTTCACATATTTGGT 229
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 121 AAGCCACCGCAGAGGACTGCTTCCGGCGGCATATGTGCTTCTTCTGTTCACATATATGGT 180
Query 230 TACAAGTGCGAAGAACATGATGTGGTGACTCAAGATGGGTACATATTGAATATGCAAAGG 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TACAAGTGCGAAGAACATGATGTGGTGACTCAAGATGGGTACATATTGAATATGCAAAGG 240
Query 290 ATACCGGAAGGACGAGCCGG-AGCC-GTCGCCGGAGATGGGGGAAAGAGACAACCTGTCC 347
||||||||||||||| |||| | || || ||||| ||||| |||||||||||||||||||
Sbjct 241 ATACCGGAAGGACGAACCGGCA-CCGGT-GCCGGTGATGGTGGAAAGAGACAACCTGTCC 298
Query 348 TAATACAACATGGAATTCTTGTCGATGGGATGTCATGGCTGTTGAATCCAGCGGATCAAA 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TAATACAACATGGAATTCTTGTCGATGGGATGTCATGGCTGTTGAATCCAGCGGATCAAA 358
Query 408 ATCTGCCGTTGATTTTGGCGGATCAAGGATTCGATGTGTGGATGGGGAACACAAGAGGGA 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATCTGCCGTTGATTTTGGCGGATCAAGGATTCGATGTGTGGATGGGGAACACAAGAGGGA 418
Query 468 CTAGATTCAGCAGAAGACACAAGTACCTTAACCCTTCTCAACGGGCTTTCTGGAACTGGA 527
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 419 CGAGATTCAGCAGAAGACACAAGTACCTTGACCCTTCTCAACGGGCTTTCTGGAACTGGT 478
Query 528 CGTGGGACGAGCTTGTGAGTTACGATCTGCCTGCTATGTTTGACCATATCCATGGCCTAA 587
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 479 CGTGGGACGAGCTTGTGAGTTACGATCTGCCTGCTATGTTTGACCATATCCACGGCCTAA 538
Query 588 CAGGCCAAAAGATTCACTACCTCGGACACTCTTTGGGGACGTTAATAGGATTTGCTTCGT 647
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 539 CAGGCCAAAAGATCCACTACCTCGGACACTCTTTGGGGACGTTAATAGGATTTGCGTCGT 598
Query 648 TCTCAGAAAAAGGGTTGGTGGATCAAGTGAGATCGGCGGCGATGTTGAGTCCCGTTGCTT 707
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 599 TCTCGGAAAAAGGGTTGGTGGATAAAGTGAGATCGGCGGCGATGTTGAGTCCCGTTGCTT 658
Query 708 ATCTCAGCCACATGACCACCGTCATCGGCGATATCGCCGCAAAAACCTTCCTCGCCGAGG 767
|||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||
Sbjct 659 ATCTCAGCCACATGACCACCGTCATCGGCGATATCGCCGCCAAATCCTTCCTGGCCGAGG 718
Query 768 CCACCTCTATTCTTGGATGGCCAGAGTTTAACCCGAAAAG---TGGATTAGTAGGGG-AT 823
|||| || |||||||||||| ||||||||||||| ||||| |||||||||||||| ||
Sbjct 719 CCACGTCCATTCTTGGATGGGCAGAGTTTAACCCCAAAAGCAGTGGATTAGTAGGGGGAT 778
Query 824 TTTATAAAGGCTATATGCCTTAAAGCGGGGATCGACTGTTATGATTTAGTCTCTGTTATC 883
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 779 TT-ATAAAGGCTATATGCCTTAAAGCGGGGATCGACTGTTATGATTTACTCTCCGTTATC 837
Query 884 ACTGGAAAGAATTGCTGCCTTAACGCATCAACCATTGATCTGTTCCTTGCCAACGAACCT 943
|| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 838 ACCGGAAAGAATTGTTGCCTTAACGCCTCAACCATTGATCTGTTCCTTGCGAACGAACCT 897
Query 944 CAATCTACTTCCACCAAGAACATGATCCACCTTGCTCAAACGGTAAGAGACAAGGAGTTG 1003
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 898 CAATCTACTTCCACCAAGAACATGATCCACCTTGCTCAAACGGTAAGAGTCAAGGAGTTG 957
Query 1004 AGAAAATACAACTATGGAAGCAGTGATCGCAACATAAAACATTACGGTCAAGCGATACCA 1063
|||||||||||||||||||| ||||||| |||||||||| | ||||||||||||||||||
Sbjct 958 AGAAAATACAACTATGGAAGTAGTGATCACAACATAAAATACTACGGTCAAGCGATACCA 1017
Query 1064 CCGGCATACAACATATCGGCGATCCCACACGAGCTTCCGCtttttttCAGCTACGGTGGT 1123
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1018 CCGGCTTACAACATATCGGCGATCCCACACGACCTTCCGCTTTTTTTCAGCTACGGCGGT 1077
Query 1124 TTAGATAGCCTGGCTGATGTGAAAGACGTTGAGTTTCTCCTTGACCAGTTTAAGTATCAC 1183
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1078 TTAGATAGCCTGGCCGATGTGAAAGATGTCGAGTTTCTCCTTGACCAGTTTAAGTATCAC 1137
Query 1184 GACATCGATAAGATGAATGTGCAGTTTGTGAAAGACTATGCTCATGCTGATTTCATCATG 1243
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1138 GACATCGATAAGATGAATGTGCAGTTTGTGAATGACTATGCACATGCTGATTTCATCATG 1197
Query 1244 GGTGTTACTGCCAAAGACGTTGTTTATAACCAAGTTGCTACCTTTTTCAAACGACAAGCT 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GGTGTTACTGCCAAAGACGTTGTTTATAACCAAGTTGCTACCTTTTTCAAACGACAAGCT 1257
Query 1304 TGA 1306
|||
Sbjct 1258 TGA 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52754989325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5