BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14200.1
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488253 jgi|Araly1|488253|fgenesh2_kg.6__1387__AT5G14200.1 2436 0.0
Ahg473708 jgi|Araly1|473708|fgenesh2_kg.1__3662__AT5G14200.1 2073 0.0
Ahg477193 jgi|Araly1|477193|fgenesh2_kg.2__2323__AT1G80560.1 1109 0.0
> Ahg488253 jgi|Araly1|488253|fgenesh2_kg.6__1387__AT5G14200.1
Length=1541
Score = 2436 bits (1319), Expect = 0.0
Identities = 1473/1545 (95%), Gaps = 20/1545 (1%)
Strand=Plus/Plus
Query 10 CCaaaaaaaaTGGCGGCGTTTTTGCAAACGAACATCAGTCTGAATGCGATCAAGATCGTC 69
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 2 CCAAAAAAAATGGCGGCGTTTTTGCAAACGAACATCCGTCTGAATTCGATCAAGATCGTC 61
Query 70 CCGGGGAA-ATACAGTTCTCTCACCGATCATCAGTTTCGTGCGCCGTATCGAATTAGGTG 128
|| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 62 CC-GGGAAGATACAGTGCTCTCACCGATCATCAGTTTCGTGCGCCGTATCGAATAAGGTG 120
Query 129 CGCCGCCGCTTCACCTGGGAAAAAACGGTATAACATCGCTCTGCTTCCCGGAGACGGTAT 188
||| || |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 121 CGCTGCGGCTTCACCAGGGAAAAAACGGTATAATATCGCTCTGCTTCCCGGCGACGGTAT 180
Query 189 CGGTCCAGAAGTTATCTCTGTTGCTAAGAATGTGCTTCAGAAAGCTGGATCTCTCGAAGG 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGTCCAGAAGTTATCTCTGTTGCTAAGAATGTGCTTCAGAAAGCTGGATCTCTCGAAGG 240
Query 249 ACTGGAGTTTGATTTCAAGGAGATGCCTGTCGGAGGAGCAGCCTTGGATTTGGTTGGAGT 308
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 ACTGGAGTTTGATTTCCAGGAGATGCCTGTCGGAGGAGCAGCCTTGGATTTGGTCGGAGT 300
Query 309 TCCATTGCCGGAGGAAACTTTCACGGCTGCAAAACTATCTGATGCCATTCTTCTTGGAGC 368
|||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 TCCAATGCCTGAGGAAACTTTCACGGCTGCAAAACAATCTGATGCCATTCTTCTTGGAGC 360
Query 369 TATTGGAGGGTACAAATGGGACAAGAATGAGAAACATCTGAGACCTGAGATGGCTCTGTT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TATTGGAGGGTACAAATGGGACAAGAATGAGAAACATCTGAGACCTGAGATGGCTCTGTT 420
Query 429 TTACCTTAGAAGAGATCTCAAAGTCTTTGCTAATTTGAGACCTGCTACAGTTTTGCCACA 488
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTACCTTCGAAGAGATCTCAAAGTCTTTGCTAATTTGAGACCTGCTACAGTTTTGCCACA 480
Query 489 GCTAGTTGATGCTTCCACACTGAAGAAAGAAGTAGCAGAAGGTGTTGATATGATGATTGT 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTAGTTGATGCTTCCACACTGAAGAAAGAAGTAGCAGAAGGTGTTGATATGATGATTGT 540
Query 549 TAGGGAGCTCACAGGAGGTATTTACTTTGGAGAGCCAAGAGGCATTACGATCAATGAAAA 608
|||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 541 TAGGGAGCTCACAGGAGGTATTTACTTTGGAGAGCCAAGAGGTATCAAGATCAATGAAAA 600
Query 609 TGGCGAAGAAGTCGGCGTTAGTACAGAGATCTACGCTGCTCACGA-G------A--TTGA 659
|||||||||||||||| |||||||||||||||| ||||||||||| | | ||||
Sbjct 601 TGGCGAAGAAGTCGGCATTAGTACAGAGATCTATGCTGCTCACGAGGTACTAAACCTTGA 660
Query 660 CAGAATTGCTCGTGTAGCATTCGAGACTGCTAGGAAAAGGCGTGGCAAACTTTGTTCTGT 719
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 661 CAGAATTGCTCGTGTTGCATTCGAGACTGCTAGGAAAAGGCGTGGCAAGCTGTGTTCGGT 720
Query 720 TGACAAAGCCAATGTGTTGGATGCATCAATATTGTGGAGGAAAAGAGTAACAGCTTTAGC 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CGACAAAGCCAATGTGTTGGATGCATCAATATTGTGGAGGAAAAGAGTAACAGCTTTAGC 780
Query 780 CTCTGAATATCCAGATGTTGAACTATCACATATGTATGTCGATAATGCTGCAATGCAGCT 839
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTCTGAATATCCTGATGTTGAACTATCACATATGTATGTCGATAATGCTGCAATGCAGCT 840
Query 840 TATTCGTGACCCGAAACAGTTTGACACAATCGTTACCAATAACATTTTTGGTGATATATT 899
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 841 TATCCGTGACCCGAAACAGTTTGACACAATCGTCACCAATAACATTTTCGGTGATATATT 900
Query 900 GTCTGATGAAGCTTCAATGATCACTGGAAGCATTGGAATGCTTCCATCTGCTAGTCTCGG 959
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 901 GTCTGATGAAGCTTCAATGATCACTGGAAGCATTGGAATGCTTCCATCTGCAAGTCTCGG 960
Query 960 TGAATCGGGACCTGGACTCTTTGAACCTATACATGGTTCAGCACCAGATATAGCTGGACA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGAATCGGGACCTGGACTCTTTGAACCTATACATGGTTCAGCACCAGATATAGCTGGACA 1020
Query 1020 AGACAAGGCAAACCCATTGGCCACCATTCTCAGCGCGGCGATGCTTCTGAAGTATGGACT 1079
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AGACAAAGCAAACCCATTGGCCACCATTCTCAGCGCGGCGATGCTTCTGAAGTATGGACT 1080
Query 1080 TGGAGAAGAAAAGGCTGCAAAGAGGATTGAAGACGCTGTCGTGGATGCTCTGAACAAAGG 1139
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1081 TGGAGAAGAAAAGGCTGCAAAGAGGATTGAAGACGCGGTCGTGGATGCTCTGAACAAAGG 1140
Query 1140 GTTCAGAACCGGAGACATCTACTCCCCTGGAAATAAACTGGTGGGATGCAAGGAAATGGG 1199
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1141 GTTCAGAACCGGAGACATCTACTCCCCCGGAAATAAACTGGTGGGATGCAAGGAAATGGG 1200
Query 1200 TGAGGAGGTTCTCAAATCAGTGGAATCCAAAGTTCCAGCTACTGTTTAAGTTTATTGATG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TGAGGAGGTTCTCAAATCAGTGGAATCCAAAGTTCCAGCTACTGTTTAAGTTTATTGATG 1260
Query 1260 ATTTGAAGCACTTGAAAAAGTTTGTGTAGCACTTGGTTTTACGGTCACTTATATGCTAAT 1319
||||||||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||
Sbjct 1261 ATTTGAAGCACTTAAAAAAGT--GTGTAGCCCTTGGTTTTACGGTTACTTATATGCTAAT 1318
Query 1320 CCATGCAACATTGTACCTTTTATAATAAATAAATTATTTGGGATCGATTCTGCAATTCAA 1379
||||| |||||| || ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1319 CCATGTAACATTCTAGCTTCTATAATAAATAAAATATTTGGGATCGATTCTGCAATTCAA 1378
Query 1380 AGACAAGATTCTCCAAAAACATTTGACAGGTCTCCTGCCTTTACTTACCTTGTTC--TT- 1436
||| |||||||||||| || |||||||| ||||||||||| ||||||||||||| ||
Sbjct 1379 AGAGAAGATTCTCCAAGAATATTTGACATGTCTCCTGCCTC-ACTTACCTTGTTCAGTTC 1437
Query 1437 --GAAGATTGAGAATTTCTCTTCAACTACAAGACTCAATATCTTCTTCAATCAATATTTG 1494
|||||||||||| |||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct 1438 TTGAAGATTGAGAAGTTCTCTTCAACTACAA-ACTCAGTATCATCTTCAATCAATATTTG 1496
Query 1495 TTTAACGAAATAAGTTTCAAGAGAAGACAAGCTACTATGATTTTT 1539
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1497 TTTAACGAAATAAGTTTCAAGAGAAGACAAGAAACTATGATTTTT 1541
> Ahg473708 jgi|Araly1|473708|fgenesh2_kg.1__3662__AT5G14200.1
Length=1439
Score = 2073 bits (1122), Expect = 0.0
Identities = 1357/1464 (93%), Gaps = 42/1464 (3%)
Strand=Plus/Plus
Query 19 ATGGCGGCGTTTTTGCAAACGAACATCAGTCTGAATGCGATCAAGATCGTCCCGGGGAA- 77
|||||||||||||||||||| ||||| | |||| || |||||||||||||||| |||||
Sbjct 1 ATGGCGGCGTTTTTGCAAACTAACATGACTCTGGATTCGATCAAGATCGTCCC-GGGAAG 59
Query 78 ATACAGTTCTCTCACCGATCATCAGTTTCGTGCGCCGTATCGAATTAGGTGCGCCGCCGC 137
||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 60 ATACAGTTCTCTCACCG------A---TCGTGCGCCGTATCGAATTAGGTGCGCCGCCGC 110
Query 138 TTCACCTGG-GAAAAAACGGTATAACATCGCTCTGCTTCCCGGAGACGGTATCGGTCCAG 196
|||||| || ||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 111 TTCACC-GGTGAAAAAACGGTATAACATCGCTCTGCTTCCCGGCGATGGTATCGGTCCCG 169
Query 197 AAGTTATCTCTGTTGCTAAGAATGTGCTTCAGAAAGCTGGATCTCTCGAAGGACTGGAGT 256
||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||
Sbjct 170 AAGTTATATCTGTTGCTAAGAATGTGCTTCAGAAAGCTGGGTTTCTCCAAGGACTGGAGT 229
Query 257 TTGATTTCAAGGAGATGCCTGTCGGAGGAGCAGCCTTGGATTTGGTTGGAGTTCCAT-TG 315
|||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| | ||
Sbjct 230 TTGATTTCCAGGAGATGCCTTTCGGAGGAGCAGCCTTGGATTTGGTCGGAGTTCC-TCTG 288
Query 316 CCGGAGGAAACTTTCACGGCTGCAAAACTA-TCTGATGCCATTCTTCTTGGAGCTATTGG 374
||||||||||||| |||||||||||||| | ||||||||| |||||||||||||||| ||
Sbjct 289 CCGGAGGAAACTTCCACGGCTGCAAAAC-AGTCTGATGCCGTTCTTCTTGGAGCTATCGG 347
Query 375 AGGGTACAAATGGGACAAGAATGAGAAACATCTGAGACCTGAGATGGCTCTGTTTTACCT 434
||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 348 AGGGTACAAATGGGACAAGAATGAGAAACATCTGAGACCTGAGATGGGTCTCTTACACCT 407
Query 435 TAGAAGAGATCTCAAAGTCTTTGCTAATTTGAGACCTGCTACAGTTTTGCCACAGCTAGT 494
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 TCGAAGAGATCTCAAAGTCTTTGCTAATTTGAGACCTGCTACAGTTTTGCCACAGCTAGT 467
Query 495 TGATGCTTCCACACTGAAGAAAGAAGTAGCAGAAGGTGTTGATATGATGATTGTTAGGGA 554
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 468 TGATGCTTCCACACTGAAGAAAGAAGTAGCACAAGGTGTTGATATGATGATTGTAAGGGA 527
Query 555 GCTCACAGGAGGTATTTACTTTGGAGAGCCAAGAGGCATTACGATCAATGAAAATGGCGA 614
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 528 GCTCATTGGAGGTATTTACTTTGGAGAGCCAAGAGGCATTACCATCAATGAAAATGGCGA 587
Query 615 AGAAGTCGGCGTTAGTACAGAGATCTACGCTGCTCACGAGATTGACAGAATTGCTCGTGT 674
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 AGAAGTCGGTGTTAATACAGAGATCTACGCTGCTCACGAGATTGACAGAATTGCTCGTGT 647
Query 675 AGCATTCGAGACTGCTAGGAAAAGGCGTGGCAAACTTTGTTCTGTTGACAAAGCCAATGT 734
|||||||||||||||||||||||||||||||| || |||||||| || |||||||||||
Sbjct 648 TGCATTCGAGACTGCTAGGAAAAGGCGTGGCAAGCTGTGTTCTGTCGATAAAGCCAATGT 707
Query 735 GTTGGATGCATCAATATTGTGGAGGAAAAGAGTAACAGCTTTAGCCTCTGAATATCCAGA 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GTTGGATGCATCAATATTGTGGAGGAAAAGAGTAACAGCTTTAGCCTCTGAATATCCAGA 767
Query 795 TGTTGAACTATCACATATGTATGTCGATAATGCTGCAATGCAGCTTATTCGTGACCCGAA 854
|||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 768 TGTTGAACTATCGCATATGTATGTCGATAATGCTGCAATGCAGCTTATCCGTTACCCGAA 827
Query 855 ACAGTTTGACACAATCGTTACCAATAACATTTTTGGTGATATATTGTCTGATGAAGCTTC 914
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 828 ACAGTTTGACACAATCGTCACCAATAACATTTTTGGTGATATATTGTCTGATGAAGCTTC 887
Query 915 AATGATCACTGGAAGCATTGGAATGCTTCCATCTGCTAGTCTCGGTGAATCGGGACCTGG 974
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 888 AATGATCACTGGAAGCATTGGGATGCTTCCATCTGCAAGTCTTGGTGAATCGGGACCTGG 947
Query 975 ACTCTTTGAACCTATACATGGTTCAGCACCAGATATAGCTGGACAAGACAAGGCAAACCC 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 ACTCTTTGAACCTATACATGGTTCAGCACCAGATATAGCTGGACAAGACAAGGCAAACCC 1007
Query 1035 ATTGGCCACCATTCTCAGCGCGGCGATGCTTCTGAAGTATGGACTTGGAGAAGAAAAGGC 1094
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||
Sbjct 1008 ATTGGCCACCATTCTCAGTGCGGCGATGCTTCTCAAGTATGGACTTGGAGAAGAAACGGC 1067
Query 1095 TGCAAAGAGGATTGAAGACGCTGTCGTGGATGCTCTGAACAAAGGGTTCAGAACCGGAGA 1154
||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct 1068 TGCAAAGAGGATTGAAGACGCGGTCTTGGATGCTCTGAACAAAGGTTTCAGAACCGGAGA 1127
Query 1155 CATCTACTCCCCTGGAAATAAACTGGTGGGATGCAAGGAAATGGGTGAGGAGGTTCTCAA 1214
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 CATCTACTCCCCCGGAAATAAACTGGTGGGATGCAAGGAAATGGGTGAGGAGGTTCTCAA 1187
Query 1215 ATCAGTGGAATCCAAAGTTCCAGCTACTGTTTAAGTTTATTGATGATTTGAAGCACTTGA 1274
|||| |||| ||||||||||||||||||||||||||||| ||||||||| || | |
Sbjct 1188 ATCACTGGACTCCAAAGTTCCAGCTACTGTTTAAGTTTACTGATGATTT-AA--A----A 1240
Query 1275 AAAAGTTTGTGTAGCACTTGGTTTTACGGTCACTTATATGCTAATCCATGCA--ACA--- 1329
|| || ||||||| |||||||||||||| |||| |||||||||||||| | | |
Sbjct 1241 AA--GT--GTGTAGCCCTTGGTTTTACGGTTACTTGTATGCTAATCCATGTATTAGAAAC 1296
Query 1330 T-T-GTA--C---CTTTTATAATAAATAAATTATTTGGGATCGA-TTCTGCAATTCAAAG 1381
| | ||| | ||||||||||||||||| ||||||||||||| |||||||||| ||||
Sbjct 1297 TGTAGTATTCTAGCTTTTATAATAAATAAAATATTTGGGATCGAATTCTGCAATTTAAAG 1356
Query 1382 ACAAGATTCTCCAAAAACATTTGACAGGTCTCCTGCCTTTACTTACCTTGTTCTTGAAGA 1441
|||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct 1357 ACAAGATTCTCCAAGAACATTTGACAAGTCTCCTGCCTC-ACTTACCCTGTTCTTGAAGA 1415
Query 1442 TTGAGAATTTCTCTTCAACTACAA 1465
||||||| |||||| |||||||||
Sbjct 1416 TTGAGAAGTTCTCTCCAACTACAA 1439
> Ahg477193 jgi|Araly1|477193|fgenesh2_kg.2__2323__AT1G80560.1
Length=1403
Score = 1109 bits (600), Expect = 0.0
Identities = 949/1118 (85%), Gaps = 22/1118 (2%)
Strand=Plus/Plus
Query 142 CCTGGGAAAAAACGGTATAACATCGCTCTGCTTCCCGGAGACGGTATCGGTCCAGAAGTT 201
||||| |||||||| || |||||| |||| |||||||| ||||| |||||||| || |||
Sbjct 129 CCTGGAAAAAAACGATACAACATCACTCTCCTTCCCGGTGACGGCATCGGTCCGGAGGTT 188
Query 202 ATCTCTGTTGCTAAGAATGTGCTTCAGAAAGCTGGAT-CTCTCGAAGGACTGGAGTTTGA 260
||||| |||| || |||||||||||| ||||||||| || | |||||| |||| ||| |
Sbjct 189 GTCTCTATTGCCAAAAATGTGCTTCAGCAAGCTGGATCCT-TGGAAGGAGTGGAATTT-A 246
Query 261 -TTTCAAG-GAGATGCCTGTCGGAGGAGCAGCCTTGGATTTGGTTGGAGTTCCATTGCCG 318
||| | |||||||| | || ||||| || ||||||||||| |||||||| ||||||
Sbjct 247 GCTTC-CGCGAGATGCCAATAGGTGGAGCTGCTTTGGATTTGGTCGGAGTTCCCTTGCCG 305
Query 319 GAGGAAACTTTCACGGCTGCAAAACTATCTGATGCCA-TTCTTCTTGGAGCTATTGGAGG 377
||||| || || | ||||| | | ||| |||| || | ||||||||||| ||||||||
Sbjct 306 GAGGAGACCATCGCAGCTGCTACAGAATCAGATG-CACTGCTTCTTGGAGCCATTGGAGG 364
Query 378 GTACAAATGGGACAAGAATGAGAAACATCTGAGACCTGAGA-TGGCTCTGTTTTACCTTA 436
|||||| ||||| || ||||| ||||||||||| ||||||| || | | || | ||
Sbjct 365 GTACAAGTGGGATAACAATGAAAAACATCTGAGGCCTGAGACGGGGT-TACTTCAGATTC 423
Query 437 GAAG-AGATCTCAAAGTCTTTGCTAATTTGAGACCTGCTACAGTTTTGCCACAGCTAGTT 495
| | | ||||||||||||||| ||| ||||||||||||||||| | |||||| ||||
Sbjct 424 G-TGCCGCTCTCAAAGTCTTTGCAAATCTGAGACCTGCTACAGTTCTCCCACAGTTAGTG 482
Query 496 GATGCTTCCACAC-TGAAGAAAGAAGTAGCAGAAGGTGTTGATATGATGATTGTTAGGGA 554
||||||||||| | |||||| |||||||||||||||||||||| | ||| |||| |||||
Sbjct 483 GATGCTTCCAC-CTTGAAGAGAGAAGTAGCAGAAGGTGTTGATCTAATGGTTGTAAGGGA 541
Query 555 GCTCACAGGAGGTATTTACTTTGGAGAGCCAAGAGGCATTACGATCAATGAAAATGGCGA 614
||| ||||||||||||||||||||||||||||| ||||| | || |||||||||||||||
Sbjct 542 GCTTACAGGAGGTATTTACTTTGGAGAGCCAAGGGGCATAAAGACCAATGAAAATGGCGA 601
Query 615 AGAAGTCGGCG-TTAGTACAGAGATCTACGCTGCTCACGAGATTGACAGAATTGCTCGTG 673
||||| || | ||| ||| ||| | || ||||||||||||||||| |||||||||||||
Sbjct 602 GGAAGTTGG-GTTTAATACTGAGGTTTATGCTGCTCACGAGATTGATAGAATTGCTCGTG 660
Query 674 TAGCATTCGAGACTGCTAGGAAAAGGCGTGGCAAACTTTGTTCTGTTGACAAAGCCAATG 733
| || || ||||||||| ||||| |||| ||||| || |||||||| |||||||| ||||
Sbjct 661 TTGCCTTTGAGACTGCTCGGAAACGGCGCGGCAAGCTGTGTTCTGTCGACAAAGCTAATG 720
Query 734 TGTTGGATGCATCAATATTGTGGAGGAAAA-GAGTAACAGCTTTAGCCTCTGAATATCCA 792
| ||||| || ||||| || |||| ||||| |||| ||||| |||||||||||||||||
Sbjct 721 TCTTGGACGCCTCAATCTTATGGA-GAAAACGAGTGACAGCATTAGCCTCTGAATATCCT 779
Query 793 GATGTTGAACTATCACATATGTATGTCGATAATGCTGCAATGCAGCTTATTCGTGACCCG 852
|||||||| || |||||||||||||| || ||||| || ||||||||| | ||||||||
Sbjct 780 GATGTTGAGCTGTCACATATGTATGTTGACAATGCCGCGATGCAGCTTGTCCGTGACCCA 839
Query 853 AAACAGTTTGACACAATCGTTACCAATAACATTTTTGGTGATATATTGTCTGATGAAGCT 912
|||||||||||||| ||||||||||| ||||| |||||||||||||| || |||||||||
Sbjct 840 AAACAGTTTGACACCATCGTTACCAACAACATCTTTGGTGATATATTATCCGATGAAGCT 899
Query 913 TCAATGATCACTGGAAGCATTGGAATGCTTCCATCTGCTAGTCTCGGTGAATCGGGACCT 972
||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||||||
Sbjct 900 TCAATGATCACAGGAAGCATTGGAATGCTGCCATCTGCTAGTCTCAGTGATTCGGGACCT 959
Query 973 GGACTCTTTGAACCTATACATGGTTCAGCACCAGATATAGCTGGACAAGACAAGGCAAAC 1032
|||||||||||||||||||||||||| ||||| ||||| |||||||| || |||||||||
Sbjct 960 GGACTCTTTGAACCTATACATGGTTCTGCACCTGATATTGCTGGACAGGATAAGGCAAAC 1019
Query 1033 CCATTGGCCACCATTCTCAGCGCGGCGATGCTTCTGAAGTATGGACTTGGAGAAGAAAAG 1092
|||||||| |||||||||||||| || ||||||||||| || ||||||||||||||||||
Sbjct 1020 CCATTGGCAACCATTCTCAGCGCTGCAATGCTTCTGAAATACGGACTTGGAGAAGAAAAG 1079
Query 1093 GCTGCAAAGAGGATTGAAGACGCTGTCGT-GGATGCTCTGAACAAAGGGTTCAGAACCGG 1151
|| || ||||| ||||||||||| || || || |||||||||||| || |||||||| ||
Sbjct 1080 GCAGCCAAGAGAATTGAAGACGCAGT-GTTGGTTGCTCTGAACAACGGATTCAGAACTGG 1138
Query 1152 AGACATCTACTCCCCTGGAA-ATAAACTGGTGGGATGCAAGGAAATGGGTGAGGAGGTTC 1210
||| || |||||| | |||| | ||||||||||| |||||||| ||||| || |||||||
Sbjct 1139 AGATATTTACTCCGCAGGAACA-AAACTGGTGGGCTGCAAGGAGATGGGAGAAGAGGTTC 1197
Query 1211 TCAAATCAGTGGAATCCAAAGTTCCAGCTACTGTTTAA 1248
| || |||||||| ||| ||||||| ||| ||||||||
Sbjct 1198 TGAAGTCAGTGGACTCCCAAGTTCCTGCTTCTGTTTAA 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5