BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14210.1
Length=2453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488255 jgi|Araly1|488255|fgenesh2_kg.6__1389__AT5G14210.1 3241 0.0
Ahg922595 jgi|Araly1|922595|scaffold_103876.1 394 2e-108
> Ahg488255 jgi|Araly1|488255|fgenesh2_kg.6__1389__AT5G14210.1
Length=2564
Score = 3241 bits (1755), Expect = 0.0
Identities = 1899/1969 (96%), Gaps = 8/1969 (0%)
Strand=Plus/Plus
Query 1 ATGGAACAATT-AAAGGTTTTACCTTTGCTCTTTCTTTCATGGG-T-T-ATGTTCTTACA 56
||||||| ||| |||||| ||||||||||||||||||||||||| | | |||||||||||
Sbjct 1 ATGGAAC-ATTCAAAGGTCTTACCTTTGCTCTTTCTTTCATGGGTTATGATGTTCTTACA 59
Query 57 AAGCACTCATCAACTGCCGAACTCTCAGACTCAGGTCCTGTATCAGCTCAGGAAGCATCT 116
|||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAGCACCCATCAACTTCAAAACTCTCAGACTCAGGTCCTGTATCAGCTCAGGAAGCATCT 119
Query 117 GGAATTCCCTAAAGCTCTGGAATCTTGGGGAAATTACTATGGAGACTTATGTCAAATCCC 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGAATTCCCTAAAGCTCTGGAATCTTGGGGAAATTACTATGGAGACTTATGTCAAATCCC 179
Query 177 TGCAACTGCTCACATGAGCATCACCTGTCAAGGTAATTCCATCACGGAGCTTAAAGTCAT 236
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 TGCAACTGCTCATATGAGCATCACCTGTCAAGGTAATTCCATCACGGAGCTTAAAGTTAT 239
Query 237 GGGGGACAAGCTTTTTAAACCATTTGGTATGTTTGATGGGTCTTCACTTCCAAATCACAC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGGGGACAAGCTTTTTAAACCATTTGGTATGTTTGATGGGTCTTCACTTCCAAATCACAC 299
Query 297 TCTGTCTGAAGCATTCATAATTGATTCTTTTGTTACCACATTGACAAGGCTTACAAGCTT 356
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTCTCTGAAGCATTCTTAATTGATTCTTTTGTTACCACATTGACAAGGCTTACAAGCTT 359
Query 357 GAGGGTTCTTAGCTTAGTGTCTCTAGGTATCTATGGTGAGTTCCCAGGGAAAATCCATCG 416
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 GAGGGTTCTTAGCTTAGTGTCTCTAGGTATCTATGGTGAGTTCCCAGGGAAGATCCATCG 419
Query 417 GTTGAATTCTCTTGAGTACTTGGATTTGAGTTCAAATTTTCTGTTTGGCTCTGTCCCTCC 476
|||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 420 GTTGAATTCTCTTGAGTACTTGGATTTGAGTTCAAATTATCTGTTCGGTTCTGTCCCTCC 479
Query 477 TGATATTTCCAGATTGGTTATGCTTCAAAGTCTGATGCTTGATGGAAATTACTTCAACGG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGATATTTCCAGATTGGTTATGCTTCAAAGTCTGATGCTTGATGGAAATTACTTCAACGG 539
Query 537 TAGTGTTCCAGACACGTTGGATTCCTTGACCAATCTTACTGTTCTTAGTTTAAAGAACAA 596
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAGTGTTCCTGACACGTTGGATTCCTTGACCAATCTTACTGTTCTTAGTTTAAAGAACAA 599
Query 597 TCGGTTCAAAGGTCCATTTCCTTCTTCAATTTGCAGAATTGGAAGACTAACAAATCTTGC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCGGTTCAAAGGTCCATTTCCTTCTTCAATTTGCAGAATTGGAAGACTAACAAATCTTGC 659
Query 657 TCTATCACACAATGAGATTTCTGGTAAATTGCCTGATCTCAGCAAGTTAAGTCATCTGCA 716
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 TCTATCACACAATGAGATTTCTGGTAAATTGCCTGATCTCAGCAAGTTGAGTCATCTGCA 719
Query 717 TATGCTGGATCTGAGAGAAAACCACTTGGATTCTGAACTACCTGTCATGCCTATAAGATT 776
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 TATGCTGGATCTGAGAGAAAACCACTTGGATTCTGAACTACCTGTGATGCCTATAAGATT 779
Query 777 AGTTACTGTTCTCCTGAGCAAGAACTCCTTCTCAGGCGAAATTCCAAGACGTTTTGGCGG 836
||||||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct 780 GGTTACTGTTCTTCTGAGCAAGAACTCCTTCTCTGGCGAAATTCCCAGACCTTTTGGCGC 839
Query 837 TTTGTCTCAGCTTCAGCATCTTGACTTGTCGTTCAATCATCTGACTGGAACTCCATCTCG 896
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 840 TTTGTCTCAGCTTCAGCATCTTGATTTGTCGTTCAATCATTTGACTGGAACTCCATCTCG 899
Query 897 GTTCTTGTTCTCTTTGCCAAACATTAGTTACTTGGATTTGGCATCTAACAAGCTCAGTGG 956
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 900 GTTCTTGTTCTCTTTGCCAAACATTAGTTACTTGGACTTGGCATCTAACATGCTCAGTGG 959
Query 957 GAAGCTACCTCTTAATCTGACCTGTGGAGGCAAACTCGGATTTGTGGATTTGTCGAATAA 1016
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 GAAGCTACCACTTAATCTGACCTGTGGAGGCAAACTTGGATTTGTGGATTTGTCGAATAA 1019
Query 1017 CAGATTGATTGGGACTCCTCCCCGTTGCTTGGCAGGAGCTTCCGGCGAGCGAGTTGTTAA 1076
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CAGATTAATTGGGACTCCTCCCCGTTGCTTGGCAGGAGCTTCCGGCGAGCGAGTTGTTAA 1079
Query 1077 ACTTGGTGGAAACTGCTTGTCCATAATTGGCAGTCATGATCAGCATCAAGAATTCTTATG 1136
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 ACTCGGTGGAAACTGCTTGTCCATAATTGGCAGTCATGATCAGCATCAAGAGTTCTTATG 1139
Query 1137 CGAAGAGGCTGAAACTGAGGGAAAACAGTTCCAAGGAAGAAAGGTTGGGATTTTGATTGC 1196
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGAAGAGGCTGAAAATGAGGGAAAACAGTTCCAAGGAAGAAAGGTTGGGATTTTGATTGC 1199
Query 1197 TGTCATTGGTGGAGCTGTTCTTGTTCTTGTGTTTTTTGTATTAGTTATCCTCCTCCTGTT 1256
||| |||||||||| |||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 1200 TGTAATTGGTGGAGGTGTTCTCGTTCTTGTGTTTTTTGTATTAGTAATCCTCCT---GTT 1256
Query 1257 ATGCACAAACCGCTGCTCTAGCTGTTGTTCAAGAGAAAAGTCAGTGCCGCAAACTCGGCT 1316
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 ATGCACAAACCGCTGCTCTTGCTGTTGTTCAAGAGAAAAGTCAGTGCCGCAAACTCGGCT 1316
Query 1317 TAAGGTTGTGACAGATAACTCACACACCAGTCTCTCCTCTGAAGTTCTTGCTAGTGCAAG 1376
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1317 TAAGGTTGTGACAGATAATTCACACACCAGTCTCTCAGCTGAAGTTCTTGCTAGTGCAAG 1376
Query 1377 GTTAATCTCTCAAACAGCAAAGCTAGGTGCACAGGGTGTGCCCTCATGCCGGTCCTTTTC 1436
||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||
Sbjct 1377 GTTAATCTCTCAAACAGCAAAGCTAGGTGCACAAGGTGCGCCCTCATGCCGGTCATTTTC 1436
Query 1437 TTTTGAAGATTTAAAGGAAGCCACAGACGATTTTGATTCATCACGTTTCTTAGGTGAAGG 1496
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TTTTGAAGAGTTAAAGGAAGCCACAGACGATTTTGATTCATCACGTTTCTTAGGTGAAGG 1496
Query 1497 CTCCCTTGGAAAGCTATACAGAGGAACACTGGAAAATGGAAGTTCCATAGCTATCAGATG 1556
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1497 CTCCCTTGGAAAGCTATACAGAGGAACACTTGAAAATGGAAGTTCCATAGCTATCAGATG 1556
Query 1557 TCTGGTTTTATCAAGGAAATTCTCCAGCCAGAGTATCAGAGGTCACTTAGACTGGATGGC 1616
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1557 TCTTGTTTTATCAAGGAAATTCTCCAGCCAGAGTATCAGAGGTCACTTAGATTGGATGTC 1616
Query 1617 AAAGCTCAACCATCCTCATCTCCTTGGCTTCTTGGGCCATTGTACGCAAACCAGCGGAGA 1676
||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||
Sbjct 1617 AAAGCTCAACCATCCTCATCTCCTTAGCTTCTTGGGCCATTGCACTCAAACCAGCGGAGA 1676
Query 1677 ACACGATCCTGTTGCAACCATACTCTACCTTGTATACGAGTATATGCCCAACGGGAGCTA 1736
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 ACACGTTCCTGTTGCAACCATACTCTACCTTGTATACGAGTATATGCCCAACGGGAGCTA 1736
Query 1737 TCGCACACATCTATCAGAATCTTTCTCGGAGAAGATCCTGACATGGCCAGATCGGCTAGC 1796
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1737 TCGCACACATCTATCAGAATCCTTCTCGGAGAAGATCCTGACATGGCCAGATCGGCTAGC 1796
Query 1797 AATTCTGATTGAGATAGCAAAGGCAGTTCATTTTCTTCACACCGGTGTAATGCCTGGTTC 1856
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1797 AATTCTGATTGAGATAGCAAAGGCAGTTCATTTTCTCCACACCGGTGTAATGCCTGGTTC 1856
Query 1857 ATTCAACAATCAGCTTAAGACTAACAATATTTTGCTTGACGAACACAAGATTGCAAAGCT 1916
|||||||||||| || ||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 1857 ATTCAACAATCATCTAAAGACGAACAACATTTTGCTTGACGAACACAAAATTGCAAAGCT 1916
Query 1917 CAGTGACTATGGAGTCTCTGCCATCATTGAAGAGAACGAAAAGCTTGAG 1965
||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1917 CAGTGACTATGGAGTCTCTGCCATCATTGAAGAGAACGAAAAGCTCGAG 1965
Score = 782 bits (423), Expect = 0.0
Identities = 450/463 (97%), Gaps = 2/463 (0%)
Strand=Plus/Plus
Query 1992 GAAAAAGGCTAAAAGAGAGGACGATGTGTACAACTTCGGATTCATACTTCTGGAATCTCT 2051
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2103 GAAAATGGCTAAAAGAGAGGACGATGTGTACAACTTCGGATTCATACTTCTGGAATCTCT 2162
Query 2052 GATAGGACCAGTGCCCACTACAAAAGGAGAGGCTTTTCTTCTCAACGAAATGACATCATT 2111
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2163 GATAGGACCAGTGCCCACTACAAAAGGAGAGGCTTATCTTCTCAACGAAATGACATCATT 2222
Query 2112 TGGGAGCCAAGACGGTCGGCAGAAAATAGTAAGTCCAACAGTCCTAACAACAAGCTCGCA 2171
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2223 TGGGAGCCAAGACGGTCGGCAGAAAATAGTAAGTCCAACGGTCCTAACAACAAGCTCGCA 2282
Query 2172 GGAGTCTTTATCGATTGCGATCTCAATCGCCAATAAATGTGTTTTGCTTGAACCTTCCGC 2231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2283 GGAGTCTTTATCGATTGCGATCTCAATCGCCAATAAATGTGTTTTGCTTGAACCTTCCGC 2342
Query 2232 AAGACCTTCCTTTGAAGATGTTCTCTGGAACTTACAATACGCAGCTCAAATGCAGTCTGC 2291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2343 AAGACCTTCCTTTGAAGATGTTCTCTGGAACTTACAATACGCAGCTCAAATGCAGTCTGC 2402
Query 2292 CGCAGACGCTGAACGCAAATCTGATACGTCGTCGTGAATCCAAAGGCTAACCTAATGATT 2351
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2403 CGCAGATGCTGAACGCAAATCTGATACGTCGTCGTGAATCCCAAGGCTAACCTAATGATT 2462
Query 2352 GATAGTTTTTTCGGTTTTCTAAATGTAAAGCTCTATAAGTTTGGTTTT-CAGTATAAAAA 2410
|||||||||| ||||||| ||||||||||| | ||||||||||||||| |||||||||||
Sbjct 2463 GATAGTTTTT-CGGTTTTTTAAATGTAAAGTTTTATAAGTTTGGTTTTTCAGTATAAAAA 2521
Query 2411 TGTAAGACTCTTGAGACTAAAAATCATAGTAGCTTGTCTTCTC 2453
||||||||||||| |||||||||||||||| |||||||||||
Sbjct 2522 TGTAAGACTCTTGCGACTAAAAATCATAGTTTCTTGTCTTCTC 2564
Score = 54.7 bits (29), Expect = 3e-06
Identities = 32/33 (97%), Gaps = 1/33 (3%)
Strand=Plus/Plus
Query 1961 TTG-AGACAAAGTCAGAAACCCACAAGTCAAAG 1992
||| |||||||||||||||||||||||||||||
Sbjct 1994 TTGCAGACAAAGTCAGAAACCCACAAGTCAAAG 2026
> Ahg922595 jgi|Araly1|922595|scaffold_103876.1
Length=469
Score = 394 bits (213), Expect = 2e-108
Identities = 235/246 (96%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 2103 GACATCATTTGGGAGCCAAGACGGTCGGCAGAAAATAGTAAGTCCAACAGTCCTAACAAC 2162
||| ||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||
Sbjct 224 GACGTCATTTGGGAGCCAAGACGGTTGGCAGAAAACAGTAAGTCCAACGGTCCTAACAAC 283
Query 2163 AAGCTCGCAGGAGTCTTTATCGATTGCGATCTCAATCGCCAATAAATGTGTTTTGCTTGA 2222
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 284 AAGCTCGCGGGAGTCTTTATCGATTGCCATCTCAATCGCCAATAAATGTGTTTTGCTTGA 343
Query 2223 ACCTTCCGCAAGACCTTCCTTTGAAGATGTTCTCTGGAACTTACAATACGCAGCTCAAAT 2282
|||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |||||||
Sbjct 344 ACCTTCTGCAAGACCTTCCTTTGAAGATGTTCTCCGGAACTTACAATATGCATCTCAAAT 403
Query 2283 GCAGTCTGCCGCAGACGCTGAACGCAAATCTGATACGTCGTCGTGAATCCAAAGGCTAAC 2342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 GCAGTCTGCCGCAGACGCTGAACGCAAATCTGATACGTCGTCGTGAATCCAAAGGCTAAC 463
Query 2343 CTAATG 2348
|| |||
Sbjct 464 CTGATG 469
Score = 180 bits (97), Expect = 5e-44
Identities = 107/112 (96%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 1992 GAAAAAGGCTAAAAGAGAGGACGATGTGTACAACTTCGGATTCATACTTCTGGAATCTCT 2051
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 17 GAAAATGGCTAAAAGAGAGGACGATGTGTACAACTTTGGATTCATACTTCTGGAATCTCT 76
Query 2052 GATAGGACCAGTGCCCACTACAAAAGGAGAGGCTTTTCTTCTCAACGAAATG 2103
||||||||||||||| ||||||||||||||||| | ||||||||||||||||
Sbjct 77 GATAGGACCAGTGCCTACTACAAAAGGAGAGGCCTATCTTCTCAACGAAATG 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92445024615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5