BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14220.1
Length=1822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488256 jgi|Araly1|488256|fgenesh2_kg.6__1390__AT5G14220.1 2551 0.0
> Ahg488256 jgi|Araly1|488256|fgenesh2_kg.6__1390__AT5G14220.1
Length=1793
Score = 2551 bits (1381), Expect = 0.0
Identities = 1662/1788 (93%), Gaps = 58/1788 (3%)
Strand=Plus/Plus
Query 47 TTGCAGATAGCAATGGCGTCTGGAGCAGTAGCAGATC---AT-C-AAA-TTGAAGCGGTT 100
|||||| ||||||||| ||||||||||||||| |||| || | ||| ||||| || ||
Sbjct 47 TTGCAGCTAGCAATGGAGTCTGGAGCAGTAGCTGATCATGATACAAAATTTGAATCGATT 106
Query 101 TCAGGAAAAAGAGTCGCAGTCGTAGGTGCAGGTGTAAGTGGACTTGCGGCGGCTTACAAG 160
|| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 107 TCCGGGAAAAGAGTCGCAGTAGTAGGTGCAGGTGTAAGTGGTCTTGCGGCGGCTTACAAA 166
Query 161 TTGAAATCGAGGGGTTTGAATGTGACTGTGTTTGAAGCTGATGGAAGAGT-AGGTGGGAA 219
||||||||||||||||| ||||||||||||||||||||||||| |||| | |||||||||
Sbjct 167 TTGAAATCGAGGGGTTTAAATGTGACTGTGTTTGAAGCTGATGAAAGA-TCAGGTGGGAA 225
Query 220 GTTGAGAAGTGTTATGCAAAATGGTTTGATTTGGGATGAAGGAGCAAACACCATGACTGA 279
||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 226 GTTGACAAGTGTTATGCAAAATGGCTTGATTTGGGACCAAGGAGCAAACACCATGACTGA 285
Query 280 GGCTGAGCCAGAAGTTGGGAGTTTACTTGATGATCTTGGGCTTCGTGAGAAACAACAATT 339
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 286 GGCTGAGCCAGAAGTTGGGAGTTTGCTCGATGATCTTGGGCTTCGTGACAAACAACAATT 345
Query 340 TCCAATTTCACAGAAAAAGCGGTATATTGTGCGGAATGGTGTACCTGTGATGCTACCTAC 399
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 346 TCCAATTTCACAGAAAAAGCGGTATATTGTGCGGAATGGTGTGCCTGTGATGCTACCTAC 405
Query 400 CAATCCCATAGAGCTGGTCACAAGTAGTGTGCTCTCTACCCAATCTAAGTTTCAAATCTT 459
||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 406 CAATCCCATAGAGTTGGTCACAAGTAGTGTACTCTCTACCCAAGCTAAGATTCAAATCTT 465
Query 460 GTTGGAACCATTT-TTATGGAAG-AAAA--A---GTCCTCAAAAGTCTCAGATGCATCTG 512
||||||||||||| || |||||| |||| | ||||||||||||||||||||||||||
Sbjct 466 GTTGGAACCATTTCTT-TGGAAGAAAAATGACTCGTCCTCAAAAGTCTCAGATGCATCTG 524
Query 513 CTGAAGAAAGTGTAAGCGAGTTCTTTCAACGCCATTTTGGACAAGAGGTTGTTGACTATC 572
|||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct 525 CTGAAGAAAGTGTAAGTGGGTTCTTTCAACGCCATTTTGGACAAGAGGTTGTGGACTATC 584
Query 573 TCATCGACCCTTTTGTTGGTGGAACAAGTGCTGCGGACCCTGATTCCCTTTCAATGAAGC 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TCATCGACCCTTTTGTTGGTGGAACAAGTGCTGCGGACCCTGATTCCCTTTCAATGAAGC 644
Query 633 ATTCTTTCCCAGATCTCTGGAATGTAGAGAAAAGTTTTGGCTCTATTATAGTCGGTGCAA 692
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 ATTCTTTTCCAGATCTCTGGAATGTAGAGAAAAGTTTTGGCTCTATTATAGTCGGTGCAA 704
Query 693 TCAGAACAAAGTTTGCTGCTAAAGGTGGTAAAAGTAGAGACA-CAAAGAGTTCTCCTGGC 751
||||||||||||| ||||||||||||||||||||| |||| | |||||||||||||||||
Sbjct 705 TCAGAACAAAGTTGGCTGCTAAAGGTGGTAAAAGTGGAGA-AGCAAAGAGTTCTCCTGGC 763
Query 752 ACAAAAAAGGGTTCGCGTGGGTCATTCTCTTTTAAGGGGGGAATGCAGATTCTTCCTGAT 811
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 ACAAAAAGGGGTTCGCGCGGGTCATTCTCTTTTAAGGGGGGAATGCAGATTCTTCCTGAT 823
Query 812 ACGTTGTGCAAAAGTCTCTCACATGATGAGATCAATTTAGACTCCAAGGTACTCTCTTTG 871
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 824 ATGTTGTGCAAAAGTCTCTCACATGATGAGATCAATTTAGACTCCAAGGTTCTCTCTTTG 883
Query 872 TCTTACAATTCTGGATCAAGACAGGAGAACTGGTCATTATCTTGTGTTTCGCATAATGAA 931
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 884 TCTTACAATTCTGGATCAAGACAGGAGAACTGGTCACTATCTTGTGTTTCACATAATGAA 943
Query 932 ACGCAGAGACAAAACCCCCATTATGATGCTGTAATTATGACGGCTCCTCTGTGCAATGTG 991
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 944 ACGCAGAGACAAAACCTCCATTATGATGCTGTAGTTATGACGGCTCCTCTGTGCAATGTG 1003
Query 992 AAGGAGATGAAGGTTATGAAAGGAGGACAACCCTTTCAGCTAAACTTTCTCCCCGAGATT 1051
||||| |||||||||| ||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1004 AAGGAAATGAAGGTTACGAAAGGAGGGCAACCCTTTCTGCTAAACTTTCTCCCCGAGATT 1063
Query 1052 AATTACATGCCCCTCTCGGTTTTAATCACCACATTCACAAAGGAGAAAGTAAAGAGACCT 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 AATTACATGCCCCTCTCGGTTTTAATCACCACATTCACAAAGGAGAAAGTAAAGAGACCT 1123
Query 1112 CTTGAAGGCTTTGGGGTACTCATTCCATCTAAGGAGCAAAAGCATGGTTTCAAAACTCTA 1171
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1124 CTTGAAGGCTTTGGGGTACTTATTCCATCTAAGGAGCAAAAGCATGGTTTCAAAACTCTA 1183
Query 1172 GGTACACTTTTTTCATCAATGATGTTTCCAGATCGTTCCCCTAGTGACGTTCATCTATAT 1231
|||||||| || ||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1184 GGTACACTCTTCTCATCAATGATGTTTCCAGATCGTTGCCCTAGTGACCTTCATCTATAT 1243
Query 1232 ACAACTTTTATTGGTGGGAGTAGGAACCAGGAACTAGCCAAAGCTTCCACTGACGAATTA 1291
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1244 ACAACTTTTATTGGTGGGAGTAGGAACCAGGAACTGGCCAAAGCTTCCACAGACGAATTA 1303
Query 1292 AAACAAGTTGTGACTTCTGACCTTCAGCGACTGTTGGGGGTTGAAGGTGAACCCGTGTCT 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 AAACAAGTTGTGACTTCTGACCTTCAGCGACTGTTGGGGGTTGAAGGTGAACCCGTGTCT 1363
Query 1352 GTCAACCATTACTATTGGAGGAAAGCATTCCCGTTGTATGACAGCAGCTATGACTCAGTC 1411
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1364 GTCAACCATTACTATTGGAGGAAAGCATTCCCGTTGTATGACAGCAGCTATGGCTCAGTC 1423
Query 1412 ATGGAAGCAATTGACAAGATGGAGAATGATCTACCTGGGTTCTTCTATGCAGGTAATCAT 1471
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1424 ATGGAAGCAATTGACAAGATGGAGAAAGATCTACCCGGGTTCTTCTACGCAGGTAATCAT 1483
Query 1472 CGAGGGGGGCTCTCTGTTGGGAAATCAATAGCATCAGGTTGCAAAGCAGCTGACCTTGTG 1531
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1484 CGAGGCGGGCTCTCTGTTGGGAAATCAATAGCATCAGGTTGCAAAGCAGCTGATCTTGTG 1543
Query 1532 ATCTCATACCTGGAGTCTTGCTCAAATGACAAGAAACCAAATGACAGCTTAT-AACATTG 1590
||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||
Sbjct 1544 ATCTCATACCTGGAGTCTTGCTCAAATGACAAGAAACCAGATGAGAGCTTATGAACATTG 1603
Query 1591 TCAAGGTTCGTCCCTTTTTATCACTTACTTTGTAAACTTGTAAAATGCAACAAGCCGCCG 1650
||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 1604 TCAAGGTTCGTCCCTTTTTATCACTTAATTTGTAAA-----A---TGCAAT--------- 1646
Query 1651 TGCGATTAGCCAACAA-CTCAGCAAAACCCAGATTCTCATAAGGCTCACTAATTCCAGAA 1709
|||||||||||||||| ||||||||||||| | | | || | | ||| || |
Sbjct 1647 TGCGATTAGCCAACAAACTCAGCAAAACCC---T-C--A-----CT-A--A-TTCTAGCA 1691
Query 1710 TAAACTATTTATGTATTGTTTGGTCTGTTTTCTTGTTGCATCACTGGTATGGTCTGTCTA 1769
|||||||| |||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1692 TAAACTATCCATGTATTGTTTGGTCTGTTTTCTTGTTGCATCACTGGTCTG-TCC-TC-- 1747
Query 1770 GGTAGAAGAATATGATAGGGTGAGGGATTTTAGGATTGAAGAATCTTT 1817
|||||||||| ||||| | |||| |||||||||||||||||||||||
Sbjct 1748 GGTAGAAGAACATGATCG--TGAGAGATTTTAGGATTGAAGAATCTTT 1793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68410080020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5