BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14230.1
Length=2587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488257 jgi|Araly1|488257|fgenesh2_kg.6__1391__AT5G14230.1 4037 0.0
> Ahg488257 jgi|Araly1|488257|fgenesh2_kg.6__1391__AT5G14230.1
Length=2601
Score = 4037 bits (2186), Expect = 0.0
Identities = 2468/2604 (95%), Gaps = 20/2604 (1%)
Strand=Plus/Plus
Query 1 GGCGCTCACTTCTTTTCAAG--t--c-tctctct-tc-tctctcGAGCCTCGCGTCTGTG 53
|||||||||||||||||||| | | ||||||| || ||||||||||||||||||||||
Sbjct 1 GGCGCTCACTTCTTTTCAAGTCTCCCTTCTCTCTCTCTTCTCTCGAGCCTCGCGTCTGTG 60
Query 54 TAAAGAGACAAAACATATTCTCTAAAGCGGCGACGTTTAAGAACATTCGGTCAACGACTT 113
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TAAAGAGACAAAACCGATTCTCTAAAGCGGCGACGTTTTAGAACATTCGGTCAACGACTT 120
Query 114 ACGGCGGCGTTGGAATCAAAACTCCGACAATGACGGTTTTCTCCGGCAGACAAGTCGTTC 173
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 ACGGCGGCGTTGGAATCAAAACTCCGACAATGACGGTTTTCTCCGGCAAACAAGTCGTTC 180
Query 174 CGATGGATTACGAAGCCGAGGTATCACAACGGCTTCTAGAAGCCATCCTCGACGGAGATT 233
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 181 CGATGGATTACGAAGCCGAGGTTTCACAACGGCTTCTAGAAGCTATCCTCGACGGAGATT 240
Query 234 TCAAAACGGCATCGGATTGCGTCTCCGATCCACTCGTCGACGTTAATTTCGTCGGCGCCG 293
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 TCAAAACGGCATCGGAGTGCGTCTCCGATCCACTCGTCGACGTGAATTTCGTCGGCGCCG 300
Query 294 TCAGCTTAAAAACAAGGAGGAGCGAAGTCGTCCTCCGTGATGAGTCTCCCAGCGAAGTCC 353
|||||||||| || ||||||| ||| ||||||||||||||||| || |||||||||||||
Sbjct 301 TCAGCTTAAAGACGAGGAGGATCGAGGTCGTCCTCCGTGATGAATCCCCCAGCGAAGTCC 360
Query 354 GCGTCGAGTACGAAGAATTCAAAACCGATGTAACGGCGTTATTCCTCGCCGTTAATTTCG 413
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 GAGTCGAGTACGAAGAATTCAAAACCGGTGTAACGGCGTTATTCCTCGCCGTTAATTTCG 420
Query 414 GAAACGCAGCTCTCGTGAAGGAATTACTGAACATTGGAGCTGATGTGAACCAGAAGCTCT 473
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 421 GAAACGTAGCTCTCGTGAAGGAATTATTGAACATTGGAGCTGATGTGAACCAGAAGCTTT 480
Query 474 TCAGGGGATTTGCAACAACTGTTGCTGTAAGGGAAGGTCATTTCGATGTCTTTGAGATTC 533
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 481 TCAGGGGATTTGCAACAACTGTAGCTGTAAGGGAAGGTCATTTTGATGTATTTGAGATTC 540
Query 534 TACTCAAAGCTGGTGCTTCTCAGCCCGCTTGTGAAGAAGCTCTAGTAGGGGCGAGCTGTC 593
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TACTCAAAGCCGGTGCTTCTCAGCCCGCTTGTGAAGAAGCTCTAGTAGGGGCGAGCTGTC 600
Query 594 ACGGACGCTCGAGGTTCGTTGAGCTGCTTATGGGAACTGATCTTATTCGGCCTCAGGTTG 653
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||| || |
Sbjct 601 ACGGACGCTCGAGGTTCGCTGAGCTGCTCATGGGAACTGATCTTATTCGGCCTCATGTCG 660
Query 654 CTGTGCATGCTCTCGCCACTGCTTGTTGCAGGGGTTTTGTGGACGTCGTAGGGACCTTGC 713
|||| |||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 661 CTGTCCATGCTCTAGCCACTGCTTGTTGCAGAGGTTTTGTGGACGTTGTAGGGGCCTTGC 720
Query 714 TCAAATGTGGTGTAGATGCTAATTCAACCGATAGGCTTCTTCTTCAATCTTCGAAACCTT 773
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 721 TCAAATGTGGTGTAGATGCTAATTCAACCGATAGGCTTCTTCTTCAATCTTCAAAACCTT 780
Query 774 CTCTTTACACAAATGTAGACTGTACAGCTCTTGTTGCTGCCATTGTCAATAGGCAAGTCT 833
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTCTTTACACAAATGTGGACTGTACAGCTCTTGTTGCTGCCATTGTCAATAGGCAAGTCT 840
Query 834 CTGCTGTCCGCGTCCTACTACAGGCTGGCGTCAAGACAGATATCATGGTGAGGCTTGGAG 893
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 841 CTGCTGTCCGCGTGCTACTACAGGCTGGTGTCAAGACAGATATCATGGTGAGGCTTGGAG 900
Query 894 CATGGTCATGGGATACTAACACTGGAGAAGAGTTTCGGGTGGGAGCTGGAGTGGCTGAGC 953
||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 901 CATGGTCATGGGACACTAACACTGGAGAAGAGTTCCGGGTTGGAGCTGGAGTGGCTGAGC 960
Query 954 CCTATCCTTTAACCTGGTGTGCTGTAGAATACTTTGAAACTAGTGGCGACATTTTGCGTT 1013
|||| ||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 961 CCTACCCTTTAATCTGGTGTGCTGTAGAATACTTTGAAACCAGTGGAGACATATTGCGTT 1020
Query 1014 TGTTGCTCAAACTCCAGTCTCCAAACGCTCTTCACAACGGTCGGACTCTTCTACACCATG 1073
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1021 TGTTGCTCAAAGTCCAGTCTCCAAACGCTCCTCACAACGGTCGGACTCTTCTACACCATG 1080
Query 1074 CTGTCCTCTGTGGCAACAAGGCAGCCGTCAGTGTCCTCCTTGACTGTGGCGCCGATCCAG 1133
| ||||| ||||||||| ||||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 1081 CCGTCCTTTGTGGCAACCAGGCAGCTGTCAGAGTCCTCCTTAACTGTGGCGCCGATCCAG 1140
Query 1134 AAGCTCCTATCAAAACTTCACGAGGCATTGAACTCAGACCGATTCATATTGCTGCACGTG 1193
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1141 AAGCTCCTATCAAAACTTCACGAGAAATTGAACTCAGACCGATTCATATTGCTGCACGTG 1200
Query 1194 ACGGATCAGTGGAGATCATACAACAACT-CGTTGGCTTTGGCTGCGATATAAACTCGAAG 1252
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 1201 ACGGATCAGTGGAGATCATACAACAACTGC-TTAGCTTTGGCTGCGATATAAACTCGAAG 1259
Query 1253 AATGATGTAGGGAACACAGCCCTGTTGATCTCAATAAAACACAAACATCCAGAGTGCGTC 1312
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1260 AATGATGTGGGGAACACAGCCTTGTTGATCTCAATAAAACACAAACATCCAGAGTGCGTA 1319
Query 1313 AAGGTTCTCGCCCTTGATGGTGCTGATTTCGGTTTAGTGAACAAGTTTGGTCATTCTGCT 1372
|||||||||||||||| |||||||||||||||| | ||||||||||| || |||||||||
Sbjct 1320 AAGGTTCTCGCCCTTGCTGGTGCTGATTTCGGTGTCGTGAACAAGTTCGGCCATTCTGCT 1379
Query 1373 GTTTCGATCGCTGAGTCAAACAAGTGGTCTCTTGGATTAGAGCGAGTAATTCTTGAGCTG 1432
||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| |||
Sbjct 1380 GTTTCGATCGCTGAGTCAAACAAGTGGTCTCTTGGATTAAAACGACTAATTCTTGAACTG 1439
Query 1433 ATCCGGTTCGGTGTTGTTCCACATTCAAGCAACGCTTCAGTATTCTCGCCTTTGCTATAT 1492
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 ATCCGGTTCGGTGGGGTTCCACATTCAAGCAACGCTTCAGTATTCTCGCCTTTGCTATAC 1499
Query 1493 GGGGCTCAAGCAGGAGATGCTGAGGCGCTTAAAGCGCTTGTAAAAGCTCAAGACATCTAC 1552
| |||||||||||||||| ||||||| |||||||| ||||||||| ||||| ||||||||
Sbjct 1500 GTGGCTCAAGCAGGAGATTCTGAGGCTCTTAAAGCTCTTGTAAAAACTCAAAACATCTAC 1559
Query 1553 CTAGACTATCAAGATGAGGAAGGCTTTTCGGCTGCAATGCTAGCGGCCATGAATGGCCAC 1612
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1560 TTAGACTATCAAGATGAGGAAGGCTTTTCGGCTGCAATGCTAGCCGCCATGAATGGCCAC 1619
Query 1613 GTTGAAGCATTTAGAGTCTTAGTCTACGCAGGCGCAGACGTGAAGCTGTATAACAACTCT 1672
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1620 GTTGAAGCATTCAGAGTCTTAGTCTACGCAGGCGCAGACGTGAAGCTGTATAACAATTCT 1679
Query 1673 GGCGACACGGTAGTCTCTCTGTCTGAACAGAACGGTAACCGTGACGTGATAGAGAAGGTG 1732
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 GGCGACACAGTAGTCTCTCTGTCTGAACAGAACGGTAACCGTGACGTGATAGAGAAGGTG 1739
Query 1733 ATGCTCGAGTTTGCTCTCGAGAAGGACAGCAGAAACATGGCAGGCGGGTTTTATGCTTTA 1792
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1740 ATGCTCGAGTTTGCTCTTGAGAAGGACAGCAGAAACATGGCAGGCGGGTTCTATGCTTTA 1799
Query 1793 CACTGTGCTGCACGGCGTGGAGACGTCAAAGCAGTGAAGCTTTTGAGTGGAAAAGGATAC 1852
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1800 CACTATGCTGCACGGCGTGGAGACGTCAAAGCAGTGAATCTTTTGAGTGGAAAAGGATAC 1859
Query 1853 AGTCTAGACATCCCGGATGGAGATGGCTACACTCCGCTCATGCTTGCAGCCAGAGAGGGC 1912
||| | ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1860 AGTTTGGACATACCGGATGGAGATGGCTACACTCCGCTCATGCTTGCTGCCATAGAGGGC 1919
Query 1913 CATGGACATATGTGTGAATACCTAATCTCCTGTGGCGCAAACTGCAATGCTAAGAACGGA 1972
|||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||
Sbjct 1920 CATGGACATATGTGTGAATACCTAATCTCCCGTGGCGCAAACTGCAGTGTTAAGAACGGA 1979
Query 1973 AGAGGGGAAA-AGCTGCTGGATCTCGCGACTGGTGATGCGGAGAAGGTGATCCGTAATGA 2031
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 AGAGGGGAAACA-CTGCTGGATCTCGCGACTGGTGATGCGGAGAAGGTGATCCGTAATGA 2038
Query 2032 GTTGTCTCGGAGGTTTGTGATAGA-AGGAAGCAGTGTGATGAAACACACCAAGGGAGGGA 2090
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 2039 GTTGTCTCGGAGGTTTGTGATA-ACAGGAAGCAGTGTGATGAAACACACCAAGGGAGGGA 2097
Query 2091 AAGGAAAGAAGCATGGGAAAGGATTGAGAATGTTGGAATCAAGTGGAGTACTAAGTTGGG 2150
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 AAGGGAAGAAGCATGGGAAGGGATTGAGAATGTTGGAATCAAGTGGAGTACTAAGTTGGG 2157
Query 2151 GAAAGTCACGGAAGAGGACTGTGGTGTGCAAGGAAGTAGAGATCGGGATGAGCCAGCGGT 2210
||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 GAAAGTCCCGGAAGAGAAATGTGGTGTGCAAGGAAGTAGAGATCGGGATGAGCCAGCGGT 2217
Query 2211 TCAGGAAGAACCGTAAGGGGAAAGGCGATGGAGCGGAGGAGGAAG--GG-ATTTTCCGGG 2267
||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||||||
Sbjct 2218 TCAGGAAGAACCGTAAGGGGAAAGGCGTTGGAGCGGAAGAGGAAGAAGGGATTTTCCGGG 2277
Query 2268 TAGTGACTACGGAAAACAAGGAGGTTCATTTTGTGTGTGAAGGTGGGTTGGTGTGTGCAG 2327
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2278 TAGTGACTACGGAAAACAAGGAGGTTCATTTTGTGTGCGAAGGTGGGTTGGTGTGTGCAG 2337
Query 2328 AGATGTGGGTGAGGGGAATACGACTTGTGACCAGAGAGACAATTTGTGGAAGAACTCAGA 2387
|||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||
Sbjct 2338 AGATGTGGGTGAGGGGAATAAGACTTGTGACCAGAGAGACTATTTGTGGGAGAACTCAGA 2397
Query 2388 CTCAGAATTAG--TGTTGTTTATGTATGTATATAAAGAAGTTTTGAGAAAGGGAGCTTCA 2445
||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2398 CTCAGGATTAGAGTGTTGTTTTTGTATGTATATAAAGAAGTTTTGAGAAAGTGAGCTTCA 2457
Query 2446 TTTTGAAGGTAGTGTGCTTCTATTGTGTTGGGGATGTTTATAGTTCTTGGGTTTGGTATC 2505
||||||||||||||| ||||| | ||||||||| ||||||||||| ||||||||| ||||
Sbjct 2458 TTTTGAAGGTAGTGTTCTTCTGTCGTGTTGGGGGTGTTTATAGTTGTTGGGTTTGATATC 2517
Query 2506 TGCAGTATATTT-GTGAACTGTGAAGTAGTTCGAGTTGCACATGAATGAAAA-CTAAAAC 2563
|| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 2518 TGGAGTATATTTTGTGAACTGTGAAGTAGTTCGAGTTGCATATGAATGAAAAACTAAAAC 2577
Query 2564 ATCTCAGTTGATTTGAGATTCTCC 2587
||| ||||||||||||||||||||
Sbjct 2578 ATCCCAGTTGATTTGAGATTCTCC 2601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97549117445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5