BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14230.1 Length=2587 Score E Sequences producing significant alignments: (Bits) Value Ahg488257 jgi|Araly1|488257|fgenesh2_kg.6__1391__AT5G14230.1 4037 0.0 > Ahg488257 jgi|Araly1|488257|fgenesh2_kg.6__1391__AT5G14230.1 Length=2601 Score = 4037 bits (2186), Expect = 0.0 Identities = 2468/2604 (95%), Gaps = 20/2604 (1%) Strand=Plus/Plus Query 1 GGCGCTCACTTCTTTTCAAG--t--c-tctctct-tc-tctctcGAGCCTCGCGTCTGTG 53 |||||||||||||||||||| | | ||||||| || |||||||||||||||||||||| Sbjct 1 GGCGCTCACTTCTTTTCAAGTCTCCCTTCTCTCTCTCTTCTCTCGAGCCTCGCGTCTGTG 60 Query 54 TAAAGAGACAAAACATATTCTCTAAAGCGGCGACGTTTAAGAACATTCGGTCAACGACTT 113 |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 TAAAGAGACAAAACCGATTCTCTAAAGCGGCGACGTTTTAGAACATTCGGTCAACGACTT 120 Query 114 ACGGCGGCGTTGGAATCAAAACTCCGACAATGACGGTTTTCTCCGGCAGACAAGTCGTTC 173 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 121 ACGGCGGCGTTGGAATCAAAACTCCGACAATGACGGTTTTCTCCGGCAAACAAGTCGTTC 180 Query 174 CGATGGATTACGAAGCCGAGGTATCACAACGGCTTCTAGAAGCCATCCTCGACGGAGATT 233 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 181 CGATGGATTACGAAGCCGAGGTTTCACAACGGCTTCTAGAAGCTATCCTCGACGGAGATT 240 Query 234 TCAAAACGGCATCGGATTGCGTCTCCGATCCACTCGTCGACGTTAATTTCGTCGGCGCCG 293 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 241 TCAAAACGGCATCGGAGTGCGTCTCCGATCCACTCGTCGACGTGAATTTCGTCGGCGCCG 300 Query 294 TCAGCTTAAAAACAAGGAGGAGCGAAGTCGTCCTCCGTGATGAGTCTCCCAGCGAAGTCC 353 |||||||||| || ||||||| ||| ||||||||||||||||| || ||||||||||||| Sbjct 301 TCAGCTTAAAGACGAGGAGGATCGAGGTCGTCCTCCGTGATGAATCCCCCAGCGAAGTCC 360 Query 354 GCGTCGAGTACGAAGAATTCAAAACCGATGTAACGGCGTTATTCCTCGCCGTTAATTTCG 413 | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 361 GAGTCGAGTACGAAGAATTCAAAACCGGTGTAACGGCGTTATTCCTCGCCGTTAATTTCG 420 Query 414 GAAACGCAGCTCTCGTGAAGGAATTACTGAACATTGGAGCTGATGTGAACCAGAAGCTCT 473 |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 421 GAAACGTAGCTCTCGTGAAGGAATTATTGAACATTGGAGCTGATGTGAACCAGAAGCTTT 480 Query 474 TCAGGGGATTTGCAACAACTGTTGCTGTAAGGGAAGGTCATTTCGATGTCTTTGAGATTC 533 |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| Sbjct 481 TCAGGGGATTTGCAACAACTGTAGCTGTAAGGGAAGGTCATTTTGATGTATTTGAGATTC 540 Query 534 TACTCAAAGCTGGTGCTTCTCAGCCCGCTTGTGAAGAAGCTCTAGTAGGGGCGAGCTGTC 593 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TACTCAAAGCCGGTGCTTCTCAGCCCGCTTGTGAAGAAGCTCTAGTAGGGGCGAGCTGTC 600 Query 594 ACGGACGCTCGAGGTTCGTTGAGCTGCTTATGGGAACTGATCTTATTCGGCCTCAGGTTG 653 |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| || | Sbjct 601 ACGGACGCTCGAGGTTCGCTGAGCTGCTCATGGGAACTGATCTTATTCGGCCTCATGTCG 660 Query 654 CTGTGCATGCTCTCGCCACTGCTTGTTGCAGGGGTTTTGTGGACGTCGTAGGGACCTTGC 713 |||| |||||||| ||||||||||||||||| |||||||||||||| |||||| |||||| Sbjct 661 CTGTCCATGCTCTAGCCACTGCTTGTTGCAGAGGTTTTGTGGACGTTGTAGGGGCCTTGC 720 Query 714 TCAAATGTGGTGTAGATGCTAATTCAACCGATAGGCTTCTTCTTCAATCTTCGAAACCTT 773 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 721 TCAAATGTGGTGTAGATGCTAATTCAACCGATAGGCTTCTTCTTCAATCTTCAAAACCTT 780 Query 774 CTCTTTACACAAATGTAGACTGTACAGCTCTTGTTGCTGCCATTGTCAATAGGCAAGTCT 833 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CTCTTTACACAAATGTGGACTGTACAGCTCTTGTTGCTGCCATTGTCAATAGGCAAGTCT 840 Query 834 CTGCTGTCCGCGTCCTACTACAGGCTGGCGTCAAGACAGATATCATGGTGAGGCTTGGAG 893 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 841 CTGCTGTCCGCGTGCTACTACAGGCTGGTGTCAAGACAGATATCATGGTGAGGCTTGGAG 900 Query 894 CATGGTCATGGGATACTAACACTGGAGAAGAGTTTCGGGTGGGAGCTGGAGTGGCTGAGC 953 ||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 901 CATGGTCATGGGACACTAACACTGGAGAAGAGTTCCGGGTTGGAGCTGGAGTGGCTGAGC 960 Query 954 CCTATCCTTTAACCTGGTGTGCTGTAGAATACTTTGAAACTAGTGGCGACATTTTGCGTT 1013 |||| ||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct 961 CCTACCCTTTAATCTGGTGTGCTGTAGAATACTTTGAAACCAGTGGAGACATATTGCGTT 1020 Query 1014 TGTTGCTCAAACTCCAGTCTCCAAACGCTCTTCACAACGGTCGGACTCTTCTACACCATG 1073 ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1021 TGTTGCTCAAAGTCCAGTCTCCAAACGCTCCTCACAACGGTCGGACTCTTCTACACCATG 1080 Query 1074 CTGTCCTCTGTGGCAACAAGGCAGCCGTCAGTGTCCTCCTTGACTGTGGCGCCGATCCAG 1133 | ||||| ||||||||| ||||||| ||||| ||||||||| |||||||||||||||||| Sbjct 1081 CCGTCCTTTGTGGCAACCAGGCAGCTGTCAGAGTCCTCCTTAACTGTGGCGCCGATCCAG 1140 Query 1134 AAGCTCCTATCAAAACTTCACGAGGCATTGAACTCAGACCGATTCATATTGCTGCACGTG 1193 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1141 AAGCTCCTATCAAAACTTCACGAGAAATTGAACTCAGACCGATTCATATTGCTGCACGTG 1200 Query 1194 ACGGATCAGTGGAGATCATACAACAACT-CGTTGGCTTTGGCTGCGATATAAACTCGAAG 1252 |||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| Sbjct 1201 ACGGATCAGTGGAGATCATACAACAACTGC-TTAGCTTTGGCTGCGATATAAACTCGAAG 1259 Query 1253 AATGATGTAGGGAACACAGCCCTGTTGATCTCAATAAAACACAAACATCCAGAGTGCGTC 1312 |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1260 AATGATGTGGGGAACACAGCCTTGTTGATCTCAATAAAACACAAACATCCAGAGTGCGTA 1319 Query 1313 AAGGTTCTCGCCCTTGATGGTGCTGATTTCGGTTTAGTGAACAAGTTTGGTCATTCTGCT 1372 |||||||||||||||| |||||||||||||||| | ||||||||||| || ||||||||| Sbjct 1320 AAGGTTCTCGCCCTTGCTGGTGCTGATTTCGGTGTCGTGAACAAGTTCGGCCATTCTGCT 1379 Query 1373 GTTTCGATCGCTGAGTCAAACAAGTGGTCTCTTGGATTAGAGCGAGTAATTCTTGAGCTG 1432 ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| ||| Sbjct 1380 GTTTCGATCGCTGAGTCAAACAAGTGGTCTCTTGGATTAAAACGACTAATTCTTGAACTG 1439 Query 1433 ATCCGGTTCGGTGTTGTTCCACATTCAAGCAACGCTTCAGTATTCTCGCCTTTGCTATAT 1492 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 ATCCGGTTCGGTGGGGTTCCACATTCAAGCAACGCTTCAGTATTCTCGCCTTTGCTATAC 1499 Query 1493 GGGGCTCAAGCAGGAGATGCTGAGGCGCTTAAAGCGCTTGTAAAAGCTCAAGACATCTAC 1552 | |||||||||||||||| ||||||| |||||||| ||||||||| ||||| |||||||| Sbjct 1500 GTGGCTCAAGCAGGAGATTCTGAGGCTCTTAAAGCTCTTGTAAAAACTCAAAACATCTAC 1559 Query 1553 CTAGACTATCAAGATGAGGAAGGCTTTTCGGCTGCAATGCTAGCGGCCATGAATGGCCAC 1612 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1560 TTAGACTATCAAGATGAGGAAGGCTTTTCGGCTGCAATGCTAGCCGCCATGAATGGCCAC 1619 Query 1613 GTTGAAGCATTTAGAGTCTTAGTCTACGCAGGCGCAGACGTGAAGCTGTATAACAACTCT 1672 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1620 GTTGAAGCATTCAGAGTCTTAGTCTACGCAGGCGCAGACGTGAAGCTGTATAACAATTCT 1679 Query 1673 GGCGACACGGTAGTCTCTCTGTCTGAACAGAACGGTAACCGTGACGTGATAGAGAAGGTG 1732 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1680 GGCGACACAGTAGTCTCTCTGTCTGAACAGAACGGTAACCGTGACGTGATAGAGAAGGTG 1739 Query 1733 ATGCTCGAGTTTGCTCTCGAGAAGGACAGCAGAAACATGGCAGGCGGGTTTTATGCTTTA 1792 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 1740 ATGCTCGAGTTTGCTCTTGAGAAGGACAGCAGAAACATGGCAGGCGGGTTCTATGCTTTA 1799 Query 1793 CACTGTGCTGCACGGCGTGGAGACGTCAAAGCAGTGAAGCTTTTGAGTGGAAAAGGATAC 1852 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1800 CACTATGCTGCACGGCGTGGAGACGTCAAAGCAGTGAATCTTTTGAGTGGAAAAGGATAC 1859 Query 1853 AGTCTAGACATCCCGGATGGAGATGGCTACACTCCGCTCATGCTTGCAGCCAGAGAGGGC 1912 ||| | ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 1860 AGTTTGGACATACCGGATGGAGATGGCTACACTCCGCTCATGCTTGCTGCCATAGAGGGC 1919 Query 1913 CATGGACATATGTGTGAATACCTAATCTCCTGTGGCGCAAACTGCAATGCTAAGAACGGA 1972 |||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||| Sbjct 1920 CATGGACATATGTGTGAATACCTAATCTCCCGTGGCGCAAACTGCAGTGTTAAGAACGGA 1979 Query 1973 AGAGGGGAAA-AGCTGCTGGATCTCGCGACTGGTGATGCGGAGAAGGTGATCCGTAATGA 2031 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1980 AGAGGGGAAACA-CTGCTGGATCTCGCGACTGGTGATGCGGAGAAGGTGATCCGTAATGA 2038 Query 2032 GTTGTCTCGGAGGTTTGTGATAGA-AGGAAGCAGTGTGATGAAACACACCAAGGGAGGGA 2090 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 2039 GTTGTCTCGGAGGTTTGTGATA-ACAGGAAGCAGTGTGATGAAACACACCAAGGGAGGGA 2097 Query 2091 AAGGAAAGAAGCATGGGAAAGGATTGAGAATGTTGGAATCAAGTGGAGTACTAAGTTGGG 2150 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2098 AAGGGAAGAAGCATGGGAAGGGATTGAGAATGTTGGAATCAAGTGGAGTACTAAGTTGGG 2157 Query 2151 GAAAGTCACGGAAGAGGACTGTGGTGTGCAAGGAAGTAGAGATCGGGATGAGCCAGCGGT 2210 ||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 2158 GAAAGTCCCGGAAGAGAAATGTGGTGTGCAAGGAAGTAGAGATCGGGATGAGCCAGCGGT 2217 Query 2211 TCAGGAAGAACCGTAAGGGGAAAGGCGATGGAGCGGAGGAGGAAG--GG-ATTTTCCGGG 2267 ||||||||||||||||||||||||||| ||||||||| ||||||| || |||||||||| Sbjct 2218 TCAGGAAGAACCGTAAGGGGAAAGGCGTTGGAGCGGAAGAGGAAGAAGGGATTTTCCGGG 2277 Query 2268 TAGTGACTACGGAAAACAAGGAGGTTCATTTTGTGTGTGAAGGTGGGTTGGTGTGTGCAG 2327 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2278 TAGTGACTACGGAAAACAAGGAGGTTCATTTTGTGTGCGAAGGTGGGTTGGTGTGTGCAG 2337 Query 2328 AGATGTGGGTGAGGGGAATACGACTTGTGACCAGAGAGACAATTTGTGGAAGAACTCAGA 2387 |||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||| Sbjct 2338 AGATGTGGGTGAGGGGAATAAGACTTGTGACCAGAGAGACTATTTGTGGGAGAACTCAGA 2397 Query 2388 CTCAGAATTAG--TGTTGTTTATGTATGTATATAAAGAAGTTTTGAGAAAGGGAGCTTCA 2445 ||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 2398 CTCAGGATTAGAGTGTTGTTTTTGTATGTATATAAAGAAGTTTTGAGAAAGTGAGCTTCA 2457 Query 2446 TTTTGAAGGTAGTGTGCTTCTATTGTGTTGGGGATGTTTATAGTTCTTGGGTTTGGTATC 2505 ||||||||||||||| ||||| | ||||||||| ||||||||||| ||||||||| |||| Sbjct 2458 TTTTGAAGGTAGTGTTCTTCTGTCGTGTTGGGGGTGTTTATAGTTGTTGGGTTTGATATC 2517 Query 2506 TGCAGTATATTT-GTGAACTGTGAAGTAGTTCGAGTTGCACATGAATGAAAA-CTAAAAC 2563 || ||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 2518 TGGAGTATATTTTGTGAACTGTGAAGTAGTTCGAGTTGCATATGAATGAAAAACTAAAAC 2577 Query 2564 ATCTCAGTTGATTTGAGATTCTCC 2587 ||| |||||||||||||||||||| Sbjct 2578 ATCCCAGTTGATTTGAGATTCTCC 2601 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97549117445 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5