BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14240.1
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488258 jgi|Araly1|488258|fgenesh2_kg.6__1392__AT5G14240.1 1899 0.0
> Ahg488258 jgi|Araly1|488258|fgenesh2_kg.6__1392__AT5G14240.1
Length=1159
Score = 1899 bits (1028), Expect = 0.0
Identities = 1117/1160 (96%), Gaps = 5/1160 (0%)
Strand=Plus/Plus
Query 1 GAGATTGCGATCACAGAGTGTCAAAGCAATCTGC-TTTTTCTCCTCTCAGATTCAAAGGT 59
|||||||||||||||||||||||||||||||| | |||||||| |||||||||| |||||
Sbjct 1 GAGATTGCGATCACAGAGTGTCAAAGCAATCTCCTTTTTTCTCATCTCAGATTCGAAGGT 60
Query 60 TCTCTTTGAAGCTTCGTAGGTGGTTATAC-TTT-GATGGCGGATTATCATTTCGTGTATA 117
|||||||||||||||||||||||||| || ||| ||||||||| |||||||||||||| |
Sbjct 61 TCTCTTTGAAGCTTCGTAGGTGGTTAAACTTTTCGATGGCGGACTATCATTTCGTGTACA 120
Query 118 AGGACATTGAAGGAGCGTCAACTCAATGGGATGATATCCAGCGGAAATTGGGGAATCTAC 177
||||| ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 121 AGGACGTTGAAGGAGCGTCGACTCAATGGGACGATATCCAGCGGAAATTGGGAAATCTAC 180
Query 178 CGGAGAAGGCTCCGGCTTTCAAACCTCCGGCGTATACTCCGGCGGAAGACGAGTCTTCAG 237
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 181 CGGAGAAGGCTCCGGCTTTCAAACCGCCAGCTTATACTCCGGCGGAAGACGAGTCTTCAG 240
Query 238 CTCCTAAGGATCAGGCATGGTTTGATAAGAAGACAGAGGAGGAGCTTGAGGATCTTGAGG 297
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 CTCCTAAGGATCAGGCATGGTTTGATAAGAAGACAGAGGAAGAGCTTGAGGATCTTGAGG 300
Query 298 ACGACAAAGATCTCGACGATGATCGCTTTCTCGAAGAATACAGGAAGAAGAGGTTGTCTG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACGACAAAGATCTCGACGATGATCGCTTTCTCGAAGAATACAGGAAGAAGAGGTTGTCTG 360
Query 358 AGCTAAGAGAGGCTGCTAAAGTTAAAAGATATGGAACAGTGACTCCCATCTCGGGCTCTG 417
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 AGCTAAGAGAAGCTGCTAAAGTTAAAAGATATGGAACAGTGACTCCAATCTCGGGCTCTG 420
Query 418 ATTTCGTGAGGGAGGTTACGCAAGCTTCTGCTGAAGATTGGGTTGTTGTATGTCTCTATA 477
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 ATTTCGTGCGGGAGGTTACGCAAGCTTCTGCTGAAGATTGGGTTGTTGTATGTCTCTACA 480
Query 478 AAGATGGTGTTGCAGAATGTAGTTTGCTATTGGGTTGTCTAGACGAATTGGGTAGTAGAT 537
|||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||| ||||
Sbjct 481 AAGATGGTTTTGCAGAGTGTGGTTTGCTATTGGGTTGTCTAGACGAATTGGCTAGCAGAT 540
Query 538 ACCCAGCAACAAAGTTCGTTAAGATAATATCTACTGATTGTATTCCGAACTACCCTGATT 597
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 ACCCAGCAACAAAGTTCGTTAAGATCATATCTACTGATTGTATTCCGAACTACCCTGATT 600
Query 598 GCAATCTTCCTACCTTGCTGGTGTACCACCATGGCGCCATCAAAGGAACTCATGTAGGCT 657
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 GCAATCTTCCTACCTTGCTGGTGTACCACCATGGCGCCATTAAAGGAACTCATGTAGGCT 660
Query 658 TAAAGAGCTTTGGCCGTAGGTGCACCCCAGAGAGTGTAGCCTTACTTCTGTGTCAATCAG 717
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGAAGAGCTTTGGCCGTAGGTGCACCCCAGAGAGTGTAGCCTTACTTCTGTGTCAATCAG 720
Query 718 AGCCAGTTCTTAACGATGGCAAAGGAGGAGACGATGACTCCTCGAGGGAAGCTGTGATGG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGCCAGTTCTTAACGATGGCAAAGGAGGAGACGATGACTCCTCGAGGGAAGCTGTGATGG 780
Query 778 CTGGAGTTCGAAGACAGTTCATAGAACGAGTGGTGAAGGACCACGAAGATAAGGATAACG 837
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 781 CTGGAGTTCGAAGACAGTTCATAGAACGAGTGGTGAAGGACCATGAAGATAAGGATAACG 840
Query 838 ATGATGGTGGTTACAATAGTGATTAGAACTTCAAAGCTTCTCTGTTTATCTCTGTTGGTT 897
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATGATGGTGGTTACAGTAGCGATTAGAACTTCAAAGCTTCTCTGTTTATCTCTGTTGGTT 900
Query 898 ATTGCTTGTTGAGTTGGTGACTGGTAAACAAAAGTGCTGACTTCTTGTGTGATGTAAtgt 957
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 901 ATTGCTTGTTGAGTTGGTGACCGGTAAACAAAAGTGCTGACTTCATGTGTGATGTAATGT 960
Query 958 tttttaaacattttgtaacttttgttcttttgaaa-gagacaggaacttcatgttgtttt 1016
||||||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||||
Sbjct 961 TTTTTAAACATTTTGTAACTTATGTTCTTTTTAAAAGAGACAGGAACTTCATTTTGTTTT 1020
Query 1017 ttgATATCCAGGTATCACATGCCGAATTTTAGTGCTGGATCTAAGCCTGTGAATCCATGT 1076
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1021 TTGATATCCAGGTATCACATGCCGAATTTTAGTGCTGGATCTAAGACTGTGAATCCATGT 1080
Query 1077 AAGTTTAGAATAGTCTTTGTTTTGGACAAAGTAATAATCAAATTTGGAGAATCTCAAATC 1136
||||||| |||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1081 AAGTTTAAAATAGTCTCTGTTTTGGACAAAGTAATAATCAA-TTTGGAGAATCGCAAATC 1139
Query 1137 AACTGAGATGTTTTAGTTTT 1156
||||||||||||||||||||
Sbjct 1140 AACTGAGATGTTTTAGTTTT 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43193264961
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5