BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14250.1
Length=1582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488259 jgi|Araly1|488259|fgenesh2_kg.6__1393__AT5G14250.1 2398 0.0
> Ahg488259 jgi|Araly1|488259|fgenesh2_kg.6__1393__AT5G14250.1
Length=1552
Score = 2398 bits (1298), Expect = 0.0
Identities = 1471/1556 (95%), Gaps = 5/1556 (0%)
Strand=Plus/Plus
Query 3 ATAATTAAACAAACAGTTTAGCAAAAGATTTTGAGAGGGAGAAAAAGGGCGATCGATTAG 62
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATAATTAAACAAACAGTTTGGCAAAAGATTTTGAGAGGGAGAAAAA-GGCGATCGATTAG 59
Query 63 GGTTTTTGTGTTTTCGTCTTAGTATCGAAGATGATCGGAGCTGTGAACTCGGTGGAGGCT 122
||||||| |||||||||| | ||| |||||||||||||| | |||||||||||||||||
Sbjct 60 GGTTTTT-CGTTTTCGTCTGAATATTGAAGATGATCGGAGTTATGAACTCGGTGGAGGCT 118
Query 123 GTGATAACGTCAATCCAAGGTTTATCGGGGAGTCCAGAGGATTTATCTGCACTTCACGAT 182
|||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||
Sbjct 119 GTGATAACGTCAATCCAAGGTTTATCGGCGAGTTCAGAGGATTTATCCGCACTTCACGAT 178
Query 183 CTTTTGAGAGGAGCTCAAGACTCGCTCCGAGCCGAACCAGGTGTTAATTTCTCTACTCTT 242
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 179 CTTTTGAGAGGAGCTCAAGACTCGCTCCGAGCCGAACCAGATGTTAATTTCTCTATTCTT 238
Query 243 GACCAGCTCGACGCCTCGAAGCACTCTCTCGGTTACCTGTATTTCCTTGAGGTTCTTACC 302
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 239 GACCAGCTCGACGCCTCGAAGCACTCTCTCGGTTACCTGTACTTCCTTGAGGTTCTTACT 298
Query 303 TGTGGTCCAGTGTCGAAGGAGAAAGCTGCTTATGAGATACCGATAATTGCACGGTTCATC 362
||||||||||| || |||||||||||| |||||||||| ||||||||| |||||||||||
Sbjct 299 TGTGGTCCAGTTTCCAAGGAGAAAGCTTCTTATGAGATTCCGATAATTTCACGGTTCATC 358
Query 363 AATTCTTGTGATGCTGGGCAGATTCGTTTGGCGAGCTATAAATTTGTATCTCTTTGTAAG 422
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 359 AACTCTTGTGATGCTGGGCAGATTCGTTTGGCGAGCGATAAATTTGTATCTCTTTGTAAG 418
Query 423 ATATTGAAAGACCATGTTATAGCACTGGGAGATCCGTTGCGAGGAGTAGGGCCACTGTTA 482
| ||||||||| |||||| ||| |||| ||||||| |||||||| |||||||| |||||
Sbjct 419 AGATTGAAAGAACATGTTTTAGAACTGAGAGATCCCTTGCGAGGGGTAGGGCCTCTGTTG 478
Query 483 AACGCTGTTCAGAAGCTTCAGGTCTCCTCCAAGCGTTTGACTGCATTGCATCCAGATGTT 542
| ||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| ||
Sbjct 479 ACCGCTGTTCAGAAGCTTCAGGTCTCCACCAAACGTTTGACTGCTTTGCATCCAGATCTT 538
Query 543 CTTCAACTCTGTTTGCAGGCGAAATCGTACAAATCTGGTTTCTCCATTCTTAGTGATGAT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CTTCAACTCTGTTTGCAGGCGAAATCGTACAAATCTGGTTTCTCCATTCTTAGTGATGAT 598
Query 603 ATCGTGGAGATTGACCAGCCAAGAGACTTTTTTCTCTATAGCTATTATGGGGGAATGATT 662
||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 599 ATCGTGGAGGTTGACCAGCCAAGAGACTTATTTCTCTATTGCTATTATGGGGGAATGATA 658
Query 663 TGTATTGGACTGAAGAGATTTCAGAAAGCATTAGAGCTTCTTTACAATGTTGTGACTGCT 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGTATTGGACTGAAGAGATTTCAGAAAGCATTAGAGCTTCTTTACAATGTTGTGACTGCT 718
Query 723 CCTATGCATCAAGTCAATGCCATAGCTCTTGAGGCGTACAAAAAGTACATATTGGTGTCT 782
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 719 CCTATGCATCAAGTCAATGCCATAGCCCTTGAGGCGTACAAAAAGTTCATATTGGTGTCT 778
Query 783 CTCATTCACAATGGGCAGTTTACTAACACTCTCCCCAAGTGTGCTTCTACAGCAGCACAG 842
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 779 CTCATTCACAATGGGCAGTTTACTAACAGTCTCCCCAAGTGTGCTTCTACAGCAGCTCAG 838
Query 843 AGGAGCTTCAAGAACTATACCGGACCTTACATTGAACTGGGTAATTGTTACAACGACGGG 902
|||| |||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGGAACTTCAAGACCTTTTCCGGACCTTACATTGAACTGGGTAATTGTTACAACGACGGA 898
Query 903 AAGATTGGTGAACTAGAGGCATTGGTTGTGGCCAGGAATGCAGAATTTGAAGAGGATAAG 962
|||||||||||||| ||||||||||||||||||| || ||||| |||||| | ||||||
Sbjct 899 AAGATTGGTGAACTTGAGGCATTGGTTGTGGCCAAGAGCGCAGAGTTTGAAAATGATAAG 958
Query 963 AACCTTGGATTAGTTAAGCAAGCAGTGTCATCCCTTTACAAGCGTAACATTCTGAGATTG 1022
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 959 AACCTTGGATTAGTTAAGCAAGCAGTGTCATCTCTTTACAAGCGTAACATTCTGAGATTG 1018
Query 1023 ACACAGAAGTACTTGACCCTGTCGCTTCAAGATATAGCCAACATGGTCCAACTTGGTAAT 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ACACAGAAGTACTTGACCCTGTCGCTTCAAGATATAGCCAACATGGTCCAACTTGGTAAT 1078
Query 1083 GCTAAGGAGGCGGAAATGCATGTGCTTCAGATGATCCAGGATGGTCAGATACATGCCCTT 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GCTAAGGAGGCGGAAATGCATGTGCTTCAGATGATCCAGGATGGTCAGATACATGCCCTT 1138
Query 1143 ATCAACCAGAAAGACGGGATGGTCAGATTCTTGGAGGACCCTGAGCAGTACAAATCTAGT 1202
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1139 ATCAACCAGAAAGACGGAATGGTCAGATTCTTGGAAGACCCTGAGCAGTACAAATCTAGT 1198
Query 1203 GAGATGATTGAGATCATGGATTCTGTTATACAAAGGACTATTGGTCTGTCGAAGAATCTC 1262
|||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1199 GAGATGATCGAGGTCATGGATTCTGTTATACAAAGGACTATTGGGCTGTCGAAGAATCTC 1258
Query 1263 TTAGCCATGGATGAGAGCTTATCATGTGACCCTTTATACTTGGGAAAGGTAGGAAGGGAA 1322
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1259 TTAGCCATGGATGAGAGCTTATCATGTGACCCTTTATACTTGGGAAAGGTTGGAAGGGAA 1318
Query 1323 AGACAAAGGTACGACTTTGGAGACGATTTCGATACTGTTCCTCAGAAGTTCTCCATGTAA 1382
||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 1319 AGACAAAGGTATGACTTTGGAGACGATTTTGATACTGTCCCCCAGAAGTTCTCCATGTAA 1378
Query 1383 ACAGCGAAAGTCGAGAAGCACCAACAAAACTTGGCTCAAAGACAACCGTAGT-GTGAATC 1441
|||||| ||| | | |||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1379 ACAGCGGAAGACCAAAAGCACCAGCAAAACTTGGCTCAAAGACAACCGTAGTTGTGAATC 1438
Query 1442 TTGAGAATGTTACTTTTGATTTCTTTGTTCATTTTTGTTGGTTTAAAAAGTTTCATATTT 1501
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TTGAGAATGTTTCTTCTGATTTCTTTGTTCATTTTTGTTGGTTTAAAAAGTTTCATATTT 1498
Query 1502 TTGTCACAATTGCCAACAAGTAGAGAAGACCATTATGGACCCTCAAATCTTTTATT 1557
|||||||||| |||||||||||||||||| | || ||| |||||||||||||
Sbjct 1499 TTGTCACAATGGCCAACAAGTAGAGAAGAAGACCATT--CCCGCAAATCTTTTATT 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59268421220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5