BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14260.3
Length=2067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488263 jgi|Araly1|488263|fgenesh2_kg.6__1397__AT5G14260.2 2856 0.0
> Ahg488263 jgi|Araly1|488263|fgenesh2_kg.6__1397__AT5G14260.2
Length=1902
Score = 2856 bits (1546), Expect = 0.0
Identities = 1713/1792 (96%), Gaps = 18/1792 (1%)
Strand=Plus/Plus
Query 1 GATTTCTCCATTTCCCTCTCTTATCCTCAATGaaaaaaaTAATCTGAGAAAACGCAAAAG 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTTCTTCATTTCCCTCTCTTATCCTCAATGAAAAAAATAATCTGAGAAAACGCAAAAG 60
Query 61 AAGAACGGAGCAAAATCCTCAGAATCGTCGCCGGAGAATCTTTACGTTTCGACATAATCG 120
| |||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 61 AGGAACAGAGCAAAATCCTCAAAATCGCCGCCGGAGAATCTTTACGTTTCGACAGAAT-- 118
Query 121 GAATTTTGGAATTGATAATTCCGATGGAAGGGGTTATCACATGTTTCCATACGAAATGCG 180
|| || |||||||||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct 119 --ATCTT-GAATTGATAATTCCGATGGAAGGGGTCATCACATGTTTCCATTCCAAATGCG 175
Query 181 TCTCTCTTCCAATTCGTTCTTTCCCACTTTCTAGGGTTTCTTCACTTCCTCGGTGGAGGA 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TCTCTCTTCCAATCCGTTCTTTCCCACTTTCTAGGGTTTCTTCACTTCCTCGGTGGAGGA 235
Query 241 ACAATAAATTGATCTCTTCATCGCGATCGGTTCATCTAAGAAGCTTGTGCGTTTC-G--- 296
||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| |
Sbjct 236 ACACTAAATTGATCTCTTCATCGCGATCAGTTCCTCTAAGAAGCTTGTGCGTTTCGGCTT 295
Query 297 --AGCTCAGATACTTTAGTCGCGAGCGGTTCACCAAAGGAAGACGAGAGGCAGAGCAAAG 354
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 296 CAAGCTCAGATACTTTAGTCGCGGGCGGTTCACCAAAGGAAGACGAAAGGCAGAGCAAAG 355
Query 355 TATCGAGCAAGAAGGAAGGAGATGACTCCGAGGATTTGAAGTTTTGGATGGATAAGAATG 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TATCGAGCAAGAAGGAAGGAGATGACTCCGAGGATTTGAAGTTTTGGATGGATAAGAATG 415
Query 415 GGTTGCCACCTTGCAAGGTTATT-CTCAAGGAGAGACCAGCTCATGATCAGAAGCATAAA 473
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 416 GGTTGCCACCTTGCAAGGTT-TTGCTCAAGGAGAGACCAGCTCATGATCAGAAGCATAAA 474
Query 474 CCTATACATTATGTTGCTGCTAGTGAGGATCTTCAGAAGGGTGATGTGGCGTTTTCAGTT 533
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 475 CCCATACATTATGTTGCTGCTAGTGAGGATCTTCAGAAAGGTGATGTGGCGTTTTCAGTT 534
Query 534 CCTGATTCTCTGGTGGTTACTCTGGAAAGAGTTTTGGGAAACGAGACTATTGCTGAACTG 593
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CCTGATTCTTTGGTGGTCACTCTGGAAAGAGTTTTGGGAAACGAGACTATTGCTGAACTG 594
Query 594 TTGACGACGAACAAATTATCCGAACTGGCTTGTCTAGCTTTGTATTTGATGTATGAGAAG 653
||||| ||||||||||| || ||| ||||||| |||||||||||||||||||||||||||
Sbjct 595 TTGACAACGAACAAATTGTCTGAATTGGCTTGCCTAGCTTTGTATTTGATGTATGAGAAG 654
Query 654 AAACAAGGAAAGAAATCAGTATGGTATCCCTATATAAGAGAACTTGATCGTCAAAGAGGA 713
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 655 AAACAAGGGAAGAAATCAGTTTGGTATCCCTATATAAGAGAACTTGATCGTCAAAGAGGA 714
Query 714 AGAGGTCAGTTAGATGCGGAATCCCCTTTGCTGTGGTCAGAGGCTGAGTTAGATTACCTA 773
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 715 AGAGGTCAATTAGATGCGGAATCCCCGTTGCTGTGGTCAGAGGCTGAATTAGATTACCTA 774
Query 774 ACTGGTAGTCCTACCAAGGCCGAAGTTCTTGAGAGGGCTGAAGGGATCAAAAGAGAATAC 833
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 775 ACTGGTAGTCCGACCAAGGCCGAAGTTCTTGAGAGGGCTGAAGGTATCAAAAGAGAATAC 834
Query 834 AATGAGCTTGACACTGTCTGGTTCATGGCTGGATCTTTGTTTCAGCAATACCCATTTGAC 893
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 835 AATGAGCTTGACACTGTCTGGTTTATGGCTGGATCTTTGTTTCAGCAATACCCATTTGAC 894
Query 894 ATACCAACTGAAGCTTTTTCATTTGAGATTTTCAAACAGGCATTTGTTGCCATTCAGTCA 953
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 895 ATACCAACTGAAGCTTTTTCATTTGAGATTTTCAAACAGGCATTTGTTGCTATTCAGTCC 954
Query 954 TGTGTGGTGCATTTACAAAATGTCGGTTTGGCTCGTCGGTTTGCTTTGGTTCCTCTTGGT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TGTGTGGTGCATTTACAAAATGTCGGTTTGGCTCGTCGGTTTGCTTTGGTTCCTCTTGGT 1014
Query 1014 CCTCCCTTGTTGGCCTATTGTTCCAACTGCAAGGCAATGCTTACTGCTGTTGATGGTGCT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CCTCCCTTGTTGGCCTATTGTTCCAACTGCAAGGCAATGCTTACTGCTGTTGATGGTGCT 1074
Query 1074 GTTGAACTCGTGGTAGATAGGCCATATAAGGCCGGGGATCCTATAGTTGTCTGGTGTGGG 1133
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1075 GTTGAGCTCGTGGTAGATAGGCCATATAAGGCTGGGGATCCTATAGTTGTCTGGTGTGGG 1134
Query 1134 CCACAACCAAATGCGAAATTGCTTCTGAACTATGGATTTGTTGATGAGGATAACCCTTAT 1193
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1135 CCACAACCTAATGCGAAATTGCTTCTGAACTATGGATTGGTTGATGAAGATAACCCTTAT 1194
Query 1194 GATAGAGTAATAGTTGAGGCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGA 1253
|||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1195 GATAGAATAATAGTTGAGGCAGCATTGAACACTGAGGATCCTCAATATCAGGACAAGAGA 1254
Query 1254 ATGGTTGCTCAAAGGAACGGAAAATTATCCCAACAAGTATTTCAGGTTCGTGTGGGAAAA 1313
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1255 ATGGTTGCTCAAAGGAACGGAAAATTATCCCAACAAGTTTTTCAGGTTCGTGTGGGAAAA 1314
Query 1314 GAAAGAGAAGCTGTTCAAGACATGCTTCCCTACCTGCGGTTGGGTTACATGTCTGATCCT 1373
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GAAAGAGAAGCTGTCCAAGACATGCTTCCCTACCTGCGGTTGGGTTACATGTCTGATCCT 1374
Query 1374 TCTGAAATGCAGTCAGTAATTTCATCCCAAGGTCCAGTTTGTCCGATGAGCCCTTGTATG 1433
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 1375 TCTGAAATGCAATCAGTAATTTCGTCCCAGGGTCCAGTTTGTCCGATGAGCCCCTGTATG 1434
Query 1434 GAAAGAGCAGTACTAGATCAGCTTGCTAATTACTTCATGAGACGGTTATCTGGCTACCCT 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GAAAGAGCAGTACTAGATCAGCTTGCTAATTACTTCATGAGACGGTTATCTGGCTACCCT 1494
Query 1494 ACTACTCCGAAAGAAGATGATGCATTGTTGGCAGATCCTAGTTTGAGTCCTAGGAAGCGA 1553
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 ACTACTCCGAATGAAGATGATGCATTGTTGGCAGATCCTAGTTTGAGTCCTAGGAAGCGA 1554
Query 1554 GTTGCAACCCGGCTTGTCCAACTGGAGAAGAAAATACTAGTTGCATGCCTTACGACAACA 1613
|| |||||||||||||||||| |||||||||||||||||| ||||||||||| ||| |||
Sbjct 1555 GTGGCAACCCGGCTTGTCCAATTGGAGAAGAAAATACTAGCTGCATGCCTTATGACGACA 1614
Query 1614 GTTGATCTT-TTAAATCAGTTGCCCGATACAGCCATCTCTCCATGCCCAGCACCATATGC 1672
|| ||| || ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1615 GTCGAT-TTGTTAAATCAGTTACCAGATACAGCCATCTCTCCATGCCCAGCACCATATGC 1673
Query 1673 TCCTTCCTTGAAATAAAAAGGTTCGTGTTGTAGCTGCAATTTGTGGGACATGGCAGGAGT 1732
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1674 TCCTTCCTTGAAATAAAAAGGTTCGTGTTGTAGCTGCAATTTGTAGGACATGGCAGAAGT 1733
Query 1733 AATTTTTGGTCGTGTCCTTGATCATTACAATCTGAGGTCGCTTAACTACGGT 1784
|||||||||||||||||||||||||||||||| | | ||||||||||| |||
Sbjct 1734 AATTTTTGGTCGTGTCCTTGATCATTACAATC-G-G-TCGCTTAACTATGGT 1782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77742190045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5