BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14270.2
Length=2935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488264 jgi|Araly1|488264|fgenesh2_kg.6__1398__AT5G14270.1 3179 0.0
> Ahg488264 jgi|Araly1|488264|fgenesh2_kg.6__1398__AT5G14270.1
Length=2472
Score = 3179 bits (1721), Expect = 0.0
Identities = 2070/2238 (92%), Gaps = 26/2238 (1%)
Strand=Plus/Plus
Query 462 AAGCAAATCCGTCATAC-GAGAT-GTTTCGTTTCCTGCAGGATTAGACTGATCCGGAGCT 519
||| ||||||||||||| |||| |||| ||||||| |||||||||||||||||||||||
Sbjct 188 AAGTAAATCCGTCATACTAAGATGGTTT-GTTTCCTACAGGATTAGACTGATCCGGAGCT 246
Query 520 CTTCACGAGATTAAGGGAATCTATTTCACAATTTCGTCGATATGACAGAGAGAAACGGTG 579
|| | | ||| ||||||||||||||| | |||||| |||||||||| | |||||||||||
Sbjct 247 CTACGCTAGAATAAGGGAATCTATTTAAGAATTTCATCGATATGACTGTGAGAAACGGTG 306
Query 580 GTTTCCCTGGTGATTATTGTTTTGAGGCACCCGGTGGAGATTATGATGAAGGATCTGATA 639
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 307 GTTTCCCTGGAGATTATTGTTTTGAGGCACCCGGTGGAGATTACGATGAAGGATCTGATA 366
Query 640 GTCCGAGGGTCTCAGAGGGTTCCAATTGTTCAAAAAGAAAGGTCGGTGAAACCTTCGGTG 699
|||| || | ||| |||||||| |||||||| ||||||||| ||||||||||||| ||||
Sbjct 367 GTCCTAGTGCCTCTGAGGGTTCTAATTGTTCCAAAAGAAAGCTCGGTGAAACCTTTGGTG 426
Query 700 TCTCGAAAATGGTATTACCCTTATCTGGCCTATCATCATCAGATAGGAAGGAGTTGATTC 759
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 427 TCTCGAAAATGGTATTACCCTTGTCTGGCCTGTCATCATCAGATAGGAAGGAGTTGATTC 486
Query 760 GTAGGCTAAGACAAGAGCTGGAACAAATACGAG-TTTTCCAGAAGAATTTTGAGCTTTCT 818
||||||||||||||||||||||||| ||||| | |||||||||||||||| || | |||
Sbjct 487 GTAGGCTAAGACAAGAGCTGGAACAGATACG-GTTTTTCCAGAAGAATTTCGAAATATCT 545
Query 819 AGAACAGTGGCTCTCACTAGCTCTTCTGCTAGTGGTTTGACTCGAGTCAAGAGTTTTGGA 878
||| ||||| |||||||||| |||||||| ||||||||||||| || |||||||||||||
Sbjct 546 AGATCAGTGACTCTCACTAGTTCTTCTGCAAGTGGTTTGACTCCAGCCAAGAGTTTTGGA 605
Query 879 ATGTCGCGATGTTCCACGGGTCCAGGAAAGACGGTGAACCCTATAAGTGCTGCTTCTAAA 938
| ||||||||| || ||||||||||| ||||| ||||| ||| ||||||||||| |||||
Sbjct 606 AAGTCGCGATGCTCTACGGGTCCAGGGAAGACTGTGAATCCTCTAAGTGCTGCTGCTAAA 665
Query 939 CCGACTCCTGTCACTACTGCGGTTATGCTTCTGATGAAGCAATGCGAGGCGCTTTTGAAA 998
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 666 CCGACTCCTGTCACTACTGCGGTTATGCTTCTGATGAAGCAATGTGAGGCGCTCTTAAAA 725
Query 999 CGATTGATGTCACATCAGTATGGTTGGGTGTTCAATACTCCAGTGGATGTTGTCAAGCTG 1058
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 CGATTGATGTCACATCAGTATGGTTGGGTGTTCAATACTCCAGTGGATGTTGTCAAGCTC 785
Query 1059 AATATACTGGACTATTTTAATGTTATTGAGCATCCTATGGATTTAGGAACTGTGAAGAAT 1118
||||| ||||||||||||||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 786 AATATCCTGGACTATTTTAATGTTATTAAGCATCCAATGGATTTGGGAACTGTGAAGAAT 845
Query 1119 AAGTTAACTTCGGGGACATATTCCTGTCCGTCAGAGTTTGCTGCTGATGTTCGGCTTACC 1178
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 AAGTTAACTTCGGGTACTTATTCCTGTCCGTCAGAGTTTGCTGCTGATGTTCGGCTTACC 905
Query 1179 TTCAGCAATGCAATGACGTATAATCCACCTGGTAATGATGTTTATGTTATGGCTGATACA 1238
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 906 TTCAGCAATGCAATGACGTATAATCCACCTGGTAATGATGTTTACGTCATGGCTGATACA 965
Query 1239 CTTCGTAAGTTTTTCGAAGTGAGGTGGAAGACCCTTGAGAAGAAATTATCCGGAACTAAA 1298
||||| |||||||| |||||||||||||||||||| |||||||||||||| |||| ||||
Sbjct 966 CTTCGCAAGTTTTTTGAAGTGAGGTGGAAGACCCTCGAGAAGAAATTATCTGGAATTAAA 1025
Query 1299 GTTCATACTGAACCGAGTAACTTAGATGCCCATAAGGAAAAACATATCGTAATACCTGTG 1358
|||||||| ||||||||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 1026 GTTCATACCGAACCGAGTAACTCAGATGCCCAGGAGGAAAAACATATTGTAATACCTGTG 1085
Query 1359 CCTATGGCTAAGAAGAGGAAGACCACTGCAGTAGACTGTGAGAATGTCGT-AGATCCTGC 1417
|||||||||||||| |||||||| | |||||||||||||||||| ||| | ||| ||||
Sbjct 1086 CCTATGGCTAAGAAAAGGAAGACAAGTGCAGTAGACTGTGAGAACGTC-TCAGAGCCTG- 1143
Query 1418 T-AAACGGGTTATGACTGATGAGGATAGACTCAAGCTGGGCAAGGATTTGGAGTCCTTGA 1476
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1144 TCAAACGGGTTATGACTGATGAGGATAGACTCAAGCTCGGCAAGGATTTGGAGTCCTTGA 1203
Query 1477 CTGAGTTCCCGGCACAATTAATAAATTTCTTGAGAGATCACAACTCAAATGAAGGAGGGA 1536
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1204 CTGAGTTCCCGGCACAATTAATAAATTTCTTGAGAGACCACAACTCAAATGAAGGGGGGA 1263
Query 1537 TTGGGGATGATGAGATTGAGATTGACATTAATGATCTCAGTGACCATGCCTTGTTTCAGT 1596
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1264 TTGGTGATGATGAGATTGAGATTGACATTAATGATCTCAGTCACCATGCCTTGTTTCAGT 1323
Query 1597 TGCGGGATCTCTTAGACGAGCATTTGCGTGAGATCCAAAACAAAAAATCAAGTGTTGAAC 1656
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1324 TGCGGGATCTCTTAGACGAGCATTTGCATGAGAGCCAAAACAAAAAATCAAGTGTTGAAC 1383
Query 1657 CCTGTGAGATAGAGCTTCTGCATGGATCAGTGCCAGGGAATTCATCAATGCAACATTGTG 1716
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1384 CCTGTGAGATAGAGCTTCTGCATGGATCAGTGCCAGGGAATTCATTAATGCAACATTGTG 1443
Query 1717 ATGGGAGTGAATTGGATGATGAAGTTGTTGACATTGGTGAAAATGAACACCCAACATCCA 1776
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 1444 ATGGGAGTGAATTGGATGATGAGGTTGTTGACATTGGTGAAAATGAACACCCAAAATCAA 1503
Query 1777 GCATTTCTCCTGTCACGATAGAGAAGGATCTGGTGTTAGGAAACTCTAATGGTAA-TAG- 1834
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1504 GCATTTCTCCTGTCACGATAGAGAAGGACCTGGTGTTAGGAAACTCTAATGGTATCTTTT 1563
Query 1835 CTTGGGAAGTGTGTCCGGTGATCCTAAAATGTCAAGTTTACCGAGGGCATCAAAGGGGCT 1894
||| | ||| | || || || ||||||||||||||||| |||||||||||||
Sbjct 1564 CTTTT-ACTTGTTTATATTG-TCATAGTGTGTCAAGTTTACCGAGGACATCAAAGGGGCT 1621
Query 1895 TGGAACCATCGATCTTGAACCTATGTTGGATGGAGCTACAAGCGCTTCCCCAACAAGAGG 1954
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1622 TGGAACCATGGATCTTGAACCTATGTTGGATGGAGCTACAAGCTCTTCCCCAACAAGAGG 1681
Query 1955 ATTAGCATCTGTTGGTGGATTGGATCAGCTGGAAAGTGCATCTCCGGAGAAAATAAGTTC 2014
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 AT---CATCTGTTGGTGGATTGGATCAGCTGGAAAGTGCATCTCCGGAGAAAATAAGTTC 1738
Query 2015 TGTTGAGGCGGATTGTCAGCAAGATGGAAATAGTGCTCAGAATGAGAAGCAATTACCTCC 2074
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1739 TGTTGAGGCGGATTGTCAGCAAGATGGAAATAGTGCTCAGACTGAGAAGCAACTACCTCC 1798
Query 2075 TGAAAAGAGCTACAGGGCTGCTATTTTGAAGAACCGATTTGCAGACATAATTTTGAAAGC 2134
|||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1799 TGAAAAGATCTACAGGGCTGCTTTTTTGAAGAATCGATTTGCAGACATAATTTTGAAAGC 1858
Query 2135 CCGAGAGAAACCTCTTAACCAGAATGACACTCGAGATCCAGAGAAGCTGCAGCGTGAGAG 2194
|||||||||||||||||||||||||||| | ||||| ||||||||||| |||||||||||
Sbjct 1859 CCGAGAGAAACCTCTTAACCAGAATGACCCGCGAGACCCAGAGAAGCTCCAGCGTGAGAG 1918
Query 2195 AGAAGAACTCGAGCTTCAAAAGAAGAAAGAGAAAGCGCGATTACAAGCAGAAGCTAAGGC 2254
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1919 AGAAGAACTCGAGCTTCAAAAGAAGAAAGAGAAAGCGCGATTACAAGCAGAAGCCAAGGC 1978
Query 2255 AGCTGAAGAAGCTCGTAGAAAAGCTGAGGCACAAGCTGCAGCTGAAGCTGCGGCTGAGGC 2314
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1979 AGCTGAAGAAGCTCGTAGAAAAGCTGAGGCACGAGCTGCAGCTGAAGCTGCGGCTGAGGC 2038
Query 2315 TAAGAGAAAGCTGGAGCTTGAAAGAGAAGCAGCACGCCAGGCATTGATGGAGATGGAGCA 2374
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2039 TAAGAGAAAGCTGGAGCTTGAAAGAGAAGCAGCGCGCCAGGCATTGATGGAGATGGAACA 2098
Query 2375 GTCGGTTGAACTCAATGAGAACGCAAAGTTTCTCGAGGATCTAGAACTGCTGAAAACAGT 2434
|||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 2099 GTCGGTCGAACTCAACGAGAACGCAAAGTTTCTCAAGGATCTAGAACTGCTCAAAACAGT 2158
Query 2435 CGACACAGACCATTTGACAAATACAATAGAGGAGGA-GGA--TG--G-GCCTG-ATGTTG 2487
||| ||||||||||||||| || ||||||||||||| || || | | | | ||| ||
Sbjct 2159 CGAGACAGACCATTTGACAGATGCAATAGAGGAGGATGGGCCTGATGTGTC-GCATGATG 2217
Query 2488 GGTTGCGTAGTTTCAGTTTTGGGGGTAGTAATCCTCTTGAACAGCTTGGACTGTTTATGA 2547
|||| |||||||||||||||||||||||||||||||| || |||||||| || |||||||
Sbjct 2218 GGTTACGTAGTTTCAGTTTTGGGGGTAGTAATCCTCTGGAGCAGCTTGGGCTATTTATGA 2277
Query 2548 AACAAGATGAGGATGAGGAGGAAGCTGACCCGCTAACTTCGCCAGCCCCTGAAATAGATA 2607
|| | ||||||||||| ||||||||||| ||||| |||||||||||||||| ||| ||||
Sbjct 2278 AAGAGGATGAGGATGATGAGGAAGCTGATCCGCTCACTTCGCCAGCCCCTGGAATTGATA 2337
Query 2608 TAGAAGAGGGAGAGATTGATTGAGGTTGTATGCTGATCCCCAAAACCAAACAATAGATAT 2667
|||||||||||||||||||||||| |||| ||| ||||| |||| ||||||||||| ||
Sbjct 2338 TAGAAGAGGGAGAGATTGATTGAGCTTGTGTGCAGATCCACAAAGTCAAACAATAGA-AT 2396
Query 2668 -ATCTGAATTCTGAATCC 2684
|||||||||||||||||
Sbjct 2397 TATCTGAATTCTGAATCC 2414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110804522705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5