BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14280.1
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893333 jgi|Araly1|893333|Al_scaffold_0006_1329 2102 0.0
Ahg900011 jgi|Araly1|900011|Al_scaffold_0004_661 274 2e-72
> Ahg893333 jgi|Araly1|893333|Al_scaffold_0006_1329
Length=1662
Score = 2102 bits (1138), Expect = 0.0
Identities = 1535/1715 (90%), Gaps = 73/1715 (4%)
Strand=Plus/Plus
Query 1 ATGGCGACTCCGACGGAGCTAGGTTTCTCTTCACCTGGTGGTGGTGGTGACGACTCTGAC 60
||||||||||| |||||||||| |||||||||||| |||||||| || | ||||
Sbjct 1 ATGGCGACTCCAACGGAGCTAGATTTCTCTTCACC---TGGTGGTGCTG--G----TGAC 51
Query 61 GATAACCCTCCACAGAAGCGTACTTCAAAACGTACTGCTTCCGAAACAGCAACagaagaa 120
|||||| |||||| |||||||||||||||||| |||||||||||||||| ||| |
Sbjct 52 GATAACACTCCACGGAAGCGTACTTCAAAACGCACTGCTTCCGAAACAGTAAC------A 105
Query 121 gaaacgaagaagaagaaaaagaagaagacgaagCACAACACAAAAATGGCTTCTCCTCCG 180
| | ||||| || | | ||| | | |||| | || ||| |||||||||| |
Sbjct 106 G---C--AGAAG-AG--ACA-AAG-A-A-GAAG----A-AC-AAATTGGCTTCTCCGATG 147
Query 181 AGCAACCGGATCTGGAACGAAGAAGACGAGCTCTCTATCTTAAAGGGATTGGTGGATTTT 240
|| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 148 AGTAACCGGATCTGGAACGAGGAAGATGAGCTCTCTATCTTAAAGGGATTATTGGATTTT 207
Query 241 CGAGCTAAAACAGGACTCGAATCCAAAATTGATTGGGATGCGTTTTATTGTTACGTCAAA 300
|||||||| ||||| ||||||||||||||||||||||| ||||||||| ||| ||||| |
Sbjct 208 CGAGCTAAGACAGGGCTCGAATCCAAAATTGATTGGGAAGCGTTTTATGGTTTCGTCAGA 267
Query 301 GGTTCCATTCATGTGAAAGTTTCCAAGTG-CCAGCT-TATGAGTAAGACCAGGAAGTTGA 358
||||||||||||||| |||| || ||| | ||| | | ||| |||||||| ||||||||
Sbjct 268 GGTTCCATTCATGTGCAAGTCTCTAAG-GATCAGGTGT-TGAATAAGACCAAGAAGTTGA 325
Query 359 AGAAGAAGTTCCTTGATCAAATGGAGAAAATCGATCAAGGAAATGATCCACATTTTACTA 418
||||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||||||
Sbjct 326 AGAAGAAGTTCCTTGATCATATGGAGAAAATCAATCAAGGAATTGATCCGCATTTTACTA 385
Query 419 GGTCTAGTGAAACTGAAGCTTTTGGATATTCCATGATGATTTGGCGTAAAATTGATGCTG 478
|||||| ||| ||||||| ||||||| |||||||||||||||| | |||| ||||||||
Sbjct 386 GGTCTATTGACTCTGAAGCCTTTGGATTTTCCATGATGATTTGGGGCAAAAATGATGCTG 445
Query 479 AATACACTAATGGTGTTATGGATAAAGCACATCAAAGCGAGAGTGGA-GAGGAGGTGTTT 537
||||||||||||||| |||||||||| || |||||| | ||||| || |||||| |||||
Sbjct 446 AATACACTAATGGTGCTATGGATAAAACATATCAAAACAAGAGT-GACGAGGAGATGTTT 504
Query 538 GAGGAGGATGAGGAAGTGGCCTTAATTGACAAAGGGGCTGCG-AAA---A----G-TGGC 588
|| |||| ||||||||||||||||| ||||| ||||||| | ||| | | ||||
Sbjct 505 AAGAAGGACGAGGAAGTGGCCTTAATCGACAATGGGGCTGGGAAAAGTGACTTTGATGGC 564
Query 589 AAGT---CACCTCATGAAGCTGTTGTTGTTGTTGACAAAATAACTACGAAGAAGAACGGG 645
|| | |||||| | |||| ||||||||||||||||||||||| |||||||||
Sbjct 565 AAATCACCACCTCTTAAAGC---CGTTGTTGTTGACAAAATAACTAC---CAAGAACGGG 618
Query 646 ACTGCTGGAAAAGAGAGtgatgatgatgatgatgatgTGTTGTGTGCTGTGCGGGATGCG 705
|||||||| || | | || | | | ||||||||||||||| ||||||||||||||
Sbjct 619 ACTGCTGG--AA-A-A--GA-G--G--G-TGATGATGTGTTGTGCGCTGTGCGGGATGCA 666
Query 706 TTTGAGACCACCATGATGTCGCAAGGATTAAGTGATTATCAAAAGAAGTTGCAGCTTGAG 765
||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 667 TTTGAGAACACCATGGTGTCGCAAGGTTTAAGTGATTATCAAAAGAAGTTGCAGCTTGAG 726
Query 766 AAGCTGATGAACCTTGGAACTGGTAAAAGAAGAGAGTTGAGCAATGAATGGAAAGCACTA 825
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 727 AAGCTGATGAACCTTGGAACTGGTAAAAGAAGAGAGTTGAGCAACGAATGGAAAGCACTA 786
Query 826 TGTGTTGAGGAACTAAAATTGAATATCAACAAGCTTCGATTTTCCGCCAAGCTTGCAGAG 885
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 787 TGTGTTGAGGAATTAAAATTGAATATCAAGAAGCTTCGATTTTCCGCCAAGCTTGCAGAG 846
Query 886 GCAGCAAATGATGATTAttcttcttcttcttcttcttcCATTGTCTCTT-GGGTTGAGAT 944
||||||||||||||| || | |||||||||||||||||||||| || ||||||||||
Sbjct 847 GCAGCAAATGATGATGATAAATATTCTTCTTCTTCTTCCATTGTC-GTTAGGGTTGAGAT 905
Query 945 TCCGATCTCAATGTCGATCAATATCGGAGAAATCTCAATTCCAGACCTTCCTATCTTCTT 1004
|||||||||||||||||||| |||||||||| |||| ||||||||||| ||| |||||||
Sbjct 906 TCCGATCTCAATGTCGATCACTATCGGAGAATTCTCCATTCCAGACCTCCCTCTCTTCTT 965
Query 1005 CTCCATGTTCTTAACCATCTACCTAATCGCTTACTTCATCGTCTTCCGCAATTGGAAACC 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 CTCCATGTTCTTAACCATCTACCTAATCGCTTACTTCATCGTCTTCCGCAATTGGAAACC 1025
Query 1065 ACAAATCCGTCCCGAAGCTTCAAGCTGCCTGATCTCAATCTTCCATGG-ATCTCCAGCGG 1123
||||||||||||||||||||||||||||||||||||||||||||| || | |||| ||||
Sbjct 1026 ACAAATCCGTCCCGAAGCTTCAAGCTGCCTGATCTCAATCTTCCACGGCA-CTCCGGCGG 1084
Query 1124 TTTTCCTCGCCACACGCGCAGTTTTCTCCTCCTCCGAACGCTCCTTCGCCTCCGCAAACA 1183
|| |||||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct 1085 TTCTCCTCGCCACACGCGCCGTCTTCTCCTCCTCCGCACGCTCCTTCGCCTCCGCAAACA 1144
Query 1184 CCGCCGCACAAAACACCGTCCTCGATTTCAGCGTCGCTTACTTCCTCACCGATCTCTTCC 1243
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 CCGCCGCTCAAAACACCGTCCTCGATTTCAGCGTCGCTTACTTCCTCACCGATCTCTTCC 1204
Query 1244 ACTACATCGTCTTCAACCCTAACGACGTACTCTTCATCGGCCATCACGTAGCCACTCTAT 1303
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1205 ACTACATCGTCTTCAACCCTAACGACGTCCTCTTCATCGGCCATCACCTAGCCACTCTAT 1264
Query 1304 TCGTCTTCCTAACCTGCAGATTCCTCGTCTTCCACGGGGCTTGCGCCATCTTAGGCCTCC 1363
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1265 TCGTCTTCCTAACCTGCAGATTCCTCGTCTTCCACGGCGCCTGCGCCATCTTAGGCCTCC 1324
Query 1364 TGATTCTAGCTGAAGTAACAAGCGCGTGTCAGAACGCGTGGACGCTCGCCGGAGCAAGGA 1423
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 TGATTCTAGCCGAAGTCACAAGCGCGTGTCAGAACGCGTGGACGCTCGCCGGAGCAAGGA 1384
Query 1424 AGAATGATCCGGAATCACGATTAGCTGTGAAAGTGTACGATCTCTTGTCTCCTCCGTTTT 1483
|||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||
Sbjct 1385 AGAATGATCCGGAATCGCGATTAGCCGTAAAAGTGTACGATCTCTTGTCCCCTCCGTTTT 1444
Query 1484 ACGCCTTCTACAGTATCGTTAGGGGTGTGTTGGGACCTTTGTTTTTCGGGAAAATGGTAG 1543
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1445 ACGCCTTCTACAGTATCGTTAGGGGAGTGTTGGGACCTTTGTTTTTCGGGAAAATGGTTG 1504
Query 1544 CGTTTTACGCTCGAGGTGGTGCTCATGGTGTGATACCTAATTGGTTGTGGATTTCTTGGG 1603
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1505 CGTTTTACGCTCGAGGCGGTGCTCATGGTGTGATTCCTAATTGGTTGTGGATTTCTTGGG 1564
Query 1604 CAATTGTTGTTGGAATTGCTATTACTGTTAGTATACTTTGGATTTGGAATCTCTGGATAG 1663
| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1565 CTATTGTTGTTGGAACTGCTATTACGGTTAGTATACTTTGGATTTGGAATCTCTGGATAG 1624
Query 1664 AATTGTTTAGTGAAAGGAAAGCTAACAAAATCAGA 1698
|||||||||| ||||||| ||||| ||||| |||
Sbjct 1625 AATTGTTTAGACAAAGGAAGGCTAAGAAAATTAGA 1659
> Ahg900011 jgi|Araly1|900011|Al_scaffold_0004_661
Length=888
Score = 274 bits (148), Expect = 2e-72
Identities = 225/261 (86%), Gaps = 9/261 (3%)
Strand=Plus/Plus
Query 637 AAGAACGGG---ACTGCTGGAAAAGAGAGtgatgatgatgatgatgatgTGTTGTGTGCT 693
||||||||| ||||||||||| |||||| ||| |||||||||| | | | ||||
Sbjct 622 AAGAACGGGACTACTGCTGGAAAGGAGAGTCCTGACGATGATGATG-CAT-TACT-TGCT 678
Query 694 GTGCGGGATGCGTTTGAGACCACCATGATGTCGCAAGGATTAAGTGATTATCAAAAGAAG 753
|||| |||||| |||||| | | ||||| ||||| |||||||||||||||||||||
Sbjct 679 GTGCAGGATGCATTTGAG---GCTGTAATGTCACAAGGTTTAAGTGATTATCAAAAGAAG 735
Query 754 TTGCAGCTTGAGAAGCTGATGAACCTTGGAACTGGTAAAAGAAGAGAGTTGAGCAATGAA 813
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 736 TTGCAGCTTGAGAAGCTCATGAACCTTGGAACTGGAAAAAGAAGAGAGTTGAGCGATGAA 795
Query 814 TGGAAAGCACTATGTGTTGAGGAACTAAAATTGAATATCAACAAGCTTCGATTTTCCGCC 873
|||||||| ||||||||||||||| |||||||||||||| |||||| ||||||| |||
Sbjct 796 TGGAAAGCGTTATGTGTTGAGGAACGGAAATTGAATATCAAGAAGCTTAGATTTTCTGCC 855
Query 874 AAGCTTGCAGAGGCAGCAAAT 894
|||||||||||||| ||||||
Sbjct 856 AAGCTTGCAGAGGCTGCAAAT 876
Score = 167 bits (90), Expect = 3e-40
Identities = 199/249 (80%), Gaps = 18/249 (7%)
Strand=Plus/Plus
Query 242 GAGCTAAAACAGGACTCGAATCCAAAATTGATTGGGATGCGTTTTATTGTTACGTCA-AA 300
||||||| |||||| || ||||||||||||||||||||||||||||| ||| | || ||
Sbjct 113 GAGCTAAGACAGGATTCCAATCCAAAATTGATTGGGATGCGTTTTATCGTTTCCTCGGAA 172
Query 301 GGTTCCATTCAT-GTGAAAGTT-TCCAAGTGC-CAGCTTATGAGTAAGACCAGGAAGTTG 357
| ||| || | | | |||| || |||||| | ||| || ||||||||| |||||| |||
Sbjct 173 G-TTCAAT-CGTTGCGAAA-TTCTCCAAG-GATCAGGTTTTGAGTAAGATCAGGAAATTG 228
Query 358 AAGAAGAAG-TTCCTTGATCAAATGG-AGAAAATCGATCAAGGAAATGATCCACAT-TTT 414
|| ||| || || |||| ||| ||| |||||||| || |||| |||||||| || |||
Sbjct 229 AA-AAGGAGATTTCTTGTTCAC-TGGGAGAAAATCAATGAAGGGAATGATCC-CAAGTTT 285
Query 415 ACTAGGTCTAGTGAAACTGAAGCTTTTGGATATTCCATGA-TGATTTGGCGT-AAAATTG 472
|||||||||||||| ||||||| ||||||| ||| | | |||||||| | ||||| |
Sbjct 286 ACTAGGTCTAGTGATTCTGAAGCCTTTGGATTTTCT-TCAATGATTTGGGGACAAAAT-G 343
Query 473 ATGCTGAAT 481
| |||||||
Sbjct 344 AAGCTGAAT 352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64486784785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5