BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14290.1
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350576 jgi|Araly1|350576|fgenesh1_pg.C_scaffold_6001169 394 4e-109
> Ahg350576 jgi|Araly1|350576|fgenesh1_pg.C_scaffold_6001169
Length=399
Score = 394 bits (213), Expect = 4e-109
Identities = 272/301 (90%), Gaps = 2/301 (1%)
Strand=Plus/Plus
Query 227 GAAGAAGGTTGGGAGGGGAGATGGAGGTAATGATGCACCAAAAGCATCGAACTTGAGCAA 286
||| |||| ||||| ||||| ||||||| |||| ||||||||||||| || ||||||||
Sbjct 101 GAA-AAGG-TGGGAAGGGAGGTGGAGGTTATGAAGCACCAAAAGCATTGAGTTTGAGCAA 158
Query 287 AGAGATCAAATCGAGTATGGTTGTTAGTGCTAATACTCTGAAAGATGGATTGGACCCTAA 346
|||||||||||| |||| ||||||| ||||||||| |||||||| |||||||||||||||
Sbjct 159 AGAGATCAAATCAAGTACGGTTGTTGGTGCTAATATTCTGAAAGGTGGATTGGACCCTAA 218
Query 347 GATCTTGCCTAATTCAGATCACCCTGATTATTTATGGCATCTGCTTGATAAGCGACCGGC 406
|||||||||| |||||||| || | |||| |||||||||| |||||||||||||||| ||
Sbjct 219 GATCTTGCCTGATTCAGATTACTCAGATTGTTTATGGCATTTGCTTGATAAGCGACCCGC 278
Query 407 GCTTAGCGAACTTAGAAGGAAGAACGTTGAGACTCTTAGTTTTGATGATCTTAAACGTTT 466
||| || | ||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 279 GCTAAGTGGACTTAGAAGGAAGAATGTTGAGACTCTTCCTTTTGATGATCTTAAACGTTT 338
Query 467 TGTGAAGCTGGATACCAGAGCTAGAATCAAGGAGAACCATTCTATCAAGGCCAAGAACTG 526
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 339 TGTGAAGCTGGATACCAGAGCTAGAATCAAGGAGAACAATTCTATCAAGGCCAGGAACTG 398
Query 527 A 527
|
Sbjct 399 A 399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23521839789
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5