BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14300.1
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488267 jgi|Araly1|488267|fgenesh2_kg.6__1401__AT5G14300.1 1114 0.0
> Ahg488267 jgi|Araly1|488267|fgenesh2_kg.6__1401__AT5G14300.1
Length=729
Score = 1114 bits (603), Expect = 0.0
Identities = 682/720 (95%), Gaps = 6/720 (1%)
Strand=Plus/Plus
Query 1 ATGCCTTGGTCAAAGTTCACAAAGGTAGCTCTAGGTCTAGGAGCTGCCATAGCGGCTGTG 60
||||||||| |||||||||||||||| ||||||||| |||||||||||||| |||| |||
Sbjct 1 ATGCCTTGGGCAAAGTTCACAAAGGTGGCTCTAGGTTTAGGAGCTGCCATAACGGCCGTG 60
Query 61 AGATCAACAATGTTCACCGTTGATGGTGGCCAGAGAGCTGTTATGTTCCACCGATTCGAA 120
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGATCAACAACGTACACCGTTGATGGTGGCCAGAGAGCTGTTATGTTCCACCGATTCGAA 120
Query 121 GGGATTCTAGAAGAACCAGTAGGAGAAGGGACACATCGTAAGATTCCGTGGGTGCAAAAG 180
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGGGTTCTAGAGGAACCAGTAGGAGAAGGGACACATCGTAAGATTCCGTGGGTGCAAAAG 180
Query 181 CCGTATATCTTCGACATTCGGACCAAACCCTACAAAATCAA-TACCGACTCTGGAACTAA 239
|| |||||||||||||||||||| | |||||| ||||||| | ||||||||||||||||
Sbjct 181 CCTTATATCTTCGACATTCGGACTAGGCCCTACGAAATCAAGT-CCGACTCTGGAACTAA 239
Query 240 GGATCTTCAGATGGTCAACCTCACACTTCGTGTTATGTTTCGCCCTGATGTGGTT-AAAG 298
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 240 GGATCTTCAGATGGTCAACCTCACACTTCGTGTTATGTTTCGCCCTGATGT-GTTGAAAG 298
Query 299 CGGTGGTGGCTCAGTTCAACGCTGACGAGCTCTTAACAGAACGTCCACAGGTCTCAGCTC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 299 CGGTGGTGGCTCAGTTCAACGCTGACGAGCTCTTAACAGAACGTCCACAGGTCTCGGCTC 358
Query 359 TTATACGCGAAACGTTGATCAAGCGAGCTAAGGAGTTCAACATTGTTCTCGATGACGTGT 418
||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 359 TTATACGTGAAACGCTGATCAAGCGAGCTAAGGAGTTCAACATAGTTCTCGATGACGTGT 418
Query 419 CGATCACTGG-TCTCTCATACGGTAAAGAGTTCTCACTTGCGGTGGAGCGGAAGCAGGTG 477
||||||| || |||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 419 CGATCAC-GGATCTCTCCTACGGTAAAGAGTTCTCGCTTGCGGTGGAGCGGAAGCAGGTG 477
Query 478 GCACAGCAAGAAGCTGAGCGGTCCAAGTTCGTAGTGGCAAAGGCTGATCAGGAGAGACGA 537
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GCGCAGCAAGAAGCTGAGCGGTCCAAGTTCGTAGTGGCAAAGGCTGATCAGGAGAGACGA 537
Query 538 GCGGCTGTGATTAGAGCAGAAGGAGAGAGCGAGGCGGCTCGGGTTATATCGAAAGCGACT 597
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 538 GCGGCTGTGATTAGAGCAGAAGGAGAGAGCGAGGCAGCTCGGGTTATATCGAAAGCGACT 597
Query 598 GCAGGGGCTGGGATGGGGTTGATCAAGCTCAGAAGGGTCGAGGCGGCTAGAGAGGTTGCG 657
|||| |||||||||||||||||| |||| || ||| |||||||||||||||||||||||
Sbjct 598 GCAGAGGCTGGGATGGGGTTGATTGAGCTTAGGAGGATCGAGGCGGCTAGAGAGGTTGCG 657
Query 658 ATTACGCTCTCTAATTCTCCCAATGTCGTCTATTTGCCAAGTGGTGGGAATATGTTGTTT 717
|||||||||||||| ||||||||||| |||||||||||||||| |||||||||| |||||
Sbjct 658 ATTACGCTCTCTAACTCTCCCAATGTTGTCTATTTGCCAAGTGATGGGAATATGCTGTTT 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27639114825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5