BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14310.1
Length=1808
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488268 jgi|Araly1|488268|fgenesh2_kg.6__1402__AT5G14310.1 2575 0.0
Ahg484517 jgi|Araly1|484517|fgenesh2_kg.5__509__AT3G27320.1 520 2e-146
> Ahg488268 jgi|Araly1|488268|fgenesh2_kg.6__1402__AT5G14310.1
Length=1735
Score = 2575 bits (1394), Expect = 0.0
Identities = 1513/1569 (96%), Gaps = 13/1569 (1%)
Strand=Plus/Plus
Query 249 AAAAATCTGGTCTTTTCTGGAGGGAAATGCCAGGGGTAGCTGTGAAGCTCTATAGCGTCT 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 AAAAATCTGGTCTTTTCTGGAGGGAAATGCCAGGGGTAGCTGTGAAGCTCTATAGCGTCT 230
Query 309 TCTTTAAGTTACTATTGAAACATCGTCTTCAGAATCTGATTTCAATTTCAGCTGCTGATG 368
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TCTTTAAGTTACTTTTGAAACATCGTCTTCAGAATCTGATTTCAATTTCAGCTGCTGATG 290
Query 369 GCTTATCTGATTCCTTTGGTGTTTCGACCCGATCCGATGAATCCGTCGCCGCCGCGAATC 428
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GGTTATCTGATTCGTTCGGTGTTTCGACCCGATCCGATGAATCCGTCGCCGCCGCGAATC 350
Query 429 CGTCTTTCACCGACGGTGTTGCCACCAAAGATATACACATTGATCCAATGACGTCACTCA 488
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 351 CGTCTTTCACCGACGGTGTTGCGACCAAAGATATTCACATTGATCCAATGACGTCACTCA 410
Query 489 CCGTAAGGATCTTTCTTCCCGAATCTGCTCTTTCTCCA---GAACCAGATTCGTTACGCC 545
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 411 CCGTAAGGATCTTTCTTCCTGAATCTGCTCTTTCTCCACCTGAACCAGATTCGTTACGCC 470
Query 546 ACAAGGATAATTATAACCACCAACCCAGATCTGATCGGAGACATAGCTATGGCCCTAATC 605
|||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 ACAAGGATCATTTTCACCACCAACCCAGATCTGATCGGAGACATAGCTATGGCCCTAATC 530
Query 606 ATAACTCTCCGGCACCGGCGGAGAGGAACGAATCTCGAAGGAACAGCTATGGTTGCAACA 665
||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 531 ATAACTCTCCGGCACTGGCGGAGAGGAATGAATCTCGAAGGAACAGCTATGGATGCAACA 590
Query 666 ACGAGAATCTAGAACCTTATGGTGGATATGCGCCATCTGCGAAGAGGAATTCTCGGAAAC 725
|||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 591 ACGAGAATCTAGTACCGTATGGAGGATATGCGCCATCTGCGAAGAGGAATTCTCGGAAAC 650
Query 726 TACCAGTGATGTTGCAGTTTCATGGTGGAGGTTGGGTTAGTGGAAGTTCTGATTCGGCTG 785
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 651 TACCAGTGATGTTGCAGTTTCACGGTGGTGGTTGGGTTAGTGGAAGTTCTGATTCGGCGG 710
Query 786 CTAATGACTTCTTTTGCCGGAGAATTGCTAAAGTCTGTGATGTCATTGTATTGGCCGTTG 845
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 711 CTAATGACTTCTTTTGCCGGAGAATTGCTAAAGTATGTGATGTGATTGTATTGGCCGTTG 770
Query 846 GTTATAGGCTTGCGCCTGAGAATAGGTACCCTGCGGCGTTTGAGGATGGAGTCAAAGTGC 905
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 771 GTTATAGGCTTGCGCCTGAGAATCGGTATCCTGCGGCGTTTGAGGATGGAGTCAAAGTGC 830
Query 906 TTCATTGGCTTGGGAAACAGGCTAATCTAGCTGATTGTTGTAAGTCTTTGGGTAATCGAC 965
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 831 TGAATTGGCTTGGGAAACAGGCTAATCTAGCTGAATGTTGTAAGTCTTTGGGTAATCGAC 890
Query 966 GTGTCAATGGCGTTGAGGTTAAGAAGTTGAATGTTCAAGGACAGATTGTGGATGCTTTTG 1025
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 GCGTCAATGGCGTTGAGGTTAAGAAGTTGAATGTTCAAGGACAGATTGTGGATGCTTTTG 950
Query 1026 GAGCTTCCATGGTTGAGCCTTGGTTGGCTGCTCACGCCGATCCTTCCAGATGTGTTCTTC 1085
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 951 GAGCTTCCATGGTTGAGCCTTGGTTGGCAGCTCACGCCGATCCTTCCAGATGTGTTCTTC 1010
Query 1086 TCGGGGTGAGCTGTGGTGGGAACATAGCAGACTATGTAGCTCGGAAAGCAGTGGAAGCTG 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TCGGGGTGAGCTGTGGTGGGAACATAGCAGACTATGTAGCTCGGAAAGCAGTGGAAGCTG 1070
Query 1146 GGAAACTTCTAGAACCGGTGAAAGTTGTTGCACAGGTTCTAATGTACCCCTTTTTCATTG 1205
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1071 GGAAACTTCTAGAACCGGTGAAAGTTGTTGCACAGGTTCTAATGTACCCGTTTTTCATTG 1130
Query 1206 GAAACAACCCAACACAGTCCGAAATAAAGCTGGCAAACTCTTACTTCTACGATAAGCCTG 1265
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1131 GAAACAACCCAACACAGTCCGAAATAAAGCTGGCAAACTCTTACTTGTACGATAAGCCTG 1190
Query 1266 TCTCTGTTCTAGCCTGGAAACTCTTCTTACCAGAGAAAGAGTTCGACTTTGACCACCCGG 1325
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TCTCTGTTCTCGCCTGGAAACTCTTCTTACCAGAGAAAGAGTTCGACTTTGACCACCCGG 1250
Query 1326 CAGCAAACCCACTTGCCCATAACCGCAGTGGACCACCTCTGAAGCTAATGCCTCCAACAC 1385
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1251 CAGCAAACCCACTTGCCCATAACCGCAGTGGACCACCTTTGAAGCTAATGCCTCCAACAC 1310
Query 1386 TTACAGTAGTAGCTGAGCATGACTGGATGAGAGACCGAGCCATTGCTTATTCAGAAGAGC 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 TTACAGTAGTAGCTGAGCATGACTGGATGAGAGACCGAGCCATTGCTTATTCAGAAGAGC 1370
Query 1446 TTAGAAAGGTAAACGTAGATTCTCCAGTTTTAGAATACAAAGACGCAGTTCATGAGTTTG 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TTAGAAAGGTAAACGTAGATTCTCCAGTTTTAGAATACAAAGACGCAGTTCATGAGTTTG 1430
Query 1506 CTACACTTGATATGCTTCTCAAGACTCCTCAGGCACAGGCCTGCGCCGAAGATATTGCCA 1565
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 CAACACTTGATATGCTTCTCAAGACTCCTCAGGCACAGGCCTGCGCCGAAGATATTGCCA 1490
Query 1566 TTTGGGTCAAGAAATACATTTCACTCCGCGGCCATGAGTTCTCTTACTGAAAATTTTTAC 1625
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1491 TTTGGGTCAAGAAATACATTTCAATCCGCGGCCATGAATTCTCTTACTGAAAATTTTTAC 1550
Query 1626 CCTGTTATTATT---CATTTTCTTCCttttttttGTGTGATAGCAAGATTTTCTGGGTAG 1682
|||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1551 CCTGTTATTATTATTCATTTTCTTCCTATTTTT-GTGTGATAGCAAGATTTCCTGGGTAG 1609
Query 1683 GATT-AGAGACAATCCAAGATCGAGTCTTTTGGCAAAAGCTATAAAATTTTATTTTTTGG 1741
|||| |||||| ||||||||| ||||||||| ||||| | ||| |||||| |||||||||
Sbjct 1610 GATTTAGAGACGATCCAAGATGGAGTCTTTTTGCAAA-GTTATCAAATTT-ATTTTTTGG 1667
Query 1742 --TTACTTATGTATTCATATGTACGTATTCTGAATAAACCATTTTTGGTTCGACCAAATT 1799
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1668 GGTTAATTATGTATTCATATGTACGTATTCTGAATAAACCATTTT-GGTTCGACCAAATT 1726
Query 1800 TTCAAGTTT 1808
|||||||||
Sbjct 1727 TTCAAGTTT 1735
> Ahg484517 jgi|Araly1|484517|fgenesh2_kg.5__509__AT3G27320.1
Length=1671
Score = 520 bits (281), Expect = 2e-146
Identities = 708/911 (78%), Gaps = 41/911 (5%)
Strand=Plus/Plus
Query 722 AAACTACCAGTGATGTTGCAGTTTCATGGTGGAGGTTGGGTTAGTGGAAGTTCTGATTCG 781
|||||||| |||||| |||||||||||||||| |||||||| ||||||||| ||| ||
Sbjct 556 AAACTACCTGTGATGCTGCAGTTTCATGGTGGTGGTTGGGTAAGTGGAAGTAATGACTCA 615
Query 782 GCT-GCTAATGACTTCTTT-TGCCGGAGAATTGCTAAAG-TCTGTGATGTCATTGTATTG 838
| | |||||||| || ||| || | || || || ||| ||||||| ||||||| |||
Sbjct 616 G-TGGCTAATGA-TTTTTTCTGTAGAAGGATGGC-GAAGCACTGTGATATCATTGTTTTG 672
Query 839 GCCGTTGGTTATAGGCTTGCGCCTGAGAATAGGTACCCTGCGGCGTTTGAGGATGGAGTC 898
|| || || || |||||||||||||||||| |||| || || |||| |||||| || ||
Sbjct 673 GCAGTCGGGTACAGGCTTGCGCCTGAGAATCGGTATCCGGCTGCGTATGAGGACGGTTTC 732
Query 899 AAAGTGCTT-CATTGGCTTGGGAAACAGGCTAATCTAGCTGATTGTTGTAAGTCTTTGGG 957
|| ||| || | ||||| ||||| ||||| ||| | ||||| ||| |||||| ||||
Sbjct 733 AAGGTG-TTGAAATGGCTGGGGAAGCAGGCGAATTTGGCTGAATGTAATAAGTCGATGGG 791
Query 958 TAA-TCGAC-GTGTCAATGGCGTTGAGGTTAAGAAGT-TGAATGTTCAAGGA-CAGATTG 1013
|| ||| | | | | || | ||| || ||||| | ||| | | || | || ||||
Sbjct 792 AAATTCG-CGGCGAC-CGGGAGGTGAAGTGAAGAAATCAGAA-G-TGAATAAGCATATTG 847
Query 1014 TGGATGCTTTTGGAGCTTCCATGGTTGAGCCTTGGTTGGCTGCTCACGCCGATCCTTCCA 1073
| ||||||||||| ||||| |||| ||||||||| | || |||| || |||||||| |
Sbjct 848 TTGATGCTTTTGGTGCTTCTTTGGTGGAGCCTTGGCTCGCAACTCATGCTGATCCTTCGA 907
Query 1074 GATGTGTTCTTCTCGGGGTGAGCTGTGGTGGGAACATAGCAGACTATGTAGCTCGGAAAG 1133
||||||| ||||| || ||||||||||||| || ||||||||||||||||| || ||||
Sbjct 908 GATGTGTGCTTCTTGGTGTGAGCTGTGGTGCCAATATAGCAGACTATGTAGCCCGTAAAG 967
Query 1134 -CAGTGGAAGCTGG-GAAACTTCTAGAACCGGTGAAAGTTGTTGCACAGGTTC-TAATGT 1190
|| | |||||||| ||| |||||| || || || ||||| || || | || ||||||
Sbjct 968 CCA-TTGAAGCTGGTCAAA-ATCTAGATCCTGTCAAGGTTGTGGCTCAAG-TCTTAATGT 1024
Query 1191 ACCCCTTTTTCATTGG-AAACAACCCAACACAGTCCGAAAT-AAAGCTGGCAAACTCTTA 1248
|||| || |||||||| | ||| |||||||| || || ||| | |||||| || ||
Sbjct 1025 ACCCGTTCTTCATTGGTAGTGTTCCC-ACACAGTCTGAGATCAAA-CAGGCAAATTCCTA 1082
Query 1249 CTTCTACGATAAGCCTGTCT-CTGTTCTAGCCTGGAAACTCTTCTTA-CCAGAGAAAGAG 1306
||||||||| || ||| | | | |||| || ||||| || || ||| ||| || ||||
Sbjct 1083 CTTCTACGACAAACCTATGTGC-ATTCTCGCTTGGAAGCTTTTTTTACCCAAAG-AAGAA 1140
Query 1307 TTCGA-CTTTGACCACCCGGCAGCAAACCCACTTG-CCCATAACCGCAGTGGACCACCTC 1364
||| | | | |||||||||||||||||||| |||| ||| ||| | || ||||| |
Sbjct 1141 TTC-AGCCTAGACCACCCGGCAGCAAACCCCCTTGTTCCA-GGCCG-A--GGTCCACCAC 1195
Query 1365 TGAAGCTAATGCCTCCAACACTTA-CAGTAGTAGCTGAGCATGACTGGATGAGAGACCGA 1423
| ||| | ||||| |||||||| | || | || || ||||||||||||||||||||||||
Sbjct 1196 TCAAGTTCATGCCACCAACACTAACCA-TTGTCGCAGAGCATGACTGGATGAGAGACCGA 1254
Query 1424 GCCATTGCTTATTCAGAAGAGCTTAG-AAAGGTAAACGTAGATTCTCCAGTTTTAGAATA 1482
|||||||| || ||||||||||| || |||| ||| |||||| |||| || |||| ||
Sbjct 1255 GCCATTGCATACTCAGAAGAGCTAAGGAAAGTTAAT-GTAGATGCTCCCGTGCTAGAGTA 1313
Query 1483 CAAAGACGCAGTTCATGAGTTTGCTACACTTGATATGCTTCTCAAGACTCCTCAGGCACA 1542
||||| || || || ||||||||||| || ||||||||||| | |||||| || || ||
Sbjct 1314 TAAAGATGCGGTCCACGAGTTTGCTACCCTCGATATGCTTCTTAGGACTCCACAAGCTCA 1373
Query 1543 GGCCTGCGCCGAAGATATTGCCATTTGGGTCAAGAAATACATTTCACTCCGCGGCCATGA 1602
||| || || ||||||||||| ||||||| |||||||||||| || || || || || ||
Sbjct 1374 GGCTTGTGCAGAAGATATTGCAATTTGGGCCAAGAAATACATCTCTCTTCGTGGTCACGA 1433
Query 1603 GTTCTCTTACT 1613
|||||| ||||
Sbjct 1434 GTTCTCATACT 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67876816590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5