BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14360.1
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488276 jgi|Araly1|488276|fgenesh2_kg.6__1410__AT5G14360.1 966 0.0
> Ahg488276 jgi|Araly1|488276|fgenesh2_kg.6__1410__AT5G14360.1
Length=598
Score = 966 bits (523), Expect = 0.0
Identities = 580/606 (96%), Gaps = 10/606 (2%)
Strand=Plus/Plus
Query 29 aaagtagaaagaaaTGATGAAGTTTAAGACCAAGAGGTTTGGGATTAGATTTGGATTTGG 88
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 AAAGTAGAAAGATATGATGAAGTTTAAGTCCAAGAGGTTTGGGATTAGATTTGGATTTGG 60
Query 89 TAAAAGAATcaacaacaaaggcacacaacaagatcaacaacaaaagggagttggtaacaa 148
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TAAAAGAATCAACAACAAAGGCACACAACAAGATCAACAACAAAAGGGAGTTAGTAACAA 120
Query 149 caacaacaaTAGTAGCTGCAGCAACTGTGAGATCAAATGGGAACTTAGGCCAGGAGGCAT 208
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CAACAA---TAGTAGCTCCAGCAACTATGAGATCAAATGGGAACTTAGGCCAGGAGGCAT 177
Query 209 GCTTGTTCAAAAAAGACAAGAGAGTATTGGTGAAGACTTGATCTCCATTAGAGTCTCTAC 268
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GCTTGTTCAAAAACGACAAGAGAGTATTGGTGAAGACTTGATCTCCATTAGAGTCTCTAC 237
Query 269 TTTTGCTCATTTTCATGATCTTTCCATTGAAGCCACCTCCACTTTTGGAGAACTTAAGAT 328
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTTTGCTCACTTTCATGATCTCTCCATTGAAGCCACCTCCACTTTTGGAGAACTTAAGAT 297
Query 329 GGTATTATCATTGCTTACCGGTTTAGAGCCAAAACAACAAAGGCTAGTATTCAAAGGGAA 388
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 298 GGTATTATCATTGCTTACCGGTTTAGAGCCAAAACAACAAAGGCTATTATTCAAAGGGAA 357
Query 389 AGAAAGAGAGGATCATGAATATCTACACATGGTTGGTGTTGGGGATAAAGACAAAGTGTT 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 358 AGAAAGAGAGGATCATGAATATCTACACATGGTTGGTGTTGGGGATAAAGACAAAGTATT 417
Query 449 GTTGTTAGAAGATCCTGGCTTCAAAGATAAAAAGCTTCTTGATCTTAACAGCATTTCCAC 508
||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 418 GTTGTTAGAAGATCCTGCCTTCAAAGATAAAAAGCTTCTAGATCTTAACAACATTTCCAC 477
Query 509 -TACTTGTCCGACTATAATCGTATAAACAAAACTAAACAAAATTGTCAAATTAGTTGTTT 567
| ||||||| | ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 478 AT-CTTGTCC--C-ATAATCGTATAAACACAACTAAACAAATTTGTCAAATTAGTTGTTT 533
Query 568 TGTCAATTTCTTTGTGAAATAATATCAC-TCAAGAAAATTAACTATAGCTATGGTTGTCA 626
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 534 -GTCAATTTCTTTGTGAAATAATATCACATCAAGAAAATTAACTATAGCTATGATTGTCA 592
Query 627 TGAATT 632
||||||
Sbjct 593 TGAATT 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23216856453
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5