BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14370.1
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488277 jgi|Araly1|488277|fgenesh2_kg.6__1411__AT5G14370.1 1845 0.0
> Ahg488277 jgi|Araly1|488277|fgenesh2_kg.6__1411__AT5G14370.1
Length=1298
Score = 1845 bits (999), Expect = 0.0
Identities = 1225/1328 (92%), Gaps = 40/1328 (3%)
Strand=Plus/Plus
Query 1 ACAAAACTTAGAAAGCAGAGAAGAGTTAAAGTGTTagagagagagagagacagagaTCGG 60
||||||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 1 ACAAAACTTAGAAAGCAGAGAAGAGTT-AAGTGTT--------AGAGAG--AGAGATCGG 49
Query 61 AGATGTGTAGCAACAAAGCAAGTCCGGTCGTCGgagaagaaaaacagagtacgagatcat 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 50 AGATGTGTAGCAACAAAACAAGTCCGGTCGTCGGAGAAGAAAAACAGAGTACGAGAACAT 109
Query 121 cgaagaggatcaagaagagaaaaaacagagaagCTACCACCACCATGGAGGATAAGTCTT 180
| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 110 CAAAGAGGATCAAGAAGAGAAAAAACAGAGAAGCTACCATCACCATGGAGGAAAAGTCTC 169
Query 181 CTTCCAATCTTGACGCGTCTCGTAAGATCAGAACaaaaacgaaaaaaCCCAAATTTCTCA 240
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 170 CTTCCAATCTTGACGCGTCTCGTAAGATCAGAACAAAAACCAAAAAACCTAAATTTCTCA 229
Query 241 GTCTCAAGCTCGAGCTCAACACTTCTCACGAGATCAACGAGAATCCCagaag-caagaag 299
||||||||||||| |||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 230 GTCTCAAGCTCGAACTCAACACTTCTCACGAGATCAACGAGAATTCCAG-AGCCAAGAAG 288
Query 300 agcaagaagaagaacaacaacaaaaaacagagcaagaagaaagaacCGGATACGACGCCG 359
|||||||||||| || || |||||||||||||||||||||||||| ||||||||||||
Sbjct 289 AGCAAGAAGAAG---AAGAATAAAAAACAGAGCAAGAAGAAAGAACCTGATACGACGCCG 345
Query 360 TTTaaggagaagaagagagcagagactactactacactggggggaggagagaaagaagaa 419
||||| |||||||||||||||||||||||| || | || ||||||||||||||||||
Sbjct 346 TTTAAAGAGAAGAAGAGAGCAGAGACTACT-CT---C--GGAGGAGGAGAGAAAGAAGAA 399
Query 420 gagCAATACGACACCGTTGCAGCTTACCTCTTCAATTCCGCCACCGACAGTACAATTTCT 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GAGCAATACGACACCGTCGCAGCTTACCTCTTCAATTCCGCCACCGACAGTACAATTTCT 459
Query 480 TCGATCCACGATCTCCTCCCTTCCTCCGCGGCCACCGATGTAGATTGCGGCGGAGAAAGG 539
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 460 TCGATCCACGATCTCCTCCCTTCCTCCGCCGCCACCGATGTAGATTGCGGCGGAGAAAGG 519
Query 540 AATAATCTTTCTCCGTATGATCGTCAAGACCACGGATCGTCGTCGTCTTCCCTTCTAagg 599
|||||||| |||||||| ||||||| || || ||||||||||| ||||| ||||||| |
Sbjct 520 AATAATCTCTCTCCGTACGATCGTCGGGAGCATGGATCGTCGTCTTCTTCTCTTCTAAAG 579
Query 600 acggcgatgaggaaaggagcgagcgaggaggaggagacgacggaggagcgGTGGGTGAGT 659
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 ACAGCGATGAGGAAAGGAGCGAGCGAGGAGGAGGAGACGACGGAGGAGCGGTGGGTGAGT 639
Query 660 TATTCAGAGGTTGTGGAGGAAGTGATGAGTCGGAGCGGGACTCCACGTTGTTGCGGCGGA 719
||||||||||||||||| || ||||||||||||||||| |||||||| |||| |||||
Sbjct 640 TATTCAGAGGTTGTGGAAGAGGTGATGAGTCGGAGCGGAACTCCACGGTGTT---GCGGA 696
Query 720 GGCGATGGAAACGATGGCCGGCCTTCGTTGGCTCTGAAGCTTGATTATGAGCAGATCATG 779
||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||
Sbjct 697 GGCGATGGAAACGATGGACGACCTTCGTTGGCTTTGAAGCTTGATTATGAGCAGATCATG 756
Query 780 GAGGCTTGGTCGGATAAAGGTACGCTTTATGTCGACGGAGAACCGCCGCAGACAGTGCCG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 757 GAGGCTTGGTCGGATAAAGGTACGCTTTATGTCGACGGAGAACCGCCGCAGACGGTGCCG 816
Query 840 GACTTGCATGCTTCCGCTGATGGGTTTAATGACGGCGGAGAGGCGGGGAATTTATGGGCA 899
||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 817 GACTTGCATGCTTCCACTGATGGGTTTACTGACGGCGGAGAGGCCGGGAATTTATGGGCA 876
Query 900 GTGCCGGAGATGGAAACGACGGAGAGGTTATGGAGAGGGCATAGAGAAGCCAGCTTGCTC 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 GTGCCGGAGATGGAAACGACGGAGAGGTTATGGAGAGGGCATAGAGAAGCCAGCTTGCTT 936
Query 960 CGGTATAAAGAGAAACGGCAAAACCGTCTTTTCTCTAAGCGGATTCGATATCAAGTTCGT 1019
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 CGGTATAAAGAGAAACGACAAAACCGTCTTTTCTCTAAGCGGATTCGATATCAAGTTCGT 996
Query 1020 AAACTCAATGCCGAGAAACGTCCTCGTGTTAAAGGCCGGTTTGTAAAAAGAGAGGATTCA 1079
|||||||| || |||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 997 AAACTCAACGCTGAGAAACGTCCTCGTGTTAAAGGCCGGTTTGTGAAGAGAGACGATTCG 1056
Query 1080 TAAACCAC--------CTAAGTGACGGATGTTTAGTATT-TCATGATATTGCTATTTTGT 1130
|||||||| ||||||||||||||||| |||| | ||||||||| ||||| ||
Sbjct 1057 TAAACCACTAAAAAAGCTAAGTGACGGATGTTTGGTATAAT-ATGATATTGTTATTTGGT 1115
Query 1131 GACTTGTTGAGAAGTTAAGGCTCAACCGGAGTATACCGAGAACTGAAGATGATATTGGTC 1190
|||| ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1116 AACTTTTTGAGAAGTTAGGGCTCAACCGGAGCATACCGAGATTTGAAGATGATATTGGTC 1175
Query 1191 TGTATAGGGGTCTTGACCAGCTCGGTTATGCAAAAGTTTCGGTTTTGTTTGGCCGCCTAG 1250
|||||||||||||||||||||| |||||||||||| ||||||||||||||||| || |
Sbjct 1176 TGTATAGGGGTCTTGACCAGCTTGGTTATGCAAAAATTTCGGTTTTGTTTGGCTGC--A- 1232
Query 1251 CTTTGGTTCTCTTATTAGAAAAGTCAACTAATTTGTACCAAATCATCTGAACAATAATGA 1310
|| | |||||||||||||||||| |||||||||| ||||||||||||| ||||||||||
Sbjct 1233 -TTAG-TTCTCTTATTAGAAAAGTTAACTAATTTGCACCAAATCATCTGGACAATAATGA 1290
Query 1311 TAATAAAA 1318
||||||||
Sbjct 1291 TAATAAAA 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5