BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14380.1 Length=880 Score E Sequences producing significant alignments: (Bits) Value Ahg488278 jgi|Araly1|488278|fgenesh2_kg.6__1412__AT5G14380.1 1085 0.0 > Ahg488278 jgi|Araly1|488278|fgenesh2_kg.6__1412__AT5G14380.1 Length=851 Score = 1085 bits (587), Expect = 0.0 Identities = 786/876 (90%), Gaps = 38/876 (4%) Strand=Plus/Plus Query 1 ATCCTAAAGCTTTTGCAGTATTTCTCCATAGAATAAGaaaaataaaacaaaaataaat-a 59 |||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| | Sbjct 1 ATCCTAAAGCTTTTGCAGTATTTCTCTATAGAATAAGAAAAATAAAAC-AAAA-AAATAA 58 Query 60 aa-taaaaaataCTGCTTTAGCTTTTGGAGTATCCTCCTTTTAATCTCAATaaaaaaact 118 || ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 59 AATTAAAAAATACTGCTTTAGCTTTTGGAGTATCCTCCTTTTAATCTC---------A-- 107 Query 119 attaaaacagaaaaaaaaaTGGCACGTCAATTTGTCGTTTTGGTTCTATTGACTTTAACT 178 | | | |||||||||||||||| |||||||||||||||| |||||| ||||||| Sbjct 108 A-T-----A-AAAAAAAAATGGCACGCCAATTTGTCGTTTTGGCCCTATTGGCTTTAACC 160 Query 179 ATCGCCACCGCTTTCGCCGCCGACGCTCCCTCAGCTTCTCCCAAAAAATCTCCATCACCC 238 ||||||| || ||||||||| |||||||| |||||||| ||||||||||||||||||||| Sbjct 161 ATCGCCAGCGTTTTCGCCGCTGACGCTCCATCAGCTTCCCCCAAAAAATCTCCATCACCC 220 Query 239 ACTGCCGCACCAACCAAGGCTCC-GACTGCCACAACCAAGGCTCCTTCAGCTCCAACCAA 297 || ||| |||||||||||||||| | | ||| ||||||||||||| ||||||||||||| Sbjct 221 ACCGCCACACCAACCAAGGCTCCTG-CAGCCCCAACCAAGGCTCCGGCAGCTCCAACCAA 279 Query 298 GGCTCCAGCCGCCGCACCTAAATCATCTTCGGCCTCTTCTCCAAAAGCATCTTCTCCGGC 357 |||||| || ||||||||||||||||| |||||||||||||| ||||||||||| || || Sbjct 280 GGCTCCGGCTGCCGCACCTAAATCATCCTCGGCCTCTTCTCCCAAAGCATCTTCCCCTGC 339 Query 358 TGCCGAAGGACCCGTCCCCGAGGATGACTACTCTGCCTCTAGTCCTAGCGACTCTGCTGA 417 ||| |||||||| |||||||| ||||||||||||||||| |||||||| ||||| || || Sbjct 340 TGCTGAAGGACCAGTCCCCGATGATGACTACTCTGCCTCCAGTCCTAGTGACTCCGCCGA 399 Query 418 GGCACCTACCGTCTCCTCCCCACCGGCTCCCACCCCCGACAGCACTTCCGCCGCTGATGG 477 ||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||| Sbjct 400 GGCACCTACTGTCTCCTCCCCACCGGCTCCCACCCCTGACAGCACCTCCGCTGCTGATGG 459 Query 478 ACCAAGCGATGGACCCACTGCAGAGTCACCCAAGAGTGGTGCCGTGACAACTGCTAAGTT 537 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 460 ACCAAGCGATGGACCCACTGCGGAGTCACCCAAGAGTGGTGCCGTGACAACCGCTAAGTT 519 Query 538 CTCTGTTGTCGGCACAGTCGCCACCGTCGGCTTCTTCTTCTTTTCTTTCTAAGTTAAGTC 597 || ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| | Sbjct 520 CTGTGTTGTCGGCACAATCGCCGCCGTCGGATTCTTCTTCTTTTCTTTCTAAGTTAAATT 579 Query 598 GTCCACGTTTTGGTTGGATGGATCAGAGATTTGTATAATCTTTTGAGTTGAGGCCGTAAA 657 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 580 GTCCACGTTTTGCTTGGATGGATCAGAGATTTGTATAATCTTTTGAGTTGAGGCAGTAAA 639 Query 658 TTTATTTTATATATACGTTTATAAATCGAGATTAATTGGAGTAAATATAAACCTAAATGT 717 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 640 TTTATTTTATATATACGTTTATAAATCGAGATTAACTGGAGTAAATATAAACCTAAATGT 699 Query 718 CATTTTGAAATTTGGTTAGAACAAAT-TTTCATATTTTGTTTAATAAAC-TTAttttttt 775 | || |||||||| |||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 700 CGTTATGAAATTTTGTTAGAACAAATGTTTCATATTTTGTTTAATAAAAATTATTTTTT- 758 Query 776 tGGAAATGCTTATGATT-TGTGTGGTCTAATGGTCTTTTAGTTCCTATTGTCATGTGTTG 834 |||||||| ||||||| | |||||||||||| ||||||||||||||||||||| ||||| Sbjct 759 -GGAAATGCATATGATTCT-TGTGGTCTAATG-TCTTTTAGTTCCTATTGTCATATGTTG 815 Query 835 TGAAT---T----AGATATCATGAATGATATAAATG 863 ||||| | ||||||||| ||||||||||||| Sbjct 816 TGAATGAATGTGTAGATATCATAAATGATATAAATG 851 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32595094035 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5