BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14380.1
Length=880
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488278 jgi|Araly1|488278|fgenesh2_kg.6__1412__AT5G14380.1 1085 0.0
> Ahg488278 jgi|Araly1|488278|fgenesh2_kg.6__1412__AT5G14380.1
Length=851
Score = 1085 bits (587), Expect = 0.0
Identities = 786/876 (90%), Gaps = 38/876 (4%)
Strand=Plus/Plus
Query 1 ATCCTAAAGCTTTTGCAGTATTTCTCCATAGAATAAGaaaaataaaacaaaaataaat-a 59
|||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| |
Sbjct 1 ATCCTAAAGCTTTTGCAGTATTTCTCTATAGAATAAGAAAAATAAAAC-AAAA-AAATAA 58
Query 60 aa-taaaaaataCTGCTTTAGCTTTTGGAGTATCCTCCTTTTAATCTCAATaaaaaaact 118
|| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 59 AATTAAAAAATACTGCTTTAGCTTTTGGAGTATCCTCCTTTTAATCTC---------A-- 107
Query 119 attaaaacagaaaaaaaaaTGGCACGTCAATTTGTCGTTTTGGTTCTATTGACTTTAACT 178
| | | |||||||||||||||| |||||||||||||||| |||||| |||||||
Sbjct 108 A-T-----A-AAAAAAAAATGGCACGCCAATTTGTCGTTTTGGCCCTATTGGCTTTAACC 160
Query 179 ATCGCCACCGCTTTCGCCGCCGACGCTCCCTCAGCTTCTCCCAAAAAATCTCCATCACCC 238
||||||| || ||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 161 ATCGCCAGCGTTTTCGCCGCTGACGCTCCATCAGCTTCCCCCAAAAAATCTCCATCACCC 220
Query 239 ACTGCCGCACCAACCAAGGCTCC-GACTGCCACAACCAAGGCTCCTTCAGCTCCAACCAA 297
|| ||| |||||||||||||||| | | ||| ||||||||||||| |||||||||||||
Sbjct 221 ACCGCCACACCAACCAAGGCTCCTG-CAGCCCCAACCAAGGCTCCGGCAGCTCCAACCAA 279
Query 298 GGCTCCAGCCGCCGCACCTAAATCATCTTCGGCCTCTTCTCCAAAAGCATCTTCTCCGGC 357
|||||| || ||||||||||||||||| |||||||||||||| ||||||||||| || ||
Sbjct 280 GGCTCCGGCTGCCGCACCTAAATCATCCTCGGCCTCTTCTCCCAAAGCATCTTCCCCTGC 339
Query 358 TGCCGAAGGACCCGTCCCCGAGGATGACTACTCTGCCTCTAGTCCTAGCGACTCTGCTGA 417
||| |||||||| |||||||| ||||||||||||||||| |||||||| ||||| || ||
Sbjct 340 TGCTGAAGGACCAGTCCCCGATGATGACTACTCTGCCTCCAGTCCTAGTGACTCCGCCGA 399
Query 418 GGCACCTACCGTCTCCTCCCCACCGGCTCCCACCCCCGACAGCACTTCCGCCGCTGATGG 477
||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 400 GGCACCTACTGTCTCCTCCCCACCGGCTCCCACCCCTGACAGCACCTCCGCTGCTGATGG 459
Query 478 ACCAAGCGATGGACCCACTGCAGAGTCACCCAAGAGTGGTGCCGTGACAACTGCTAAGTT 537
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 460 ACCAAGCGATGGACCCACTGCGGAGTCACCCAAGAGTGGTGCCGTGACAACCGCTAAGTT 519
Query 538 CTCTGTTGTCGGCACAGTCGCCACCGTCGGCTTCTTCTTCTTTTCTTTCTAAGTTAAGTC 597
|| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| |
Sbjct 520 CTGTGTTGTCGGCACAATCGCCGCCGTCGGATTCTTCTTCTTTTCTTTCTAAGTTAAATT 579
Query 598 GTCCACGTTTTGGTTGGATGGATCAGAGATTTGTATAATCTTTTGAGTTGAGGCCGTAAA 657
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 580 GTCCACGTTTTGCTTGGATGGATCAGAGATTTGTATAATCTTTTGAGTTGAGGCAGTAAA 639
Query 658 TTTATTTTATATATACGTTTATAAATCGAGATTAATTGGAGTAAATATAAACCTAAATGT 717
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 640 TTTATTTTATATATACGTTTATAAATCGAGATTAACTGGAGTAAATATAAACCTAAATGT 699
Query 718 CATTTTGAAATTTGGTTAGAACAAAT-TTTCATATTTTGTTTAATAAAC-TTAttttttt 775
| || |||||||| |||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 700 CGTTATGAAATTTTGTTAGAACAAATGTTTCATATTTTGTTTAATAAAAATTATTTTTT- 758
Query 776 tGGAAATGCTTATGATT-TGTGTGGTCTAATGGTCTTTTAGTTCCTATTGTCATGTGTTG 834
|||||||| ||||||| | |||||||||||| ||||||||||||||||||||| |||||
Sbjct 759 -GGAAATGCATATGATTCT-TGTGGTCTAATG-TCTTTTAGTTCCTATTGTCATATGTTG 815
Query 835 TGAAT---T----AGATATCATGAATGATATAAATG 863
||||| | ||||||||| |||||||||||||
Sbjct 816 TGAATGAATGTGTAGATATCATAAATGATATAAATG 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32595094035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5